Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 88953955
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71
gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71
gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens] 263 2e-71
gi|14150124 LLP homolog [Homo sapiens] 248 1e-66
gi|147905592 coiled-coil domain containing 102B [Homo sapiens] 38 0.002
gi|148233522 coiled-coil domain containing 102B [Homo sapiens] 38 0.002
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 38 0.003
gi|13129094 ashwin [Homo sapiens] 36 0.007
gi|224593756 hypothetical protein LOC164127 [Homo sapiens] 34 0.028
gi|21450705 leucine rich repeat containing 45 [Homo sapiens] 34 0.028
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 34 0.037
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 34 0.037
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.048
gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo s... 33 0.062
gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo s... 33 0.062
gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo sa... 33 0.062
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 33 0.062
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 33 0.062
gi|9966799 UTP3, small subunit processome component [Homo sapiens] 33 0.081
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 32 0.11
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.11
gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens] 32 0.14
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 32 0.18
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 32 0.18
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 32 0.18
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 32 0.18
gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 32 0.18
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 32 0.18
>gi|169164505 PREDICTED: similar to LLP homolog [Homo sapiens]
Length = 129
Score = 263 bits (673), Expect = 2e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
Query: 121 VKVAKGLAW 129
VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129
>gi|88959164 PREDICTED: similar to LLP homolog [Homo sapiens]
Length = 129
Score = 263 bits (673), Expect = 2e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
Query: 121 VKVAKGLAW 129
VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129
>gi|88953955 PREDICTED: similar to LLP homolog [Homo sapiens]
Length = 129
Score = 263 bits (673), Expect = 2e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA
Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
Query: 121 VKVAKGLAW 129
VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129
>gi|14150124 LLP homolog [Homo sapiens]
Length = 129
Score = 248 bits (632), Expect = 1e-66
Identities = 123/129 (95%), Positives = 125/129 (96%)
Query: 1 MAKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE 60
MAKSL SKWKRKMRAEKRKKNAP+E SRLKSILKLD DVLMKDVQEIATVVVPKPKHCQE
Sbjct: 1 MAKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLDGDVLMKDVQEIATVVVPKPKHCQE 60
Query: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK K+KAKA
Sbjct: 61 KMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKGKSKAKA 120
Query: 121 VKVAKGLAW 129
VKVAKGLAW
Sbjct: 121 VKVAKGLAW 129
>gi|147905592 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 38.1 bits (87), Expect = 0.002
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 2 AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59
A SLW KWK E+ K++ P+ V +L +D ++QE++ + + K + +
Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341
Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
+++ CE++ E + ++ E + +K+ +L++ Q N+R + ++K E +KN+
Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401
Query: 120 A 120
A
Sbjct: 402 A 402
Score = 26.9 bits (58), Expect = 4.5
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 7 SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
S+W ++ E+ K+ E RLK + +K+++E+ +K +
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402
Query: 67 KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
+ D KM + D++ + LL+ QH Y + + R ++N+A+ K+
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461
