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Search of human proteins with 85794840
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp... 380 e-106
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp... 287 5e-78
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl... 193 9e-50
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp... 193 9e-50
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp... 170 6e-43
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl... 170 6e-43
gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens] 131 4e-31
gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens] 131 4e-31
gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo sap... 131 4e-31
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 35 0.054
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom... 34 0.093
gi|119395716 forkhead box C1 [Homo sapiens] 33 0.21
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 32 0.35
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 31 0.60
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 31 0.60
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 31 0.60
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 31 0.60
gi|56786136 sperm-specific sodium proton exchanger [Homo sapiens] 31 0.60
gi|83367077 mucin 16 [Homo sapiens] 30 1.0
gi|148886716 downstream of Stk11 [Homo sapiens] 30 1.0
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 30 1.8
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 29 2.3
gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 29 2.3
gi|46250735 keratin associated protein 10-2 [Homo sapiens] 29 2.3
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ... 29 2.3
gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo s... 29 3.0
gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo s... 29 3.0
gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo s... 29 3.0
gi|119703744 desmoglein 1 preproprotein [Homo sapiens] 28 3.9
gi|91982772 mucin 17 [Homo sapiens] 28 3.9
>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
Length = 198
Score = 380 bits (977), Expect = e-106
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MPELILYVAITLSVAERLVGPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFA 60
MPELILYVAITLSVAERLVGPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFA
Sbjct: 1 MPELILYVAITLSVAERLVGPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFA 60
Query: 61 CSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSA 120
CSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSA
Sbjct: 61 CSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSA 120
Query: 121 ISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180
ISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS
Sbjct: 121 ISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180
Query: 181 EAMGLFCLMVAFLILFAM 198
EAMGLFCLMVAFLILFAM
Sbjct: 181 EAMGLFCLMVAFLILFAM 198
>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform a precursor [Homo sapiens]
Length = 157
Score = 287 bits (734), Expect = 5e-78
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 48 SPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPL 107
SPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPL
Sbjct: 7 SPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPL 66
Query: 108 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 167
TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ
Sbjct: 67 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 126
Query: 168 QLFSYAILGFALSEAMGLFCLMVAFLILFAM 198
QLFSYAILGFALSEAMGLFCLMVAFLILFAM
Sbjct: 127 QLFSYAILGFALSEAMGLFCLMVAFLILFAM 157
>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C3 precursor [Homo sapiens]
Length = 142
Score = 193 bits (490), Expect = 9e-50
Identities = 106/142 (74%), Positives = 116/142 (81%), Gaps = 1/142 (0%)
Query: 58 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF 116
MFAC+K TPSL+++ S++ RP+SA VL RPE T E + + S + R F
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 117 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 176
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 177 FALSEAMGLFCLMVAFLILFAM 198
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
Length = 142
Score = 193 bits (490), Expect = 9e-50
Identities = 106/142 (74%), Positives = 116/142 (81%), Gaps = 1/142 (0%)
Query: 58 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF 116
MFAC+K TPSL+++ S++ RP+SA VL RPE T E + + S + R F
Sbjct: 1 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 60
