Search of human proteins with 84370276

Search of human proteins with 84370276

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|84370276 LysM, putative peptidoglycan-binding, domain
containing 3 [Homo sapiens]
         (306 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|84370276 LysM, putative peptidoglycan-binding, domain contain...   615   e-176
gi|40288201 LysM, putative peptidoglycan-binding, domain contain...    89   6e-18
gi|47086487 LysM, putative peptidoglycan-binding, domain contain...    40   0.002
gi|23503313 LysM, putative peptidoglycan-binding, domain contain...    40   0.003
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]    32   0.54 
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]    32   0.54 
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC...    32   0.92 
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC...    32   0.92 
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi...    30   2.0  
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   3.5  
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   3.5  
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H...    30   3.5  
gi|95147555 microtubule-associated protein 1A [Homo sapiens]           30   3.5  
gi|122937273 hypothetical protein LOC131149 [Homo sapiens]             30   3.5  
gi|19718746 oxysterol-binding protein-like 1A isoform A [Homo sa...    29   6.0  
gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo sa...    29   6.0  
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           29   6.0  
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           29   6.0  
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi...    29   6.0  
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]          29   6.0  
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]          29   6.0  
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]          29   6.0  
gi|4505105 MAS1 oncogene [Homo sapiens]                                28   7.8  
gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens]     28   7.8  

>gi|84370276 LysM, putative peptidoglycan-binding, domain containing
           3 [Homo sapiens]
          Length = 306

 Score =  615 bits (1587), Expect = e-176
 Identities = 306/306 (100%), Positives = 306/306 (100%)

Query: 1   MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD 60
           MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD
Sbjct: 1   MAGRHQNRSFPLPGVQSSGQVHAFGNCSDSDILEEDAEVYELRSRGKEKVRRSTSRDRLD 60

Query: 61  DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET 120
           DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET
Sbjct: 61  DIIVLTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTET 120

Query: 121 LCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRE 180
           LCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRE
Sbjct: 121 LCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRE 180

Query: 181 NLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYY 240
           NLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYY
Sbjct: 181 NLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYY 240

Query: 241 EILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKGIHFSQQDDHKLYSQDSQSP 300
           EILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKGIHFSQQDDHKLYSQDSQSP
Sbjct: 241 EILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKGIHFSQQDDHKLYSQDSQSP 300

Query: 301 AAQQET 306
           AAQQET
Sbjct: 301 AAQQET 306


>gi|40288201 LysM, putative peptidoglycan-binding, domain containing
           4 [Homo sapiens]
          Length = 297

 Score = 88.6 bits (218), Expect = 6e-18
 Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 86  VADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQT-SRHSSVQYSSEQQEI 144
           VADIK+VNN I +QD +AL+S+KIPV+    L ET    K   + S  ++V     + + 
Sbjct: 96  VADIKKVNNFIREQDLYALKSVKIPVRNHGILMETHKELKPLLSPSSETTVTVELPEADR 155

Query: 145 LPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQ 204
             A          G F K +D+DIE+ V+        L+E     T+ Q       K   
Sbjct: 156 AGAGTGAQAGQLMG-FFKGIDQDIERAVQ----SEIFLHESYCMDTSHQPLLPAPPKT-- 208

Query: 205 RKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYYEILA 244
              P  GAD GI WW AV IML++GI+ PVFYL+Y++I A
Sbjct: 209 ---PMDGADCGIQWWNAVFIMLLIGIVLPVFYLVYFKIQA 245


>gi|47086487 LysM, putative peptidoglycan-binding, domain containing
           1 isoform a [Homo sapiens]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 22/136 (16%)

Query: 65  LTKDIQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPV-----KKFSSLT- 118
           L   ++ GDTL  +AL+Y  T+  IKR N L ++   F  +++ IP+       F+ L  
Sbjct: 40  LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEPRDLFNGLDS 99

Query: 119 ------ETLCPPKGRQTSRHSSVQYSSE------QQEILPA----NDSLAYSDSAGSFLK 162
                 E    P   +   HS+ +   E        E+LP       +  +  SA  FLK
Sbjct: 100 EEEKDGEEKVHPSNSEVWPHSTERKKQETGAGRANGEVLPTPGQETPTPIHDLSASDFLK 159

Query: 163 EVDRDIEQIVKCTDNK 178
           ++D  I    K    K
Sbjct: 160 KLDSQISLSKKAAAQK 175


>gi|23503313 LysM, putative peptidoglycan-binding, domain containing
           2 isoform 1 [Homo sapiens]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 69  IQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKK-----FSSLTETLCP 123
           ++ GDTL  IAL+Y  T+  IKR N L ++   F  +++ IPV       F+ L     P
Sbjct: 75  VRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSP 134