>gi|148233522 coiled-coil domain containing 102B [Homo sapiens]
Length = 513
Score = 38.1 bits (87), Expect = 0.002
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 2 AKSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPK--HCQ 59
A SLW KWK E+ K++ P+ V +L +D ++QE++ + + K + +
Sbjct: 291 ALSLW-KWKY----EELKESKPKNVKEFDILLGQHND----EMQELSGNIKEESKSQNSK 341
Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
+++ CE++ E + ++ E + +K+ +L++ Q N+R + ++K E +KN+
Sbjct: 342 DRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLS 401
Query: 120 A 120
A
Sbjct: 402 A 402
Score = 26.9 bits (58), Expect = 4.5
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 7 SKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEV 66
S+W ++ E+ K+ E RLK + +K+++E+ +K +
Sbjct: 361 SEWDKREILEREKQGLERENRRLK--------IQVKEMEEL----------LDKKNRLSA 402
Query: 67 KDEKDDMKM-ETDIKRNKKTLLD-QHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
+ D KM + D++ + LL+ QH Y + + R ++N+A+ K+
Sbjct: 403 NSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKL 461
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 37.7 bits (86), Expect = 0.003
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSI-LKLDDDVLMKDVQEIATVVVP--KPKHCQEKMQC 64
K K K R +K K AP V K + L L V + ++P K +EK +
Sbjct: 637 KVKDKGREDKMKAPAPPLVLPPKELALPLFSPATASRVPAMLPSLLPVLPEKLFEEKEKV 696
Query: 65 EVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
+ K++K D K + K +K ++ + + KR + KREK KEK+K + +KV
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKE--------REKEKREREKREKEKEKHKHEKIKV 747
Score = 25.8 bits (55), Expect = 9.9
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMK--DVQEIATVVVPKPKHCQE 60
K L + K KM+ ++++++ E + K K D V K D + P + +E
Sbjct: 523 KKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKETGRETKYPWKEFLKE 582
Query: 61 K----MQCEVKDEKD---DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
+ + ++K+ +D +K++ + R +K ++H ++ + K+ K KREK K
Sbjct: 583 EEADPYKFKIKEFEDVDPKVKLKDGLVRKEK---EKHKDKK--KDREKGKKDKDKREKEK 637
Query: 114 EKNKAKAVKV 123
K+K + K+
Sbjct: 638 VKDKGREDKM 647
>gi|13129094 ashwin [Homo sapiens]
Length = 232
Score = 36.2 bits (82), Expect = 0.007
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQ------RKRLKAKREKRKEKNKAKAVK 122
E+ ++ +ETD++ NK +L D + Q+ I + QR K ++ KRE+ + KN+ K
Sbjct: 32 EQKNIAVETDVRVNKDSLTDLYVQHAIPLPQRDLPKNRWGKMMEKKREQHEIKNETKRSS 91
Query: 123 VAKGL 127
GL
Sbjct: 92 TVDGL 96
>gi|224593756 hypothetical protein LOC164127 [Homo sapiens]
Length = 623
Score = 34.3 bits (77), Expect = 0.028
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 13/116 (11%)
Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
+SL S+ + + + K ++ +V LKS KL++ V+ Q+I +V+ + K Q
Sbjct: 219 ESLASRDSQPLASSKEMRSPHTQV--LKS--KLEEVVVSSQDQQIVALVLTRLKKAQRIR 274
Query: 63 QCEVKDEK-------DDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREK 111
+ + + K D K++ ++R ++ LL Q + W + QRK L++ ++
Sbjct: 275 ELQQQAAKAWEELKRSDQKVQMTLERERRLLLRQSQEQ--WQEKEQRKTLQSPEQR 328
>gi|21450705 leucine rich repeat containing 45 [Homo sapiens]
Length = 670
Score = 34.3 bits (77), Expect = 0.028
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
KMRA + ++ E R + L+ + + +K+V+ + + K QE++Q + E
Sbjct: 405 KMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQ---RLEAA 461
Query: 72 DMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKA 120
+ +E ++ R K L + G Q + + +KAK + R E+ + A
Sbjct: 462 RLSLEEELSRVKAAALSERG-------QAEEELIKAKSQARLEEQQRLA 503
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 33.9 bits (76), Expect = 0.037
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
+R R+E K A EE + + KD + T K +E + + VK+
Sbjct: 1016 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1073
Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121
EK D+K K T ++ + P + K L K EKRK K + K V
Sbjct: 1074 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1122
Score = 27.3 bits (59), Expect = 3.4
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118
E + K +K + K K++KK + + +Q+ + K+ K+K+ K KEK K
Sbjct: 1688 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1747
Query: 119 K 119
K
Sbjct: 1748 K 1748
