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Search of human proteins with 8567418
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8567418 ubiquilin 3 [Homo sapiens]
(655 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8567418 ubiquilin 3 [Homo sapiens] 1328 0.0
gi|16753207 ubiquilin 2 [Homo sapiens] 394 e-109
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 342 5e-94
gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens] 339 5e-93
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 306 3e-83
gi|145580580 ubiquilin-like [Homo sapiens] 149 1e-35
gi|150170670 piccolo isoform 2 [Homo sapiens] 47 7e-05
gi|150378539 piccolo isoform 1 [Homo sapiens] 47 7e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 2e-04
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 45 2e-04
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 45 3e-04
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 45 3e-04
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 45 3e-04
gi|41152107 ubiquitin-like 7 [Homo sapiens] 43 0.001
gi|14249682 ubiquitin-like 7 [Homo sapiens] 43 0.001
gi|60460889 Myb protein P42POP [Homo sapiens] 42 0.002
gi|47132519 Ras association and pleckstrin homology domains 1 is... 42 0.002
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 41 0.004
gi|11024714 ubiquitin B precursor [Homo sapiens] 40 0.005
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 40 0.005
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 40 0.005
gi|67191208 ubiquitin C [Homo sapiens] 40 0.005
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 40 0.005
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 40 0.005
gi|110431370 espin [Homo sapiens] 39 0.012
gi|5453760 neural precursor cell expressed, developmentally down... 39 0.015
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 39 0.015
gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [H... 39 0.020
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 39 0.020
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 39 0.020
>gi|8567418 ubiquilin 3 [Homo sapiens]
Length = 655
Score = 1328 bits (3437), Expect = 0.0
Identities = 655/655 (100%), Positives = 655/655 (100%)
Query: 1 MAKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQ 60
MAKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQ
Sbjct: 1 MAKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQ 60
Query: 61 LVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQP 120
LVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQP
Sbjct: 61 LVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQP 120
Query: 121 SSIYPADGPPAFSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGL 180
SSIYPADGPPAFSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGL
Sbjct: 121 SSIYPADGPPAFSLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGL 180
Query: 181 LSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRV 240
LSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRV
Sbjct: 181 LSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRV 240
Query: 241 LSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMENCD 300
LSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMENCD
Sbjct: 241 LSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMENCD 300
Query: 301 PLPNPWTSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQLHENPQSLGTYL 360
PLPNPWTSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQLHENPQSLGTYL
Sbjct: 301 PLPNPWTSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQLHENPQSLGTYL 360
Query: 361 QGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENS 420
QGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENS
Sbjct: 361 QGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENS 420
Query: 421 TGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSP 480
TGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSP
Sbjct: 421 TGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSP 480
Query: 481 AYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQALRQIEQGLQVLATEAPR 540
AYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQALRQIEQGLQVLATEAPR
Sbjct: 481 AYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQALRQIEQGLQVLATEAPR 540
Query: 541 LLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPALDSAELGFLSPPFLHMLQ 600
LLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPALDSAELGFLSPPFLHMLQ
Sbjct: 541 LLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPALDSAELGFLSPPFLHMLQ 600
Query: 601 DLVSTNPQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 655
DLVSTNPQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS
Sbjct: 601 DLVSTNPQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 655
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 394 bits (1011), Expect = e-109
Identities = 264/670 (39%), Positives = 347/670 (51%), Gaps = 89/670 (13%)
Query: 5 GEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI 64
G A QGS A +P +IKVTVKTPK+KE+F+V + ++QQ KE IS+RFK+ DQLVLI
Sbjct: 16 GPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI 75
Query: 65 FAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIY 124
FAGKILKD D+L Q G+ DGLTVHLVIK Q+R G ++ + S P+ +S
Sbjct: 76 FAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTP 135
Query: 125 PADGPPAF---SLGLLTGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIPGLL 181
+ F SLG L GLS LGL+ F + S + +Q ++ PE + Q++++PF+ +L
Sbjct: 136 ISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQSML 195
Query: 182 SNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQDRVL 241
SN L+RQL++ NP MQQLIQ NPEI H+LNNP+IMRQTLE RNPAMMQEM+R+QD L
Sbjct: 196 SNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLAL 255
Query: 242 SNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMENCDP 301
SNLESIPGGYN L MYTDI +PMLNA QEQFGGNPFA+ + +++ +QPSR EN DP
Sbjct: 256 SNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRDP 315
Query: 302 LPNPW-------------TSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQ 348
LPNPW T+T GSGS + + N + + LQQ
Sbjct: 316 LPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQ 375
Query: 349 LHENPQSL-----GTYLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAI 403
+ ENPQ + Y++ +LSQ+ P ++ +SP + P +E +
Sbjct: 376 ITENPQLIQNMLSAPYMRSMMQSLSQN---PDLAAQMMLNSPLF----TANPQLQEQM-- 426
Query: 404 KGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFS 463
R PAFL+ T A ++ L + GL A P SF+
Sbjct: 427 --RPQLPAFLQQMQNPDTLSAMSNPRAMQA-------LMQIQQGLQTLATEAPGLIPSFT 477
Query: 464 PTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQA 523
P + + P P I P P++ P
Sbjct: 478 PGVGVGVLGTAIGPVGPVTP-----------------IGPIGPIVPFTPIGPIGP----- 515
Query: 524 LRQIEQGLQVLATEAPRLLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPAL 583
+ AP P G+G G S P + P
Sbjct: 516 -------IGPTGPAAP-------PGSTGSGGPTGPTVSSAAPSETTSP------------ 549
Query: 584 DSAELGFLSPPFLHMLQDLVSTN-PQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATG 642
++E G M+Q L N PQ PE FQ QLEQL +MGFLNREANLQALIATG
Sbjct: 550 -TSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATG 608
Query: 643 GDVDAAVEKL 652
GD++AA+E+L
Sbjct: 609 GDINAAIERL 618
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 342 bits (878), Expect = 5e-94
Identities = 203/469 (43%), Positives = 272/469 (57%), Gaps = 33/469 (7%)
Query: 2 AKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 61
A G E + A +P ++KVTVKTPK+KE+F+V + ++QQ KEEIS+RFK+H DQL
Sbjct: 17 AAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQL 76
Query: 62 VLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPS 121
VLIFAGKILKD D+L+Q G+ DGLTVHLVIK Q+R + + + S P +
Sbjct: 77 VLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSN 136
Query: 122 SIYPADGPPAFSLGLL---TGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIP 178
S + F LG L GLS LGL F + S + RQ +S PE + Q++++PF+
Sbjct: 137 STSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQ 196
Query: 179 GLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQD 238
+LSN L+RQL++ NP MQQLIQ NPEI H+LNNP+IMRQTLE RNPAMMQEM+R+QD
Sbjct: 197 SMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQD 256
Query: 239 RVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMEN 298
R LSNLESIPGGYN L MYTDI +PML+A QEQFGGNPFA+ ++ ++ SQPSR EN
Sbjct: 257 RALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTEN 316
Query: 299 CDPLPNPW--------------TSTHGGS--GSRQGRQDGDQDAPD-IRNRFPNFLGIIR 341
DPLPNPW ST GG+ + G AP+ + +
Sbjct: 317 RDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPG 376
Query: 342 LYDYLQQLHENPQSL-----GTYLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPL 396
+ LQQ+ ENPQ + Y++ +LSQ+ + + P + + P + Q L
Sbjct: 377 MQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMQN-PDTLSAMSNPRAMQAL 435