Query: 124 PKGRQTSRHSSVQYSSEQQEILPAND----SLAYSD---------SAGSFLKEVDRDIEQ 170
               +T+ +S   +S E++ ++   D    S   SD         SA  FL+ +D  I+ 
Sbjct: 135 E--NETADNS---FSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKL 189

Query: 171 IVKCTDNKRE 180
             +     +E
Sbjct: 190 STQAAKKLKE 199


>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
          Length = 814

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 124 PKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVK 173
           P G+QT+ HSSV   + Q++  P  + L   ++A   L+E ++D++  V+
Sbjct: 33  PPGQQTTAHSSVLAGNSQEQWHPLREWLGRLEAAVMELREQNKDLQTRVR 82


>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
          Length = 1503

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 124 PKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVK 173
           P G+QT+ HSSV   + Q++  P  + L   ++A   L+E ++D++  V+
Sbjct: 33  PPGQQTTAHSSVLAGNSQEQWHPLREWLGRLEAAVMELREQNKDLQTRVR 82


>gi|90669228 deleted in lung and esophageal cancer 1 isoform
           DLEC1-S3 [Homo sapiens]
          Length = 1778

 Score = 31.6 bits (70), Expect = 0.92
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 30/205 (14%)

Query: 24  FGNCSDSDILEEDAEVYELRSRGKEKVR-----------RSTSRDRLDDIIVLTKDIQEG 72
           F N   ++++ ++     +++RG E  R           R   + RLD+  +L + I + 
Sbjct: 100 FRNLYSAEVIGDEVSASLIKARGSENERHEEFVDQLQQIRELYKQRLDEFEMLERHITQA 159

Query: 73  DTLNAIA-------------LQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTE 119
               AIA             L+    +  +K V+    D +      +  P   ++    
Sbjct: 160 QA-RAIAENERVMSQAGVQDLESLVRLPPVKSVSRWCIDSELLRKHHLISPEDYYTDTVP 218

Query: 120 TLCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKR 179
               PKG      S + +S E++ +     +    DS    L E + +++  V   D+  
Sbjct: 219 FHSAPKGISLPGCSKLTFSCEKRSVQKKELNKKLEDSCRKKLAEFEDELDHTV---DSLT 275

Query: 180 ENLNEVVSALTAQQMR--FEPDNKN 202
            NL       T + ++   +P NKN
Sbjct: 276 WNLTPKAKERTREPLKKASQPRNKN 300


>gi|90669194 deleted in lung and esophageal cancer 1 isoform
           DLEC1-N1 [Homo sapiens]
          Length = 1755

 Score = 31.6 bits (70), Expect = 0.92
 Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 30/205 (14%)

Query: 24  FGNCSDSDILEEDAEVYELRSRGKEKVR-----------RSTSRDRLDDIIVLTKDIQEG 72
           F N   ++++ ++     +++RG E  R           R   + RLD+  +L + I + 
Sbjct: 100 FRNLYSAEVIGDEVSASLIKARGSENERHEEFVDQLQQIRELYKQRLDEFEMLERHITQA 159

Query: 73  DTLNAIA-------------LQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTE 119
               AIA             L+    +  +K V+    D +      +  P   ++    
Sbjct: 160 QA-RAIAENERVMSQAGVQDLESLVRLPPVKSVSRWCIDSELLRKHHLISPEDYYTDTVP 218

Query: 120 TLCPPKGRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKR 179
               PKG      S + +S E++ +     +    DS    L E + +++  V   D+  
Sbjct: 219 FHSAPKGISLPGCSKLTFSCEKRSVQKKELNKKLEDSCRKKLAEFEDELDHTV---DSLT 275

Query: 180 ENLNEVVSALTAQQMR--FEPDNKN 202
            NL       T + ++   +P NKN
Sbjct: 276 WNLTPKAKERTREPLKKASQPRNKN 300


>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
           sapiens]
          Length = 1435

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 126 GRQTSRHSSVQYSSEQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEV 185
           G  +     V YS  Q + +P+    A   ++ S       D +Q +  T+N+RE+  + 
Sbjct: 700 GPLSPEEEDVFYSDSQSDFMPSLKGKAKFSTSSSDQSFASFDDQQKMWFTENQREDRRKD 759