Query: 117 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 176
QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 61 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 120
Query: 177 FALSEAMGLFCLMVAFLILFAM 198
FALSEAMGLFCLMVAFLILFAM
Sbjct: 121 FALSEAMGLFCLMVAFLILFAM 142
>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
Length = 136
Score = 170 bits (431), Expect = 6e-43
Identities = 95/132 (71%), Positives = 106/132 (80%), Gaps = 5/132 (3%)
Query: 67 TPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDID 126
+P+L++ ++ L RP+SA L P + S + PL V+ R FQTS +SRDID
Sbjct: 10 SPALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREFQTSVVSRDID 64
Query: 127 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 186
TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF
Sbjct: 65 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 124
Query: 187 CLMVAFLILFAM 198
CLMVAFLILFAM
Sbjct: 125 CLMVAFLILFAM 136
>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C1 precursor [Homo sapiens]
Length = 136
Score = 170 bits (431), Expect = 6e-43
Identities = 95/132 (71%), Positives = 106/132 (80%), Gaps = 5/132 (3%)
Query: 67 TPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDID 126
+P+L++ ++ L RP+SA L P + S + PL V+ R FQTS +SRDID
Sbjct: 10 SPALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREFQTSVVSRDID 64
Query: 127 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 186
TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF
Sbjct: 65 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 124
Query: 187 CLMVAFLILFAM 198
CLMVAFLILFAM
Sbjct: 125 CLMVAFLILFAM 136
>gi|169206305 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 131 bits (329), Expect = 4e-31
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 5/110 (4%)
Query: 78 LSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAA 137
L R +SA L P+ + S S PL V+ R FQTS +SRDID AAK IGAGAA
Sbjct: 21 LIRTVSASFLNSPDNSPKQPSYS---SSPLR--VARREFQTSIVSRDIDIAAKLIGAGAA 75
Query: 138 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 187
TVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEAMGLFC
Sbjct: 76 TVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEAMGLFC 125
>gi|239750572 PREDICTED: similar to hCG1639781 [Homo sapiens]
Length = 125
Score = 131 bits (329), Expect = 4e-31
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 5/110 (4%)
Query: 78 LSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAA 137
L R +SA L P+ + S S PL V+ R FQTS +SRDID AAK IGAGAA
Sbjct: 21 LIRTVSASFLNSPDNSPKQPSYS---SSPLR--VARREFQTSIVSRDIDIAAKLIGAGAA 75
Query: 138 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 187
TVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEAMGLFC
Sbjct: 76 TVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEAMGLFC 125
>gi|239744873 PREDICTED: hypothetical protein LOC390424 [Homo
sapiens]
Length = 125
Score = 131 bits (329), Expect = 4e-31
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 5/110 (4%)
Query: 78 LSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAA 137
L R +SA L P+ + S S PL V+ R FQTS +SRDID AAK IGAGAA
Sbjct: 21 LIRTVSASFLNSPDNSPKQPSYS---SSPLR--VARREFQTSIVSRDIDIAAKLIGAGAA 75
Query: 138 TVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 187
TVGVAGSGAGIG VFGSLIIGYARN SLKQQLFSYA LGFALSEAMGLFC
Sbjct: 76 TVGVAGSGAGIGKVFGSLIIGYARNLSLKQQLFSYATLGFALSEAMGLFC 125
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 34.7 bits (78), Expect = 0.054
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 34 RCSAPLCLLCSGSSSPATAPHP-------LKMFACSKFVSTPSLVK-STSQLLSRPLSAV 85
+C PL CS SSSPA P + S STP V ST++ P +A
Sbjct: 1474 QCCTPLA--CSTSSSPAQTTPPTTSKTTETRASGSSAPSSTPGTVSLSTARTTPAPGTAT 1531
Query: 86 VLKR------PEILTDESLSSLAVSCPLTSLVSSRSF----QTSAISRDIDTAAKFIGAG 135
+K+ P + S SS++ + P TS+VSS+ TS+ +++ T ++I
Sbjct: 1532 SVKKTFSTPSPPPVPATSTSSMSTTTPGTSVVSSKPTLTEPSTSSCLQELCTWTEWIDGS 1591
Query: 136 AATVGVAG 143
G+ G
Sbjct: 1592 YPAPGING 1599
Score = 28.9 bits (63), Expect = 3.0
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 20 GPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLS 79
GP C R C P C +S+P TAP A S ST S KS + L
Sbjct: 1826 GPFKMCLNYEVRVLCCETPRG--CPVTSTPVTAPSTPSGRAISPTQSTSSWQKSRTTTL- 1882
Query: 80 RPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAIS 122
++ P+ T + ++ S P S+ + +T++ S
Sbjct: 1883 --VTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTRTTSAS 1923
>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
sapiens]
Length = 155
