Guide to the Human Genome
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Name: ATP6V0B Sequence: fasta or formatted (158aa) NCBI GI: 86792634
Description:

ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b isoform 2

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [205aa] ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         18           2
 C cysteine            1.9          3           1
 D aspartate           1.9          3           1
 E glutamate           1.9          3           1
 F phenylalanine       4.4          7           1
 G glycine            13.9         22           3
 H histidine           1.3          2           1
 I isoleucine         13.9         22           2
 K lysine              3.8          6           1
 L leucine             7.6         12           1
 M methionine          3.2          5           1
 N asparagine          3.8          6           1
 P proline             2.5          4           1
 Q glutamine           1.3          2           1
 R arginine            1.9          3           1
 S serine              8.9         14           2
 T threonine           3.2          5           1
 V valine              9.5         15           2
 W tryptophan          1.3          2           1
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 
ATP6V0B               1.000   ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ...
ATP6V0C               0.235   ATPase, H+ transporting, lysosomal, V0 subunit c [Hom...
SLC9A5                0.039   solute carrier family 9 (sodium/hydrogen exchanger), ...
SLC26A3               0.021   solute carrier family 26, member 3 
ATP5G1                0.014   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G1                0.014   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5G2                0.014   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G3                0.014   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5G3                0.014   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G2                0.014   ATP synthase, H+ transporting, mitochondrial F0 comp...
SMC5                  0.014   SMC5 protein 
SLC5A2                0.007   solute carrier family 5 (sodium/glucose cotransporter...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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