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Search of human proteins with 8393116
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8393116 chromatin accessibility complex 1 [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8393116 chromatin accessibility complex 1 [Homo sapiens] 255 8e-69
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 59 1e-09
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 59 1e-09
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 59 1e-09
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 59 1e-09
gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens] 57 5e-09
gi|18426973 DR1-associated protein 1 [Homo sapiens] 40 7e-04
gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens] 40 7e-04
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 35 0.022
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 34 0.037
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 33 0.049
gi|145309311 ubiquitin specific protease 9, X-linked isoform 4 [... 33 0.049
gi|145309309 ubiquitin specific protease 9, X-linked isoform 3 [... 33 0.049
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 32 0.14
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 32 0.14
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 32 0.14
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 32 0.14
gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens] 32 0.19
gi|4504425 high-mobility group box 1 [Homo sapiens] 31 0.24
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 31 0.24
gi|54633315 deoxynucleotidyltransferase, terminal, interacting p... 31 0.24
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 31 0.24
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 31 0.24
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 31 0.24
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 31 0.32
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 31 0.32
gi|48762709 SAM domain, SH3 domain and nuclear localization sign... 31 0.32
gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens] 30 0.41
gi|167466187 integrin-binding sialoprotein precursor [Homo sapiens] 30 0.54
gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens] 30 0.54
>gi|8393116 chromatin accessibility complex 1 [Homo sapiens]
Length = 131
Score = 255 bits (651), Expect = 8e-69
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS 60
MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS
Sbjct: 1 MADVVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYS 60
Query: 61 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN 120
YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN
Sbjct: 61 YRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDN 120
Query: 121 DNESDHDEADS 131
DNESDHDEADS
Sbjct: 121 DNESDHDEADS 131
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 58.9 bits (141), Expect = 1e-09
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
R+ LPL+RI+ IMK +V I+ EA VL AKA ++F+ L ++ H +++ L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 75 SDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREED 115
+D+A + + F FL DI+P+ LK KR+E+
Sbjct: 99 NDIAMAITKFDQFDFLIDIVPR--------DELKPPKRQEE 131
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 58.9 bits (141), Expect = 1e-09
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
R+ LPL+RI+ IMK +V I+ EA VL AKA ++F+ L ++ H +++ L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 75 SDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREED 115
+D+A + + F FL DI+P+ LK KR+E+
Sbjct: 99 NDIAMAITKFDQFDFLIDIVPR--------DELKPPKRQEE 131
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 58.9 bits (141), Expect = 1e-09
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
R+ LPL+RI+ IMK +V I+ EA VL AKA ++F+ L ++ H +++ L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 75 SDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREED 115