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 33.9 bits (76), Expect = 0.037
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCE-VKD 68
+R R+E K A EE + + KD + T K +E + + VK+
Sbjct: 1050 ERSPRSEPPIKKAKEETPKTDNTKSSSSS--QKDEKITGTPRKAHSKSAKEHQETKPVKE 1107
Query: 69 EKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAV 121
EK D+K K T ++ + P + K L K EKRK K + K V
Sbjct: 1108 EKVKKDYSKDVKSEKLTTKEEKAKKP----NEKNKPLDNKGEKRKRKTEEKGV 1156
Score = 27.3 bits (59), Expect = 3.4
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 60 EKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQR-KRLKAKREKRKEKNKA 118
E + K +K + K K++KK + + +Q+ + K+ K+K+ K KEK K
Sbjct: 1722 ESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDKEKEKE 1781
Query: 119 K 119
K
Sbjct: 1782 K 1782
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 33.5 bits (75), Expect = 0.048
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
++K R EK K E+ R K K + T K + +E+ + E + E
Sbjct: 97 RKKRRREKENKEGEEKEKRKKKEKK----------ERGRTSKEGKERERKEERKREERKE 146
Query: 70 ----KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122
K++ + E + K KK Q G+ +++RK K + RKE+ K + K
Sbjct: 147 RERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERK 203
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 40 LMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQ 99
L ++Q ++ + KP Q Q E+++ + +++ + K+ +++ +
Sbjct: 13 LNTELQMVSCSHISKPC-TQPGWQSEIREREREIETRKEGKKERESE----------RKK 61
Query: 100 RQRKRLKAKREKRKEKNKAKAVKVAKG 126
+R+R K KRE+ KE+ + + K KG
Sbjct: 62 ERREREKRKREREKERKRERGKKEKKG 88
Score = 26.6 bits (57), Expect = 5.8
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
K + R E+RK+ +E R K + + + + +E V +++ + + K+
Sbjct: 131 KERERKEERKREERKERERKKEEREKERERKERKKRERKQVG-------EKEEERKEKER 183
Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117
K+ K E + K KK + +R+RK+ + K+E+RK++ +
Sbjct: 184 KERKKRERNRKERKKERERKE--------RRERKKERKKKEERKKERQ 223
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 33.5 bits (75), Expect = 0.048
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
K +RK + EK+K+ + R + K + ++ Q + K ++K + E K
Sbjct: 92 KERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRER---KRKKRRKKKRRKERK 148
Query: 68 DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
EK+ K E K+ KK ++ + N+++RK+ + ++E+R+ K + K
Sbjct: 149 REKERGKRERKRKKRKKEEREKKRE----RNRKERKKERERKERRERKKERK 196
Score = 30.4 bits (67), Expect = 0.40
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
KRK R EK++K E+ R + K + + +E K + + K + E K +
Sbjct: 78 KRKER-EKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRK 136
Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVK 122
K K ++ +K + G+ ++++KR K +REK++E+N+ + K
Sbjct: 137 KRRKKKRRKERKREK----ERGK----RERKRKKRKKEEREKKRERNRKERKK 181
Score = 27.7 bits (60), Expect = 2.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 67 KDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
++ + + K E K KK + G+ +R+RK + +R++R+EK + K K K
Sbjct: 48 REREKERKRERGKKEKKKRKKRERGKE----RERKRKEREKQRKERREKERRKRKKEKK 102
Score = 25.8 bits (55), Expect = 9.9
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
K + EKRK+ +E R + + + +E + K +E+ + E +
Sbjct: 38 KERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRKEREKQRKERREKERRKR 97
Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
K + K KR +K + + +R+R+ + + KRK++ K K K K
Sbjct: 98 KKEKK-----KRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERK 148
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 33.5 bits (75), Expect = 0.048
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 25 EVSRLKSILKLDDDVLMKDV---QEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKR 81
E+ LK L L + K++ Q++ V + + QE + KD+ +++K
Sbjct: 1299 EIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKN 1358
Query: 82 NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKV 123
N KTLL Q+ Q + + + K K + + N A +K+
Sbjct: 1359 NMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATPIKI 1400
>gi|218083720 coiled-coil domain containing 121 isoform 2 [Homo
sapiens]
Length = 440
Score = 33.1 bits (74), Expect = 0.062
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
+ +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K