Query: 397 PE-----ESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTN 440
+ +++A + P F P + G G G S+ S N
Sbjct: 436 LQIQQGLQTLATEAPGLIPGFT--PGLGALGSTGGSSGTNGSNATPSEN 482
>gi|16753203 ubiquilin 1 isoform 1 [Homo sapiens]
Length = 589
Score = 339 bits (869), Expect = 5e-93
Identities = 189/396 (47%), Positives = 247/396 (62%), Gaps = 25/396 (6%)
Query: 2 AKGGEALPQGSPAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQL 61
A G E + A +P ++KVTVKTPK+KE+F+V + ++QQ KEEIS+RFK+H DQL
Sbjct: 17 AAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQL 76
Query: 62 VLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPS 121
VLIFAGKILKD D+L+Q G+ DGLTVHLVIK Q+R + + + S P +
Sbjct: 77 VLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTAGSNVTTSSTPNSN 136
Query: 122 SIYPADGPPAFSLGLL---TGLSRLGLAYRGFPDQPSSLMRQHVSVPEFVTQLIDDPFIP 178
S + F LG L GLS LGL F + S + RQ +S PE + Q++++PF+
Sbjct: 137 STSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQ 196
Query: 179 GLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEFLRNPAMMQEMIRSQD 238
+LSN L+RQL++ NP MQQLIQ NPEI H+LNNP+IMRQTLE RNPAMMQEM+R+QD
Sbjct: 197 SMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQD 256
Query: 239 RVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATTDNATTTTSQPSRMEN 298
R LSNLESIPGGYN L MYTDI +PML+A QEQFGGNPFA+ ++ ++ SQPSR EN
Sbjct: 257 RALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTEN 316
Query: 299 CDPLPNPW--------------TSTHGGS--GSRQGRQDGDQDAPD-IRNRFPNFLGIIR 341
DPLPNPW ST GG+ + G AP+ + +
Sbjct: 317 RDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQSTTAPNLVPGVGASMFNTPG 376
Query: 342 LYDYLQQLHENPQSL-----GTYLQGTASALSQSQE 372
+ LQQ+ ENPQ + Y++ +LSQ+ +
Sbjct: 377 MQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPD 412
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 306 bits (785), Expect = 3e-83
Identities = 209/571 (36%), Positives = 292/571 (51%), Gaps = 81/571 (14%)
Query: 22 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGV 81
I+VTVKTPKDKE+ + D ++++ KEEIS+RFKA DQLVLIFAGKILKD D+L Q G+
Sbjct: 13 IRVTVKTPKDKEEIVICDRASVKEFKEEISRRFKAQQDQLVLIFAGKILKDGDTLNQHGI 72
Query: 82 RDGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIYPA--------------- 126
+DGLTVHLVIK +A AS P+ P P S P + PA
Sbjct: 73 KDGLTVHLVIKTPQKAQDPAAATASSPST-PDPASAPSTTPASPATPAQPSTSGSASSDA 131
Query: 127 -----------------DGPPAFSLGLLTG------LSRLGLAYRGFPDQPSSLMRQHVS 163
+G P+ + +L+G L LGL F + + RQ +S
Sbjct: 132 GSGSRRSSGGGPSPGAGEGSPSATASILSGFGGILGLGSLGLGSANFMELQQQMQRQLMS 191
Query: 164 VPEFVTQLIDDPFIPGLLSNTGLVRQLVLDNPHMQQLIQHNPEIGHILNNPEIMRQTLEF 223
PE ++Q++++P + ++SN L+R +++ NP MQQL++ NPEI H+LNNPE+MRQT+E
Sbjct: 192 NPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMEL 251
Query: 224 LRNPAMMQEMIRSQDRVLSNLESIPGGYNVLCTMYTDIMDPMLNAVQEQFGGNPFATATT 283
RNPAMMQEM+R+QDR LSNLESIPGGYN L MYTDI +PM +A +EQFG NPF ++
Sbjct: 252 ARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPF-SSLA 310
Query: 284 DNATTTTSQPSRMENCDPLPNPW------TSTHGGSGSRQGRQDGDQDAPDIRNRF---- 333
N+ +++SQP R EN +PLPNPW + G G G Q P + N F
Sbjct: 311 GNSDSSSSQPLRTENREPLPNPWSPSPPTSQAPGSGGEGTGGSGTSQVHPTVSNPFGINA 370
Query: 334 ----PNFLGIIRLYDYLQQLHENPQSL-----GTYLQGTASALSQSQEPPPSVNRVPPSS 384
+ LQQ+ ENPQ + Y++ L+Q+ P ++ +
Sbjct: 371 ASLGSGMFNSPEMQALLQQISENPQLMQNVISAPYMRSMMQTLAQN---PDFAAQMMVNV 427
Query: 385 PSSQEPGSGQPLPEESVAIK-----GRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHST 439
P +G P +E + ++ + P L T Q Q G + T
Sbjct: 428 PLF----AGNPQLQEQLRLQLPVFLQQMQNPESLSILTNPRAMQALLQIQQGLQTL--QT 481
Query: 440 NLPDLVSGLGD-SANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPDGMNPAPQLQ 498
P LV LG +R P AP + S + P P SPA P + P G + A Q
Sbjct: 482 EAPGLVPSLGSFGISRTP-APSAGSNAGSTPEAP----TSSPATPATSSPTGASSAQ--Q 534
Query: 499 DEIQPQLPLLMHLQAAMANPRALQALRQIEQ 529
+Q + LL + ++ +Q+EQ
Sbjct: 535 QLMQQMIQLLAGSGNSQVQTPEVRFQQQLEQ 565
>gi|145580580 ubiquilin-like [Homo sapiens]
Length = 475
Score = 149 bits (375), Expect = 1e-35
Identities = 98/271 (36%), Positives = 146/271 (53%), Gaps = 23/271 (8%)
Query: 23 KVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR 82
+V VKT +++DF V D +++Q KE + F+ DQLVL+F G +LKD D+L+Q G+
Sbjct: 32 RVIVKTAGNQKDFMVADDISVRQFKEMLLAHFQCQMDQLVLVFMGCLLKDHDTLSQRGIM 91
Query: 83 DGLTVHLVIKRQHRAMGNECPAASVPTQGPSPGSLPQPSSIYPADGPPAFSLGLLTGLSR 142
DG T++LVIK + + +PT P + P TG+++