Score = 33.9 bits (76), Expect = 0.093
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 119 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 175
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
Query: 176 GFALSEAMGLFCLMVAFLI 194
+E +GL+ L+VA ++
Sbjct: 134 ILIFAEVLGLYGLIVALIL 152
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 32.7 bits (73), Expect = 0.21
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 19/149 (12%)
Query: 19 VGPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAP--HPLKMFACSKFVSTP-------- 68
+G G A A P S S+ L SGSS P + P PL + P
Sbjct: 246 LGSGSAAAVPKIESPDSSSSS--LSSGSSPPGSLPSARPLSLDGADSAPPPPAPSAPPPH 303
Query: 69 -----SLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISR 123
S+ + L P SA +L + SS A P +L + Q+S S
Sbjct: 304 HSQGFSVDNIMTSLRGSPQSAAAELSSGLLASAAASSRAGIAPPLALGAYSPGQSSLYSS 363
Query: 124 DID--TAAKFIGAGAATVGVAGSGAGIGT 150
++A G G G AG G GT
Sbjct: 364 PCSQTSSAGSSGGGGGGAGAAGGAGGAGT 392
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 32.0 bits (71), Expect = 0.35
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 23 HACAEPSFRSSRCSAPLCL----LCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLL 78
H C P + AP+C+ SS P AP P +F ST SLV S L
Sbjct: 1096 HQCQSPQHEPLQLPAPVCIGYRDAPRASSPPRQAPEPSLLFQDLPRASTESLVPSMDSLH 1155
Query: 79 SRP 81
P
Sbjct: 1156 ECP 1158
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 22 GHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRP 81
G A RS + S PL +G S + +P PL A S + PS + T +SR
Sbjct: 506 GLAAPPRRLRSRKVSCPLTR-SNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRG 564
Query: 82 LSAVVLKRPEIL 93
S VVL + L
Sbjct: 565 PSPVVLGSQDAL 576
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 22 GHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRP 81
G A RS + S PL +G S + +P PL A S + PS + T +SR
Sbjct: 556 GLAAPPRRLRSRKVSCPLTR-SNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRG 614
Query: 82 LSAVVLKRPEIL 93
S VVL + L
Sbjct: 615 PSPVVLGSQDAL 626
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 22 GHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRP 81
G A RS + S PL +G S + +P PL A S + PS + T +SR
Sbjct: 556 GLAAPPRRLRSRKVSCPLTR-SNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRG 614
Query: 82 LSAVVLKRPEIL 93
S VVL + L
Sbjct: 615 PSPVVLGSQDAL 626
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 31.2 bits (69), Expect = 0.60
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 22 GHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRP 81
G A RS + S PL +G S + +P PL A S + PS + T +SR
Sbjct: 556 GLAAPPRRLRSRKVSCPLTR-SNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRG 614
Query: 82 LSAVVLKRPEIL 93
S VVL + L
Sbjct: 615 PSPVVLGSQDAL 626
>gi|56786136 sperm-specific sodium proton exchanger [Homo sapiens]
Length = 1177
Score = 31.2 bits (69), Expect = 0.60
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 73 STSQLLSRP-----LSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAIS 122
S +QLL +P SA+++ +LT ++ L +S L SL++ S TS IS
Sbjct: 128 SVNQLLLKPTQWLLFSAILVSSDPMLTAAAIRDLGLSRSLISLINGESLMTSVIS 182
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.4 bits (67), Expect = 1.0
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 46 SSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSC 105
SSS T+P PL STPS +S + L ++ + + D SL S
Sbjct: 9438 SSSSVTSPSPL--------YSTPSGSSHSSPVPVTSLFTSIMMKATDMLDASLEPETTSA 9489
Query: 106 PLTSLVSSRSF-------QTSAISRDIDTAAKFIGAGAATVGVAGSGAG 147
P ++ S S +T AI +TAA + +AT + S G
Sbjct: 9490 PNMNITSDESLAASKATTETEAIHVFENTAASHVETTSATEELYSSSPG 9538
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 30.4 bits (67), Expect = 1.0
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 44 SGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAV 103
SG +S AT PHP ++P + Q + L+ + L + +S A
Sbjct: 180 SGEASSATTPHP---------ATSPKATLAIFQPPGKALTGRSVGPSSALPGDPYNSAAG 230
Query: 104 SCPLTSLVSSRSFQTSAISRDIDTAAKFIGAG----AATVGVAGSGAGIGTV 151
+ + S S S +D + AG AA G AG G+G GTV
Sbjct: 231 ATDFAEISPSAS-SDSGEGTSLDAGTRSTKAGGPGAAAGPGEAGPGSGAGTV 281
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 106 PLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG 147
PL S FQ +S + AA A AA AG+GAG
Sbjct: 71 PLGPTPSQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAG 112
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 29.3 bits (64), Expect = 2.3
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 2 PELILYVAITLSVAERLVGPGHACAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFAC 61