Sbjct: 217 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 276
Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
K QEK +++E ++ ET K R + L Q + +RL KR++R+
Sbjct: 277 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 334
Query: 114 EKNKAKAVKVA 124
KA+A+K+A
Sbjct: 335 LNMKAQALKLA 345
>gi|218083716 coiled-coil domain containing 121 isoform 1 [Homo
sapiens]
Length = 442
Score = 33.1 bits (74), Expect = 0.062
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
+ +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K
Sbjct: 219 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 278
Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
K QEK +++E ++ ET K R + L Q + +RL KR++R+
Sbjct: 279 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 336
Query: 114 EKNKAKAVKVA 124
KA+A+K+A
Sbjct: 337 LNMKAQALKLA 347
>gi|39979626 coiled-coil domain containing 121 isoform 3 [Homo
sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 0.062
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 3 KSLWSKWKRKM-RAEKRKKNAP----EEVSRLKSILKLDDDV---LMKDVQEIATVVVPK 54
+ +W+ + +K E+R++ + E++S LK+ L +++ L + +Q + + + K
Sbjct: 55 EKVWNSYLQKSGEIERRRQESASRYAEQISVLKTALLQKENIQSSLKRKLQAMRDIAILK 114
Query: 55 PKHCQEKMQCEVKDEKDDMKMETDIK-RNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRK 113
K QEK +++E ++ ET K R + L Q + +RL KR++R+
Sbjct: 115 EK--QEKEIQTLQEETKKVQAETASKTREVQAQLLQEKRLLEKQLSEPDRRLLGKRKRRE 172
Query: 114 EKNKAKAVKVA 124
KA+A+K+A
Sbjct: 173 LNMKAQALKLA 183
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 33.1 bits (74), Expect = 0.062
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 17 KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76
K P ++ ++ I + D L+K + +V +++ E + E
Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434
Query: 77 TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
D++++++ + +++ L AKREKRKEK K K
Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463
Score = 27.3 bits (59), Expect = 3.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
K + E+ KKN E+V + K IL K++Q++ + K + K E K +KD
Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865
Query: 72 DMKM 75
+ +
Sbjct: 866 TVSL 869
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 33.1 bits (74), Expect = 0.062
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 17 KRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKME 76
K P ++ ++ I + D L+K + +V +++ E + E
Sbjct: 1379 KEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVK----AKDQQAAEANKNASILLKE 1434
Query: 77 TDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
D++++++ + +++ L AKREKRKEK K K
Sbjct: 1435 LDLEKSRE--------------ESRKQALAAKREKRKEKRKKK 1463
Score = 27.3 bits (59), Expect = 3.4
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 12 KMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKD 71
K + E+ KKN E+V + K IL K++Q++ + K + K E K +KD
Sbjct: 814 KDKIEELKKNREEQVQKKKKIL--------KELQKVERQLQMKTQQQFTKEYLETKGQKD 865
Query: 72 DMKM 75
+ +
Sbjct: 866 TVSL 869
>gi|9966799 UTP3, small subunit processome component [Homo sapiens]
Length = 479
Score = 32.7 bits (73), Expect = 0.081
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 27 SRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQE--KMQCEVKDEKDDMKMETDIKRNKK 84
S ++ +L L DD + K++ A PKPK + C V D DD
Sbjct: 320 SEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACAVTDLSDDSD---------- 369
Query: 85 TLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
D+ + + R++LK K+E+ + +A + AK
Sbjct: 370 --FDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAK 408
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 32.3 bits (72), Expect = 0.11
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 10 KRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDE 69
+ K+ K+ E SR + D M+D++ + K +E+ + +
Sbjct: 236 RAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAER 295
Query: 70 KDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
++ +K T ++ K L D+ + N QRKRL +R+K EK + K ++A+
Sbjct: 296 QEQIKQRTKLELKAKDLQDE-----LAGNSEQRKRLLKERQKLLEKIEEKQKELAE 346
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 32.3 bits (72), Expect = 0.11