Sbjct: 92 DGHTIYLVIKSKQGSRSLAHSFRDLPTNDPCHRDRNTKGNSSRVHQP--------TGMNQ 143
Query: 143 --LGLAYRGFPDQPS-SLMRQHVSVPEFVTQLIDDPFIPGLLSNTGLVRQLVLDNPHMQQ 199
+ LA+ D P VS PE Q++++P I LLSN + Q + ++ QQ
Sbjct: 144 APVELAHFVGSDAPKVHTQNLEVSHPECKAQMLENPSIQRLLSNMEFMWQFISEHLDTQQ 203
Query: 200 LIQHNPEIGH-ILNNPEIMRQTLEFLRNPAMMQEMIRSQD-----------RVLSNLESI 247
L+Q NPE+ +L+N EI+ QTLE RN AM+QE+++ Q + LE++
Sbjct: 204 LMQQNPEVSRLLLDNSEILLQTLELARNLAMIQEIMQIQQPSQNLEYPLNPQPYLGLETM 263
Query: 248 PGGYNVLCTMYTDIMDPMLNAVQEQFGGNPF 278
PGG N L Y DI D MLN++Q+ FGGNPF
Sbjct: 264 PGGNNALGQNYADINDQMLNSMQDPFGGNPF 294
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 46.6 bits (109), Expect = 7e-05
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 38/197 (19%)
Query: 361 QGTASALSQSQEP-------PPSVNRVP-----PSSPSSQEPGSGQPLPEESVAIKGRSS 408
Q T S S++P PP V + P P+ P +Q+ G+ +PL ++ G S
Sbjct: 374 QQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP----GLQS 429
Query: 409 CPAFLRYPTENSTGQGG------DQDGAGKSSTGHS--TNLPDLVSGLGDS-------AN 453
PA PT+ Q G Q G GK+S + T P + G A
Sbjct: 430 -PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAK 488
Query: 454 RVPFAPLSFSPTAAIPGIPEPP-WLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQ 512
P P S P + PG +PP P PA P +P P Q +P Q
Sbjct: 489 PPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQ-----Q 543
Query: 513 AAMANPRALQALRQIEQ 529
+ A P A Q+ + + Q
Sbjct: 544 PSPAKPSAQQSTKPVSQ 560
Score = 34.7 bits (78), Expect = 0.29
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 27/144 (18%)
Query: 362 GTASALSQSQEPPPSVNRVP-PSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTE-- 418
G SA PPS ++P P+ P Q+PG +P P++ + K S P + P +
Sbjct: 457 GKTSAQQTGPTKPPS--QLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP 514
Query: 419 ----------NSTGQGGDQDGAGKSSTGHST----NLPDLVSGLGDSANRVPFAPLSFSP 464
ST Q G+ K S + + + + + P P + SP
Sbjct: 515 GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSP 574
Query: 465 TAAIPGIPEPPWLPSPAYPRSLRP 488
+A P PS P+++ P
Sbjct: 575 SAKQP--------PSQGLPKTICP 590
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 46.6 bits (109), Expect = 7e-05
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 38/197 (19%)
Query: 361 QGTASALSQSQEP-------PPSVNRVP-----PSSPSSQEPGSGQPLPEESVAIKGRSS 408
Q T S S++P PP V + P P+ P +Q+ G+ +PL ++ G S
Sbjct: 374 QQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP----GLQS 429
Query: 409 CPAFLRYPTENSTGQGG------DQDGAGKSSTGHS--TNLPDLVSGLGDS-------AN 453
PA PT+ Q G Q G GK+S + T P + G A
Sbjct: 430 -PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAK 488
Query: 454 RVPFAPLSFSPTAAIPGIPEPP-WLPSPAYPRSLRPDGMNPAPQLQDEIQPQLPLLMHLQ 512
P P S P + PG +PP P PA P +P P Q +P Q
Sbjct: 489 PPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQ-----Q 543
Query: 513 AAMANPRALQALRQIEQ 529
+ A P A Q+ + + Q
Sbjct: 544 PSPAKPSAQQSTKPVSQ 560
Score = 34.7 bits (78), Expect = 0.29
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 27/144 (18%)
Query: 362 GTASALSQSQEPPPSVNRVP-PSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTE-- 418
G SA PPS ++P P+ P Q+PG +P P++ + K S P + P +
Sbjct: 457 GKTSAQQTGPTKPPS--QLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP 514
Query: 419 ----------NSTGQGGDQDGAGKSSTGHST----NLPDLVSGLGDSANRVPFAPLSFSP 464
ST Q G+ K S + + + + + P P + SP
Sbjct: 515 GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSP 574
Query: 465 TAAIPGIPEPPWLPSPAYPRSLRP 488
+A P PS P+++ P
Sbjct: 575 SAKQP--------PSQGLPKTICP 590
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.4 bits (106), Expect = 2e-04
Identities = 70/262 (26%), Positives = 96/262 (36%), Gaps = 15/262 (5%)
Query: 360 LQGTASALSQSQEPPPSVNRVP--PSSPSSQEPGSGQPLPEESVAIKGRSSCPAF--LRY 415
L +A+ LS PS P P+ PS +P Q L V + + PA L
Sbjct: 242 LSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSS 301
Query: 416 PTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPP 475
+ G + +T LP + A +P AP S S ++ +P PP
Sbjct: 302 SPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPP 361
Query: 476 WLPSPAYPRSLRPDGMNPAPQLQDEIQPQLP--LLMHLQAAMANPRALQALRQIEQGLQV 533
P P S+ M P LQ Q+P L A +P AL +L Q L
Sbjct: 362 ATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSL-QATTSLGS 420
Query: 534 LATEAPRLLLWFMP--CLAGTGSVAGGIESRED--PLMSEDPLPNPPPEVFPALDSAELG 589
+A L P A S + + D PL + LP PP + +L A