+D+A + + F FL DI+P+ LK KR+E+
Sbjct: 99 NDIAMAITKFDQFDFLIDIVPR--------DELKPPKRQEE 131
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 58.9 bits (141), Expect = 1e-09
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
R+ LPL+RI+ IMK +V I+ EA VL AKA ++F+ L ++ H +++ L
Sbjct: 39 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQR 98
Query: 75 SDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREED 115
+D+A + + F FL DI+P+ LK KR+E+
Sbjct: 99 NDIAMAITKFDQFDFLIDIVPR--------DELKPPKRQEE 131
>gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens]
Length = 117
Score = 56.6 bits (135), Expect = 5e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 15 RLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTY 74
RL LPL+R++ ++K+ P+V+ QEA+ + A+A ELFV+ +A +Y ++K L
Sbjct: 37 RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96
Query: 75 SDLANTAQQSETFQFLADIL 94
DL N + + F FL L
Sbjct: 97 RDLDNAIEAVDEFAFLEGTL 116
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 39.7 bits (91), Expect = 7e-04
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 20 PLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLAN 79
P +RI+ IM++ E+ + V+ ++A ELF++ L + + + K +T S L
Sbjct: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
Query: 80 TAQQSETFQFLADIL 94
+ + F FL D++
Sbjct: 73 CIELEQQFDFLKDLV 87
>gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens]
Length = 147
Score = 39.7 bits (91), Expect = 7e-04
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 17 ISLPLSRI-RVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYS 75
++LP + I R+I ++ P+ +I++EA ++A +FV + + ++K L S
Sbjct: 8 LNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNAS 67
Query: 76 DLANTAQQSETFQFLADILPKKILASKYLKMLKEEKR-EEDEENDNDNESDHDEAD 130
D+ + ++ E +F + P K Y + K +K E ++ D D ++D +E D
Sbjct: 68 DVLSAMEEMEFQRF---VTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD 120
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 34.7 bits (78), Expect = 0.022
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 63 HGSGKEKKVLTYSDLANTAQQS-------ETFQFLADILPKKILASKYLKMLKEEKREED 115
H GKEK V + T S E F+ +P + + +E+ EED
Sbjct: 560 HSQGKEKAVSNNVNPVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEED 619
Query: 116 EENDNDNESDHDEADS 131
EE+D D+ESD +++S
Sbjct: 620 EEDDEDDESDDSQSES 635
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 33.9 bits (76), Expect = 0.037
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 4 VVVGKDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRH 63
V+ KD G Q LS + + + S E+ + L+ + + + + YR
Sbjct: 1394 VINYKDSSGRQ------LSEVFIQLPSRKELPEYYE--LIRKPVDFKKIKERIRNHKYRS 1445
Query: 64 GSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREEDEENDNDNE 123
EK V+ A T + + I+ + + S K+ KEE+ EDE N+ + E
Sbjct: 1446 LGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEE-SEDESNEEEEE 1504
Query: 124 SDHDEADS 131
D +E++S
Sbjct: 1505 EDEEESES 1512
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 33.5 bits (75), Expect = 0.049
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 56 LATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREED 115
+ + YR EK V+ A T + + I+ + + S K+ KEE+ ED
Sbjct: 1456 IRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEE-SED 1514
Query: 116 EENDNDNESDHDEADS 131
E N+ + E D +E++S
Sbjct: 1515 ESNEEEEEEDEEESES 1530
>gi|145309311 ubiquitin specific protease 9, X-linked isoform 4
[Homo sapiens]
Length = 2554
Score = 33.5 bits (75), Expect = 0.049
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKK 70
G E+ + +L + R+++I++ ++SS N + L + ++ Y++RHG+ +E++
Sbjct: 323 GQEETVKNLEIFRLKMILRLL-QISSFNGKMNALNE--VNKVISSVSYYTHRHGNPEEEE 379
Query: 71 VLTYSDLANTAQQSETFQF-LADILPKKILASKYLKMLK---EEKREEDEENDN 120
LT +A QQ+ L D L + K K+L+ +EK ++ DN
Sbjct: 380 WLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDN 433