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 8 KWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVK 67
K K+K + EK +K ++ K+ +K + L K +E E+ Q +
Sbjct: 316 KDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEE-------------EERQKREE 362
Query: 68 DEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
+E+ E + KR ++ L+Q +R+RK+ K K K + K + K
Sbjct: 363 EERIKRLEELEAKRKEEERLEQ--------EKRERKKQKEKERKERLKKEGK 406
>gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens]
Length = 641
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 24 EEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDMKMETDIKRNK 83
EE RL++ ++ D + +++ +E K + +E+++ E++ EK+ + E IK NK
Sbjct: 102 EEEERLRNKIRADHEKALEEAKE-------KLRKSREEIRAEIQTEKNKVVQEMKIKENK 154
Query: 84 -------KTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNK 117
L+ G P + ++ KREK KE K
Sbjct: 155 PLPPVPIPNLVGIRGGDP------EDNDIREKREKIKEMMK 189
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 31.6 bits (70), Expect = 0.18
Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
+ +W + K+ +++ + EE+ R + ++ + + +M+D +E V K + +EKM
Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464
Query: 63 Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
Q E K ++ + K++ ++ ++ LL Q + IW + + R + K +++EK + +
Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522
Query: 120 AVKVAK 125
K+ +
Sbjct: 523 EEKMQR 528
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 31.6 bits (70), Expect = 0.18
Identities = 27/126 (21%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 3 KSLWSKWKRKMRAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKM 62
+ +W + K+ +++ + EE+ R + ++ + + +M+D +E V K + +EKM
Sbjct: 406 EKMWRQEKKMREQDEKIREQEEEMWRQEEKIR-ELEEMMQDQEEKLREVEEKMQEEEEKM 464
Query: 63 Q-CEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKEKNKAK 119
Q E K ++ + K++ ++ ++ LL Q + IW + + R + K +++EK + +
Sbjct: 465 QEQEEKIQRQEEKIQEQEEKTWRQEKLLKQ--EEKIWEQEEKMWRQEEKMWEQEEKMQEQ 522
Query: 120 AVKVAK 125
K+ +
Sbjct: 523 EEKMQR 528
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 31.6 bits (70), Expect = 0.18
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 14 RAEKRKKNAPEEVSRLKSILKLDDDVLMKDVQEIATVVVPKPKHCQEKMQCEVKDEKDDM 73
+AEK+K++ EE+ LK+ L+ D QE+ T + ++ ++ E K+ + +
Sbjct: 1136 KAEKQKRDLSEELEALKTELEDTLDTTAAQ-QELRTKREQEVAELKKALEEETKNHEAQI 1194
Query: 74 KMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKE 114
+ D+++ T L++ + Q KR KA EK K+
Sbjct: 1195 Q---DMRQRHATALEELSE-----QLEQAKRFKANLEKNKQ 1227
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 31.6 bits (70), Expect = 0.18
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 34 KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87
K D +L + +E + P ++++Q + K+ K K+E K KK +
Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555
Query: 88 DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
+++ + +++Q K K++++ ++EK K+K K K
Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590
>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 31.6 bits (70), Expect = 0.18
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 34 KLDDDVLMKDVQEIATVVVPKPKHCQEKMQC------EVKDEKDDMKMETDIKRNKKTLL 87
K D +L + +E + P ++++Q + K+ K K+E K KK +
Sbjct: 496 KAQDKILSNEYEEKYDLSRPTASQLEDELQVGNVPLKKAKESKKHEKLEKPEKEKKKKMK 555
Query: 88 DQHGQYPIWMNQRQRKRLKAKREKRKEKNKAKAVKVAK 125
+++ + +++Q K K++++ ++EK K+K K K
Sbjct: 556 NENAD-KLLKSEKQMK--KSEKKSKQEKEKSKKKKGGK 590
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 31.6 bits (70), Expect = 0.18
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 13/68 (19%)
Query: 53 PKPKHCQEKMQCEVKDEKDDMKMETDIKRNKKTLLDQHGQYPIWMNQRQRKRLKAK-REK 111
P K+ +EK +VKD K + K E DI+RN ++ +Y + +KR K+K R K
Sbjct: 416 PNRKNEKEK---KVKDHKSNSK-ERDIRRNS----EKDDKY----KNKVKKRAKSKSRSK 463
Query: 112 RKEKNKAK 119
KEK+K+K
Sbjct: 464 SKEKSKSK 471
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.126 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,373
Number of Sequences: 37866
Number of extensions: 193735
Number of successful extensions: 1578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 417
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.