Sbjct: 421 PTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPP-LQTSLSPAVSP 479
Query: 590 FLSPPFLHMLQ---DLVSTNPQ 608
SP +H LQ L S +PQ
Sbjct: 480 LSSPLTIHPLQALSSLASHSPQ 501
Score = 34.3 bits (77), Expect = 0.37
Identities = 60/235 (25%), Positives = 76/235 (32%), Gaps = 24/235 (10%)
Query: 372 EPPPSVNRVPPSSPSS--QEPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDG 429
E P S+ PP +P + P G P P S P L P Q
Sbjct: 582 ETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPL----QAPPSPP 637
Query: 430 AGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRSLRPD 489
A + +T P + L + PF+P P A P P + A P S P
Sbjct: 638 ASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPP 697
Query: 490 GMNPAPQLQDEIQPQLPLLMHLQAA---------MANPRALQALRQIEQGLQVLATEAPR 540
+ AP LQ P M A A P + + AT PR
Sbjct: 698 SL-AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPR 756
Query: 541 LLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPALDSAELGFL-SPP 594
+ P LA P+ PL PPP+ PAL + L L SPP
Sbjct: 757 V----PPLLAAPPLQVPPSPPASLPM---SPLAKPPPQAPPALATPPLQALPSPP 804
Score = 31.6 bits (70), Expect = 2.4
Identities = 61/264 (23%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 361 QGTASALSQSQEPPPSVNRVPP-------SSPSSQEPGSGQPLPEESVAIKGRSSCPAFL 413
Q S + + PPS+ +PP +SPS Q P P P +++ +S +
Sbjct: 367 QAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAP----PSPLALSSLQATTSLGSPT 422
Query: 414 RYPTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPE 473
T + Q A +S + P L + PL S + A+ +
Sbjct: 423 LQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLSPAVSPLSS 482
Query: 474 PPWLPSPAYPRSLRPDGMNPAPQLQDEIQPQL--------PLLMHLQAAMANPRALQALR 525
P + SL +P L I P L P L A++ P
Sbjct: 483 PLTIHPLQALSSLASH--SPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPS 540
Query: 526 QIEQGLQVLATEAPRLLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPALDS 585
LQ + L PC A A P + + PPP+ PAL S
Sbjct: 541 LAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALAS 600
Query: 586 AEL-GFLSPPFLHMLQDLVSTNPQ 608
L G SPP L L + PQ
Sbjct: 601 PPLQGLPSPP----LSPLATPPPQ 620
Score = 31.6 bits (70), Expect = 2.4
Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 7/141 (4%)
Query: 367 LSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGD 426
+S S PPP V + + P P LP +A + PA P +
Sbjct: 747 MSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPAS 806
Query: 427 QDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAI-PGIPEPPWLPSPAYPRS 485
G S S +LP +S L + P P+ +P + P P P L +P P +
Sbjct: 807 FPGQAPFSP--SASLP--MSPLATPPPQAP--PVLAAPLLQVPPSPPASPTLQAPRRPPT 860
Query: 486 LRPDGMNPAPQLQDEIQPQLP 506
PD P+L + P P
Sbjct: 861 PGPDTSVSGPRLTLALAPGPP 881
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 45.1 bits (105), Expect = 2e-04
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 32/172 (18%)
Query: 359 YLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPE---ESVAIKGRSSCPAFLRY 415
YLQG A S +Q P P +PS PG PL + +S+++ G P L Y
Sbjct: 278 YLQGGQYAPSTAQFAPSPGQ---PPAPSPSYPGHRLPLQQGMTQSLSVPG----PTGLHY 330
Query: 416 -PTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEP 474
PTE GQG +G S + GL +P P S +PG P P
Sbjct: 331 KPTEQFNGQGASFNGGSVSYSQ---------PGLSGPTRSIPGYPSS-----PLPGNPTP 376
Query: 475 PWLPSPAYPRSLRPDGMNPAPQLQDEIQPQL-PLLMHLQAAMANPRALQALR 525
P PS + P M+P +++ P L P L L ++ + LR
Sbjct: 377 PMTPSSSVPY------MSPNQEVKSPFLPDLKPNLNSLHSSPSGSGPCDELR 422
Score = 29.6 bits (65), Expect = 9.2
Identities = 39/131 (29%), Positives = 46/131 (35%), Gaps = 8/131 (6%)
Query: 381 PPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTEN--STGQGGDQDGAGKSSTGHS 438
PP S S P S E+S A PA PT N + G GA H
Sbjct: 779 PPISYQSDIPSS-LLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPGPQLHH 837
Query: 439 TNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPW---LPSPAYPRSLRPDGMNPAP 495
+N P A+ P L+FSP + G P P PA L P+ NP
Sbjct: 838 SNPPPASRQSLGQASLGPTGELAFSPATGVMGPPSMSGAGEAPEPAL--DLLPELTNPDE 895
Query: 496 QLQDEIQPQLP 506
L P LP
Sbjct: 896 LLSYLGPPDLP 906
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 44.7 bits (104), Expect = 3e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 10 QGSPAPVQDPHL-IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 67
+GSP P +++ VKT + K V + I+ +K +I + PDQ LIFAG
Sbjct: 56 RGSPVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAG 115
Query: 68 KILKDPDSLAQCGVRDGLTVHLVIK 92
K L+D +L+ C ++ T+HL+++