>gi|145309309 ubiquitin specific protease 9, X-linked isoform 3
[Homo sapiens]
Length = 2570
Score = 33.5 bits (75), Expect = 0.049
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKK 70
G E+ + +L + R+++I++ ++SS N + L + ++ Y++RHG+ +E++
Sbjct: 323 GQEETVKNLEIFRLKMILRLL-QISSFNGKMNALNE--VNKVISSVSYYTHRHGNPEEEE 379
Query: 71 VLTYSDLANTAQQSETFQF-LADILPKKILASKYLKMLK---EEKREEDEENDN 120
LT +A QQ+ L D L + K K+L+ +EK ++ DN
Sbjct: 380 WLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDN 433
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 109 EEKREEDEENDNDNESDHDEADS 131
EE+ EE+EE D D + D DEA S
Sbjct: 185 EEEEEEEEEEDEDEDEDEDEAGS 207
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 109 EEKREEDEENDNDNESDHDEADS 131
EE+ EE+EE D D + D DEA S
Sbjct: 144 EEEEEEEEEEDEDEDEDEDEAGS 166
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 32.0 bits (71), Expect = 0.14
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 109 EEKREEDEENDNDNESDHDEADS 131
EE+ EE+EE D D + D DEA S
Sbjct: 137 EEEEEEEEEEDEDEDEDEDEAGS 159
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 32.0 bits (71), Expect = 0.14
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 26 VIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSE 85
++M S E EA +L +CLA+ S G+ + + ++ +
Sbjct: 1780 LLMSISKEGELCCSEAGQRPENIGQLEAKCLASPSLNPGNESGFVDMCSLSVCDSKRNLS 1839
Query: 86 TFQFLADILPKKILASK-YLKMLKEEKREEDEENDNDN 122
+ Q L D+L K L SK L ++ EE+EEN+ +N
Sbjct: 1840 SDQQLIDLLENKSLESKLILSQNHSDEEEEEEENEEEN 1877
>gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]
Length = 471
Score = 31.6 bits (70), Expect = 0.19
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 107 LKEEKREEDEENDNDNESDHDEAD 130
++EE+ EE+EE+++D+ +D DE+D
Sbjct: 423 MEEEEEEEEEEDEDDDSADMDESD 446
Score = 26.2 bits (56), Expect = 7.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 108 KEEKREEDEENDNDNESDHDEAD 130
+EE+ EEDE++D+ + + DE D
Sbjct: 427 EEEEEEEDEDDDSADMDESDEDD 449
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 31.2 bits (69), Expect = 0.24
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 92 DILPKKILASKYLKMLKEEKREEDEENDNDNESDHDEAD 130
D K ++ ++ K KEE+ +E++E D + E D ++ D
Sbjct: 169 DAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
Score = 28.5 bits (62), Expect = 1.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 108 KEEKREEDEENDNDNESDHDE 128
++E+ EEDEE++++ E D DE
Sbjct: 195 EDEEEEEDEEDEDEEEDDDDE 215
Score = 26.9 bits (58), Expect = 4.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 108 KEEKREEDEENDNDNESDHDE 128
+E++ EE++E D D E D D+
Sbjct: 194 EEDEEEEEDEEDEDEEEDDDD 214
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 31.2 bits (69), Expect = 0.24
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 97 KILASKYLKMLKEEKREEDEENDNDNESDHDE 128
++ A + LK +EE+ EE+EE D++ E DE
Sbjct: 260 RVRADRNLKTEEEEEEEEEEEEDDEEEEGDDE 291
>gi|54633315 deoxynucleotidyltransferase, terminal, interacting
protein 2 [Homo sapiens]
Length = 756
Score = 31.2 bits (69), Expect = 0.24
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 107 LKEEKREEDEENDNDNESDHDE 128
++EEK EE++E ++ SDHDE
Sbjct: 516 IEEEKEEEEDEKSEEDSSDHDE 537
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 31.2 bits (69), Expect = 0.24
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 98 ILASKYLKMLKEEKREEDEEN-------DNDNESDHDEAD 130
+ A+K K +EE+ EEDEE+ D D E D DE D
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEED 351
Score = 27.7 bits (60), Expect = 2.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 108 KEEKREEDEENDNDNESDHDEADS 131
+EEK E+++E D+++E D D+ S
Sbjct: 334 EEEKDEDEDEEDDEDEEDGDDEQS 357
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 31.2 bits (69), Expect = 0.24
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 96 KKILASKYLKMLKEEKREEDEENDNDNESDHDE 128
K+++ ++ K KEE+ +E++E + +NE D D+
Sbjct: 847 KRVVKAEKSKKKKEEEEDEEDEQEEENEEDDDK 879