PE A+ + E P A P+ S+ +A + L +S A+ P P M A
Sbjct: 1153 PEESASAAVAVPTPEESASPAAAVPTPA-ESASFAAVVATLEEPTSPAASVPTPAAMVAT 1211
Query: 62 SKFVSTPSLVKSTSQLLSRPLSAV--------------VLKRPE-----ILTDESLSSLA 102
+ ++P+ TS+ + +AV L+ P +LT E LSS A
Sbjct: 1212 LEEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPA 1271
Query: 103 VSCPLTSLVSSRSFQTSAISRDIDTAA 129
S P +S + S + AA
Sbjct: 1272 ASVPTPEEPASPAAAVSNLEEPASPAA 1298
>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 2 [Homo sapiens]
Length = 158
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 123 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 82 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
Query: 181 EAMGLFCLMVAFL 193
A+GLF ++VA L
Sbjct: 137 SAIGLFGVIVAIL 149
>gi|46250735 keratin associated protein 10-2 [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 2.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 25 CAEPSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPL 82
C +P S C P+C SG+SSP + C+ PS S+ LL RP+
Sbjct: 187 CCKPVCCKSICCVPVC---SGASSPCCQQSSCQPACCTSSCCRPS---SSVSLLCRPV 238
>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 1 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 123 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180
R+ GAG TVG++ G +G V + A+NPSL ++ I G
Sbjct: 129 RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 183
Query: 181 EAMGLFCLMVAFL 193
A+GLF ++VA L
Sbjct: 184 SAIGLFGVIVAIL 196
>gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo
sapiens]
Length = 1314
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 91 EILTDESLSSLAVSCPLTSLVS-SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIG 149
EI+ +ES + S P + +S SR+ + SA S + GAG G GSGA G
Sbjct: 13 EIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSG 72
Query: 150 TVFGSL 155
G L
Sbjct: 73 GGAGGL 78
>gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo
sapiens]
Length = 1353
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 91 EILTDESLSSLAVSCPLTSLVS-SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIG 149
EI+ +ES + S P + +S SR+ + SA S + GAG G GSGA G
Sbjct: 13 EIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSG 72
Query: 150 TVFGSL 155
G L
Sbjct: 73 GGAGGL 78
>gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo
sapiens]
Length = 1274
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 91 EILTDESLSSLAVSCPLTSLVS-SRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIG 149
EI+ +ES + S P + +S SR+ + SA S + GAG G GSGA G
Sbjct: 13 EIVEEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSG 72
Query: 150 TVFGSL 155
G L
Sbjct: 73 GGAGGL 78
>gi|119703744 desmoglein 1 preproprotein [Homo sapiens]
Length = 1049
Score = 28.5 bits (62), Expect = 3.9
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 9 AITLSVAERLVGPG-----HACAE-PSFRS-SRCSAPLCLLCSGSSSPA--TAPHPLKMF 59
A + V ER+VGP H E P R S ++ SS P T HP +
Sbjct: 859 ASNVVVTERVVGPISGADLHGMLEMPDLRDGSNVIVTERVIAPSSSLPTSLTIHHPRES- 917
Query: 60 ACSKFVSTPSLVKSTSQLL-SRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQT 118
S V T +++ TS ++ S + + ++ E + S A +T + +
Sbjct: 918 --SNVVVTERVIQPTSGMIGSLSMHPELANAHNVIVTERVVSGA---GVTGISGTTGISG 972
Query: 119 SAISRDIDTAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPS 164
S + + G+GA + G++G G G+ ++ G+ IG+ R+ S
Sbjct: 973 GIGSSGLVGTSMGAGSGALSGAGISGGGIGLSSLGGTASIGHMRSSS 1019
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 28.5 bits (62), Expect = 3.9
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 36 SAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTD 95
S P+ + SSSP TA P + STP L PLS +++ E T
Sbjct: 244 STPVTISAQASSSPTTAEGPSLSNSAPSGGSTP--------LTRMPLSVMLVVSSEAST- 294
Query: 96 ESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAAT 138
S + A + P+ + + S T+A I T+ G+ T
Sbjct: 295 LSTTPAATNIPVITSTEASSSPTTAEGTSIPTSTYTEGSTPLT 337
Score = 28.1 bits (61), Expect = 5.1
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 36 SAPLCLLCSGSSSPATAPHPLKMFACSKFVSTP--SLVKSTSQLLSRPLSAVVLKRPEIL 93
S P+ GSSSP TA + VSTP S++ ST + S + +
Sbjct: 2897 SIPVTTSTEGSSSPTTAEGTSMPISTPSEVSTPLTSILVSTVPVAGSEASTLSTTPVDTR 2956
Query: 94 TDESLSSLAVSCPLTSLVSSRSFQT 118
T + S+ A S P T+ +S T
Sbjct: 2957 TPVTTSAEASSSPTTAEGTSMPIST 2981
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,001,326
Number of Sequences: 37866
Number of extensions: 308668
Number of successful extensions: 1387
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1338
Number of HSP's gapped (non-prelim): 66
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.