Sbjct: 116 KQLEDGRTLSDCNIQKEPTLHLLLR 140
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 44.7 bits (104), Expect = 3e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 10 QGSPAPVQDPHL-IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 67
+GSP P +++ VKT + K V + I+ +K +I + PDQ LIFAG
Sbjct: 56 RGSPVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAG 115
Query: 68 KILKDPDSLAQCGVRDGLTVHLVIK 92
K L+D +L+ C ++ T+HL+++
Sbjct: 116 KQLEDGRTLSDCNIQKEPTLHLLLR 140
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 44.7 bits (104), Expect = 3e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 10 QGSPAPVQDPHL-IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG 67
+GSP P +++ VKT + K V + I+ +K +I + PDQ LIFAG
Sbjct: 56 RGSPVPQSAAATKLQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAG 115
Query: 68 KILKDPDSLAQCGVRDGLTVHLVIK 92
K L+D +L+ C ++ T+HL+++
Sbjct: 116 KQLEDGRTLSDCNIQKEPTLHLLLR 140
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 613 EAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVE 650
++ +Q QL+QLR MG + E +L+AL ATGGD+ AA+E
Sbjct: 335 QSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 30.8 bits (68), Expect = 4.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 58 PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 92
P+ + LI+ G+ LKD +L G++ G TVH++ K
Sbjct: 58 PELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 613 EAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVE 650
++ +Q QL+QLR MG + E +L+AL ATGGD+ AA+E
Sbjct: 335 QSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALE 372
Score = 30.8 bits (68), Expect = 4.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 58 PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 92
P+ + LI+ G+ LKD +L G++ G TVH++ K
Sbjct: 58 PELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 42.0 bits (97), Expect = 0.002
Identities = 56/209 (26%), Positives = 75/209 (35%), Gaps = 27/209 (12%)
Query: 381 PPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTN 440
PP++PSSQ P P+ V + R + G + A S T
Sbjct: 136 PPAAPSSQPPPPSA-CPQRYVLSEDRRE-DRRADTSAHSKAGSSSPEPWARPSCTPQEGG 193
Query: 441 LP---DLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWL----PSPAYPRSLRPDGMNP 493
P + S + V L+ SP P +P PP L PSP P P
Sbjct: 194 CPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSP--------PP 245
Query: 494 APQLQDEIQPQLPLLMHLQAAMANPRALQALR-QIEQGLQVLATEAPRLLLWFMPCLAGT 552
P+ + P L L+A A++ L + QGL L+ LL P L GT
Sbjct: 246 PPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALL----PLLPGT 301
Query: 553 GSVAGGIESREDPLMSEDPLPNPPPEVFP 581
++S PL P P PP V P
Sbjct: 302 -----PVDSLPPPLPPPPPPPPPPRPVLP 325
Score = 37.7 bits (86), Expect = 0.034
Identities = 43/165 (26%), Positives = 61/165 (36%), Gaps = 27/165 (16%)
Query: 373 PPPSVNRVPPSSPSSQ---EPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTG----QGG 425
PPP +PP P +Q P S P P + FLR E + G
Sbjct: 220 PPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGT 279
Query: 426 DQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYPRS 485
+ G K S S LP L P P+ P P +P PP P P PR
Sbjct: 280 LRQGLAKLSEALSALLPLL-----------PGTPVDSLP----PPLPPPP--PPPPPPRP 322
Query: 486 LRPDGMNPAPQLQDEIQPQLPLLMHLQAAMANPRALQALRQIEQG 530
+ P PAP+++ +P + + A+ R + + E+G
Sbjct: 323 VLPP---PAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPRSEEG 364
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 41.6 bits (96), Expect = 0.002
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 38/226 (16%)
Query: 363 TASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTG 422
TAS S PPP PP P P PLP +S G S+ P F++Y T
Sbjct: 620 TASQPSPPLPPPPP----PPPPPPPPPPPPPPPLPSQSAPSAG-SAAPMFVKYSTITRLQ 674
Query: 423 QGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSPAY 482
GA P + S VP P +P P PP P+P
Sbjct: 675 NASQHSGA----LFKPPTPPVMQSQSVKPQILVP-------PNGVVPPPPPPPPPPTPGS 723
Query: 483 PRS-LRPDGMNPAPQLQDEIQPQLPLLMH-----LQAAMANPRALQALRQIEQGLQVLAT 536
+ L+P AP L P PL +H Q A P + L
Sbjct: 724 AMAQLKPAPC--APSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIP------APLPP 775
Query: 537 EAPRLLLWFMPCLAGTGSVAGGIESREDPLMSEDPLPNPPPEVFPA 582
+AP L +P T +VA P++++ P P P V PA
Sbjct: 776 QAPPKPLVTIPAPTSTKTVA--------PVVTQAAPPTPTPPVPPA 813
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 40.8 bits (94), Expect = 0.004
Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 12/203 (5%)