Query: 186 VSALTAQQMRFEPDNKNTQRKD 207
           VSA  +Q    + + +N  RKD
Sbjct: 760 VSAGDSQ----KDEKENVMRKD 777


>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 2 [Homo sapiens]
          Length = 2472

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 33  LEEDAEVYELRSRGKEKVRRSTSRDRLDDIIVLTKDIQEGDTLNAIALQYCCTVADIKRV 92
           L  D E  E   R KE +  ST+R +  D+I +   +++   L A    +   +  + + 
Sbjct: 789 LFRDVEDEETWIREKEPIAASTNRGK--DLIGVQNLLKKHQALQAEIAGHEPRIKAVTQK 846

Query: 93  NNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPANDSLA 152
            N + ++  FA   +K  + + +   E L   K + + R   ++ S      L A    A
Sbjct: 847 GNAMVEEGHFAAEDVKAKLHELNQKWEAL---KAKASQRRQDLEDS------LQAQQYFA 897

Query: 153 YSDSAGSFLKEVDRDIEQIVKCTD 176
            ++ A S+++E     E IV  TD
Sbjct: 898 DANEAESWMREK----EPIVGSTD 917


>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 1 [Homo sapiens]
          Length = 2477

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 33  LEEDAEVYELRSRGKEKVRRSTSRDRLDDIIVLTKDIQEGDTLNAIALQYCCTVADIKRV 92
           L  D E  E   R KE +  ST+R +  D+I +   +++   L A    +   +  + + 
Sbjct: 789 LFRDVEDEETWIREKEPIAASTNRGK--DLIGVQNLLKKHQALQAEIAGHEPRIKAVTQK 846

Query: 93  NNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPANDSLA 152
            N + ++  FA   +K  + + +   E L   K + + R   ++ S      L A    A
Sbjct: 847 GNAMVEEGHFAAEDVKAKLHELNQKWEAL---KAKASQRRQDLEDS------LQAQQYFA 897

Query: 153 YSDSAGSFLKEVDRDIEQIVKCTD 176
            ++ A S+++E     E IV  TD
Sbjct: 898 DANEAESWMREK----EPIVGSTD 917


>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
           sapiens]
          Length = 1447

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 40/185 (21%)

Query: 89  IKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPAN 148
           +K +++ IS ++   +R +K+ VK F  + +                   SE+++ L  N
Sbjct: 19  VKEISDKISKEEM--VRRLKMVVKTFMDMDQ------------------DSEEEKELYLN 58

Query: 149 DSLAYSDSAGSFLKEVDRDIEQIVKC-------------TDNKRENLNEVVSALTAQQMR 195
             LA   ++  FLK  D+D+  +V C                  + L ++   +T Q   
Sbjct: 59  --LALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKG 116

Query: 196 FEPDNKNTQRKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYYEILAKVDVSHHSTVD 255
            E D K+ Q    +Y  +  I W  +  I   +     +F  LY  + + ++  H+  V 
Sbjct: 117 LE-DTKSPQFNRYFYLLE-NIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKV- 173

Query: 256 SSHLH 260
             H+H
Sbjct: 174 --HMH 176


>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
          Length = 2803

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 161  LKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQRKD 207
            L+E D+ +EQ  K  + K + L +  +AL  +    EP +K+ ++KD
Sbjct: 1436 LEEKDKALEQKDKIPEEKDKALEQKDTALEQKDKALEPKDKDLEQKD 1482



 Score = 28.5 bits (62), Expect = 7.8
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 140  EQQEILPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPD 199
            E +E++   D+  Y       +K  +  ++Q  K  + K  +L +  +AL  +    EP 
Sbjct: 1375 EHKEVVEPKDTAIYQKDEALHVK--NEAVKQQDKALEQKGRDLEQKDTALEQKDKALEPK 1432

Query: 200  NKNTQRKD 207
            +K+ + KD
Sbjct: 1433 DKDLEEKD 1440


>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
          Length = 477

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 242 ILAKVDVSHHSTVDSSHLHSKITPPSQQREMENGIVPTKG 281
           IL  + ++  +T+  +  H+K T  S++REM  G+ P+ G
Sbjct: 10  ILIILAIAGMNTIAKTTPHTKFTKKSEEREMPKGLKPSSG 49


>gi|19718746 oxysterol-binding protein-like 1A isoform A [Homo
           sapiens]
          Length = 437

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 146 PANDSLAYS-DSAGSFLKEVDRDIEQIVKCTDNK-----RENLNEVVSALTAQQMRFEPD 199
           P N +  Y+  S    L EVD+D+E ++  TD +     R   N  +   + ++ R E  
Sbjct: 327 PPNSAQMYNFTSFAMVLNEVDKDMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEK 386