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 31.2 bits (69), Expect = 0.24
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 96 KKILASKYLKMLKEEKREEDEENDNDNESDHDEAD 130
K ++ ++ K KEE+ +E++E D + E + DE D
Sbjct: 173 KGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEED 207
Score = 26.9 bits (58), Expect = 4.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 100 ASKYLKMLKEEKREEDEENDNDNESDHDEAD 130
A K + ++ K++++EE D ++E D +E D
Sbjct: 171 AKKGVVKAEKSKKKKEEEEDEEDEEDEEEED 201
Score = 26.9 bits (58), Expect = 4.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 108 KEEKREEDEENDNDNESDHDE 128
+E++ +E+EE++ D E D DE
Sbjct: 191 EEDEEDEEEEDEEDEEDDDDE 211
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 30.8 bits (68), Expect = 0.32
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 104 LKMLKEEKREEDEENDNDNESDHDEAD 130
+K K +K++E+EEN+ D E + +E D
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKD 338
Score = 30.4 bits (67), Expect = 0.41
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 98 ILASKYLKMLKEEKREEDEENDND--NESDHDEAD 130
+ A+K K +EE+ EEDEE++ + +E D DE D
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEED 346
Score = 28.1 bits (61), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 108 KEEKREEDEENDNDNESDHDEADS 131
++++ +EDEE+D D E D D+ S
Sbjct: 336 EKDEEDEDEEDDEDEEEDGDDEQS 359
Score = 26.6 bits (57), Expect = 6.0
Identities = 7/23 (30%), Positives = 19/23 (82%)
Query: 108 KEEKREEDEENDNDNESDHDEAD 130
+EE+++E++E++ D+E + ++ D
Sbjct: 333 EEEEKDEEDEDEEDDEDEEEDGD 355
Score = 26.2 bits (56), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 108 KEEKREEDEENDNDNESDH 126
++E+ +EDEE D D+E H
Sbjct: 342 EDEEDDEDEEEDGDDEQSH 360
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 98 ILASKYLKMLKEEKREEDEEN--------DNDNESDHDEAD 130
+ A+K K +EE+ EEDEE+ D D E D DE D
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEED 352
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 108 KEEKREEDE-ENDNDNESDHDEADS 131
+EEK EEDE E D+++E D D+ S
Sbjct: 334 EEEKDEEDEDEEDDEDEEDGDDEQS 358
>gi|48762709 SAM domain, SH3 domain and nuclear localization
signals, 1 [Homo sapiens]
Length = 373
Score = 30.8 bits (68), Expect = 0.32
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 96 KKILASKYLKMLKEEKREEDEEN 118
KK + KY+K L EEK EED EN
Sbjct: 78 KKKVGKKYIKALSEEKDEEDGEN 100
>gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens]
Length = 437
Score = 30.4 bits (67), Expect = 0.41
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 24 IRVIMKSSPEVSSIN-QEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQ 82
I ++ K++ E + N +EAL L A E F+ + Y S K K+ + A Q
Sbjct: 10 IDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAI---KYEAHSDKAKESIR----AKCVQ 62
Query: 83 QSETFQFLADILPKKILASKYLKMLKEEKREEDEENDNDNESDHDE 128
+ + L D L K K+ K +E + E + +D+D+E D+ E
Sbjct: 63 YLDRAEKLKDYLRSK---EKHGKKPVKENQSEGKGSDSDSEGDNPE 105
>gi|167466187 integrin-binding sialoprotein precursor [Homo sapiens]
Length = 317
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 94 LPKKI--LASKYLKMLKEEKREEDEENDNDNESDHDEAD 130
LPKK + +K K + ++ EE+EE N+NE E D
Sbjct: 132 LPKKAGDITNKATKEKESDEEEEEEEEGNENEESEAEVD 170
>gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]
Length = 2555
Score = 30.0 bits (66), Expect = 0.54
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKK 70
G ++ + +L + R+++I++ ++SS N + L + ++ Y++RH + +E++
Sbjct: 324 GQDETIKNLEIFRLKMILRLL-QISSFNGKMNALNE--INKVISSVSYYTHRHSNPEEEE 380
Query: 71 VLTYSDLANTAQQSETFQF-LADILPKKILASKYLKMLK---EEKREEDEENDN 120
LT +A QQ+ L D L + K K+L+ +EK ++ DN
Sbjct: 381 WLTAERMAEWIQQNNILSIVLQDSLHQPQYVEKLEKILRFVIKEKALTLQDLDN 434
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,553,862
Number of Sequences: 37866
Number of extensions: 172219
Number of successful extensions: 3602
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 1113
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.