Query: 273 FGGNPFATATTDNATTTTSQPSRMENCDPLPNPWTSTH-----GGSGSRQGRQDGDQDAP 327
F +P +T TT TT+ +E P+ + S H GS +RQG Q P
Sbjct: 4418 FHSSPGSTETTLLPDNTTAS-GLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWP 4476
Query: 328 DIRNRFPNFLGIIRLYDYLQQL-HENPQSLGT-YLQGTASALSQSQEPPPSVNRVPPSSP 385
+ ++ P + L H +P S T + +++ L +S+E +V+ P ++
Sbjct: 4477 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEEST-TVHSSPVATA 4535
Query: 386 SSQEPGSGQP--LPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHS-TNLP 442
++ P L EES + +P N+T G++ SST H+ ++ P
Sbjct: 4536 TTPSPARSTTSGLVEESTTYHSSPGSTQTMHFPESNTTSGRGEESTTSHSSTTHTISSAP 4595
Query: 443 DLVSGLGDSANRVPFAPLSFSPT 465
S L + +P S + T
Sbjct: 4596 STTSALVEEPTSYHSSPGSTATT 4618
Score = 38.5 bits (88), Expect = 0.020
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 12/203 (5%)
Query: 273 FGGNPFATATTDNATTTTSQPSRMENCDPLPNPWTSTH-----GGSGSRQGRQDGDQDAP 327
F P +T TT TT+ +E P+ + S H GS +RQG Q P
Sbjct: 3335 FHSGPGSTETTLLPDNTTAS-GLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWP 3393
Query: 328 DIRNRFPNFLGIIRLYDYLQQL-HENPQSLGT-YLQGTASALSQSQEPPPSVNRVPPSSP 385
+ ++ P + L H +P S T + +++ L +S+E +V+ P ++
Sbjct: 3394 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEEST-TVHSSPVATA 3452
Query: 386 SSQEPGSGQP--LPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHS-TNLP 442
++ P L EES + +P ++T G++ SST H+ ++ P
Sbjct: 3453 TTPSPARSTTSGLVEESTTYHSSPGSTQTMHFPESDTTSGRGEESTTSHSSTTHTISSAP 3512
Query: 443 DLVSGLGDSANRVPFAPLSFSPT 465
S L + +P S + T
Sbjct: 3513 STTSALVEEPTSYHSSPGSTATT 3535
Score = 36.2 bits (82), Expect = 0.098
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 11/179 (6%)
Query: 273 FGGNPFATATTDNATTTTSQPSRMENCDPLPNPWTSTH-----GGSGSRQGRQDGDQDAP 327
F +P +T TT TT+ +E P+ + S H GS +RQG Q P
Sbjct: 1778 FHSSPGSTETTLLPDNTTAS-GLLEASTPVHSSTGSPHTTLSPAGSTTRQGESTTFQSWP 1836
Query: 328 DIRNRFPNFLGIIRLYDYLQQL-HENPQSLGT-YLQGTASALSQSQEPPPSVNRVPPSSP 385
++ P + L H +P S T + +++ L +S+E +V+ P ++
Sbjct: 1837 SSKDTMPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEEST-TVHSSPVATA 1895
Query: 386 SSQEPGSGQP--LPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTNLP 442
++ P L EES A + +P ++ ++ SST H+ + P
Sbjct: 1896 TTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSP 1954
Score = 31.6 bits (70), Expect = 2.4
Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 18/191 (9%)
Query: 279 ATATTDNATTTTSQPSRMENCDPLPNPWTSTHGGSGSRQGRQDGDQDAPDIRNRFPNFLG 338
A+ ++ +AT T P+R L TS G P + + F
Sbjct: 4635 ASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTALPGSTTTPGLSEKSTTF-- 4692
Query: 339 IIRLYDYLQQLHENPQSLGT-YLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQP-- 395
H +P S T + +++ L +S+E +V+ P ++ ++ P
Sbjct: 4693 -----------HSSPSSTPTTHFSASSTTLGRSEEST-TVHSSPVATATTPSPARSTTSG 4740
Query: 396 LPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHS-TNLPDLVSGLGDSANR 454
L EES A + +P ++ ++ SST H+ ++ P S L +
Sbjct: 4741 LVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEEPTS 4800
Query: 455 VPFAPLSFSPT 465
+P S + T
Sbjct: 4801 YHSSPGSIATT 4811
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 137 IQKESTLHLVLR 148
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 213 IQKESTLHLVLR 224
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 137 IQKESTLHLVLR 148
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 289 IQKESTLHLVLR 300
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 365 IQKESTLHLVLR 376
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 441 IQKESTLHLVLR 452
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 517 IQKESTLHLVLR 528
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 593 IQKESTLHLVLR 604
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 669 IQKESTLHLVLR 680
Score = 37.4 bits (85), Expect = 0.044
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + DQ LIFAGK L+D +L+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 213 IQKESTLHLVLR 224
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 40.4 bits (93), Expect = 0.005
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
+++ VKT K V + TI+ +K +I + PDQ LIFAGK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 81 VRDGLTVHLVIK 92
++ T+HLV++
Sbjct: 61 IQKESTLHLVLR 72
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 39.3 bits (90), Expect = 0.012