Query: 200 NKNTQRKDPYYGADWGIGWW 219
            +  ++       DW   W+
Sbjct: 387 QRAARKNRSKSEEDWKTRWF 406


>gi|19718741 oxysterol-binding protein-like 1A isoform B [Homo
           sapiens]
          Length = 950

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 146 PANDSLAYS-DSAGSFLKEVDRDIEQIVKCTDNK-----RENLNEVVSALTAQQMRFEPD 199
           P N +  Y+  S    L EVD+D+E ++  TD +     R   N  +   + ++ R E  
Sbjct: 840 PPNSAQMYNFTSFAMVLNEVDKDMESVIPKTDCRLRPDIRAMENGEIDQASEEKKRLEEK 899

Query: 200 NKNTQRKDPYYGADWGIGWW 219
            +  ++       DW   W+
Sbjct: 900 QRAARKNRSKSEEDWKTRWF 919


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 252  STVDSSHLHSKITPPSQQREME-NGIVPTKGIHFSQQDDHKLYSQDSQSPAAQQET 306
            +T D+ H     T PS   E +  G +P K IH     ++ L S+D++ P   +E+
Sbjct: 1633 TTQDTEHDMVISTSPSGGSEADIEGPLPAKDIHLDLPSNNNLVSKDTEEPLPVKES 1688


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 252  STVDSSHLHSKITPPSQQREME-NGIVPTKGIHFSQQDDHKLYSQDSQSPAAQQET 306
            +T D+ H     T PS   E +  G +P K IH     ++ L S+D++ P   +E+
Sbjct: 1633 TTQDTEHDMVISTSPSGGSEADIEGPLPAKDIHLDLPSNNNLVSKDTEEPLPVKES 1688


>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
           2) [Homo sapiens]
          Length = 116

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 164 VDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQRKDPYYGADWGIGWWTAVV 223
           VD+ +E+     D K   L++   AL A   +FE      +RK           WW  + 
Sbjct: 50  VDKVLER-----DQKLSELDDRADALQAGASQFETSAAKLKRKY----------WWKNLK 94

Query: 224 IMLIVGIITPVFYLL 238
           +M+I+G+I  +  ++
Sbjct: 95  MMIILGVICAIILII 109


>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
          Length = 1012

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/110 (19%), Positives = 50/110 (45%)

Query: 89  IKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPAN 148
           +K+    + ++    L+S K   +K +S TE       ++T      + +S  +    ++
Sbjct: 75  VKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESS 134

Query: 149 DSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEP 198
           DS + +D   S  K++D+D         + ++N ++  S+   Q ++ +P
Sbjct: 135 DSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQP 184


>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/110 (19%), Positives = 50/110 (45%)

Query: 89  IKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPAN 148
           +K+    + ++    L+S K   +K +S TE       ++T      + +S  +    ++
Sbjct: 629 VKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESS 688

Query: 149 DSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEP 198
           DS + +D   S  K++D+D         + ++N ++  S+   Q ++ +P
Sbjct: 689 DSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQP 738


>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
          Length = 1566

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/110 (19%), Positives = 50/110 (45%)

Query: 89  IKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQTSRHSSVQYSSEQQEILPAN 148
           +K+    + ++    L+S K   +K +S TE       ++T      + +S  +    ++
Sbjct: 629 VKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESS 688

Query: 149 DSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEP 198
           DS + +D   S  K++D+D         + ++N ++  S+   Q ++ +P
Sbjct: 689 DSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQP 738


>gi|4505105 MAS1 oncogene [Homo sapiens]
          Length = 325

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 222 VVIMLIVGIITPVFYLLYYEILAKVDVSHHSTVDSSHLHSKITP 265
           ++I LI  +   + YLLYYE  +     HH ++  S ++S   P
Sbjct: 234 IIIFLIFAMPMRLLYLLYYEYWSTFGNLHHISLLFSTINSSANP 277


>gi|52630429 nuclear factor, interleukin 3 regulated [Homo sapiens]
          Length = 462

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 34  EEDAEVYELRSRGKEKVRRSTSRDRLDDIIVLTKDIQEGD 73
           ++DA  +E R +  E  +RS  + RL+D+++  K I  G+
Sbjct: 71  KKDAMYWEKRRKNNEAAKRSREKRRLNDLVLENKLIALGE 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,272,669
Number of Sequences: 37866
Number of extensions: 464328
Number of successful extensions: 1502
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 32
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.