Identities = 59/215 (27%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 314 GSRQGRQDGDQDAPDIRNRFPNFLGIIRLYDYLQQLHENPQSL-------GTYL-QGTAS 365
G + G + ++R R P G RL + E P + G ++ G A+
Sbjct: 528 GETLAARPGMAHSEEVRARQPARAGCPRLGPAARGSLEGPSAPPQAALLPGNHVPNGCAA 587
Query: 366 ALSQSQE-PPPSVNRVPPSSPSSQEPGSGQPLPEESVA-----IKGRSSCPAFLRYPTEN 419
S+E PPP PP ++ P PLP ES + SS + + +
Sbjct: 588 DPKASRELPPPPPPPPPPLPEAASSPPPAPPLPLESAGPGCGQRRSSSSTGSTKSFNMMS 647
Query: 420 STGQGGD---QDGAGKS--STGHSTNLPDLVSGLGDSANRVPFAPL-SFSPTAAIPGIPE 473
TG + + AGKS T S L + SG+G A + P +PL S SP + P
Sbjct: 648 PTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGIGQPAFQ-PDSPLPSVSPALSPVRSPT 706
Query: 474 PPWLP-SPAYPRSLRP-DGMNPAPQLQDEIQPQLP 506
PP P SL P PAP +Q +++ +P
Sbjct: 707 PPAAGFQPLLNGSLVPVPPTTPAPGVQLDVEALIP 741
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 38.9 bits (89), Expect = 0.015
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 21 LIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 80
LIKV T K+ E + T ++++KE + ++ P Q LI++GK + D + A
Sbjct: 2 LIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 81 VRDGLTVHLVI 91
+ G +HLV+
Sbjct: 61 ILGGSVLHLVL 71
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 38.9 bits (89), Expect = 0.015
Identities = 38/139 (27%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 352 NPQSLGTYLQGTASALSQSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPA 411
+P+SL LQ AL+Q + PP R PP P G P S I G + P
Sbjct: 7 SPRSLLVLLQVVVLALAQIRGPPGE--RGPPGPP-------GPPGVPGSDGIDGDNGPPG 57
Query: 412 FLRYPTENSTGQGGDQDGAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGI 471
P G G+ AG + L G+ P+ PG+
Sbjct: 58 KAGPP-----GPKGEPGKAGPDGPDGKPGIDGLTGAKGEPG------PMGIPGVKGQPGL 106
Query: 472 PEPPWLPSPAYPRSLRPDG 490
P PP LP P + P G
Sbjct: 107 PGPPGLPGPGFAGPPGPPG 125
>gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 38.5 bits (88), Expect = 0.020
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 329 IRNRFPNFLGIIRLYDYLQQLHENPQSLGTYLQGTASALSQSQEPPPSVNRVPPSSPSSQ 388
+ R P+FL ++RL ++ + SL QG A A + + P+ + P+ +
Sbjct: 453 LERRPPDFLRLLRL---IRDMEAWAASLARSQQGVAWAAAPVESEDPAAAQASPAQGDAS 509
Query: 389 EPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTNLP-DLVSG 447
E G +E+ + ++ A EN+ +G G+ G S + P L +
Sbjct: 510 EADPGAEDADEAASTTKEAARVAPATGEDENAP---AGLEGLGQ---GRSPDAPGGLPAR 563
Query: 448 LGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYP 483
+G + + P P S+ P + G PW P PA P
Sbjct: 564 MGSAVDMAPGGP-SWEPEGLVQG----PWPPPPALP 594
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 38.5 bits (88), Expect = 0.020
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 15/156 (9%)
Query: 329 IRNRFPNFLGIIRLYDYLQQLHENPQSLGTYLQGTASALSQSQEPPPSVNRVPPSSPSSQ 388
+ R P+FL ++RL ++ + SL QG A A + + P+ + P+ +
Sbjct: 393 LERRPPDFLRLLRL---IRDMEAWAASLARSQQGVAWAAAPVESEDPAAAQASPAQGDAS 449
Query: 389 EPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGDQDGAGKSSTGHSTNLP-DLVSG 447
E G +E+ + ++ A EN+ +G G+ G S + P L +
Sbjct: 450 EADPGAEDADEAASTTKEAARVAPATGEDENAP---AGLEGLGQ---GRSPDAPGGLPAR 503
Query: 448 LGDSANRVPFAPLSFSPTAAIPGIPEPPWLPSPAYP 483
+G + + P P S+ P + G PW P PA P
Sbjct: 504 MGSAVDMAPGGP-SWEPEGLVQG----PWPPPPALP 534
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 38.5 bits (88), Expect = 0.020
Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 369 QSQEPPPSVNRVPPSSPSSQEPGSGQPLPEESVAIKGRSSCPAFLRYPTENSTGQGGDQD 428
Q Q+PPP++ PP S G+ P +A+ S PA P +
Sbjct: 988 QQQQPPPAL---PPGSQPIPPTGAAGPPAVHGLAVAPASVVPA----PAGS--------- 1031
Query: 429 GAGKSSTGHSTNLPDLVSGLGDSANRVPFAPLSFSPTAAIPGIPEP-PWLPSPAYPRSLR 487
GA S G S + S G + AP P A PG+P P P PSP +P
Sbjct: 1032 GAPPGSLGPSEQIGQAGSTAGPQQQQPAGAP---QPGAVPPGVPPPGPHGPSP-FPNQQT 1087
Query: 488 PDGMNP 493
P M P
Sbjct: 1088 PPSMMP 1093
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,821,073
Number of Sequences: 37866
Number of extensions: 1784437
Number of successful extensions: 10426
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 408
Number of HSP's that attempted gapping in prelim test: 8983
Number of HSP's gapped (non-prelim): 1784
length of query: 655
length of database: 18,247,518
effective HSP length: 109
effective length of query: 546
effective length of database: 14,120,124
effective search space: 7709587704
effective search space used: 7709587704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.