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Search of human proteins with 8393009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
(782 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 1536 0.0
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 170 4e-42
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 140 6e-33
gi|156415988 zinc finger and BTB domain containing 7B [Homo sapi... 40 0.006
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 40 0.006
gi|239752949 PREDICTED: similar to kruppel-related zinc finger p... 40 0.006
gi|239752947 PREDICTED: similar to kruppel-related zinc finger p... 40 0.006
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi... 40 0.006
gi|73476377 LBXCOR1 homolog [Homo sapiens] 39 0.014
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 38 0.041
gi|186928841 component of oligomeric golgi complex 8 [Homo sapiens] 37 0.071
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 36 0.12
gi|122937233 discs, large (Drosophila) homolog-associated protei... 35 0.35
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 34 0.46
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 34 0.46
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 34 0.46
gi|38708313 aspartate beta-hydroxylase domain containing 1 [Homo... 34 0.46
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens] 34 0.60
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 34 0.60
gi|32484977 angiomotin like 2 [Homo sapiens] 34 0.60
gi|48762942 huntingtin interacting protein-1-related [Homo sapiens] 33 0.78
gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens] 33 0.78
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 33 1.0
gi|116256471 SNF1-like kinase [Homo sapiens] 33 1.0
gi|27886557 msh homeobox 2 [Homo sapiens] 33 1.3
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 1536 bits (3978), Expect = 0.0
Identities = 782/782 (100%), Positives = 782/782 (100%)
Query: 1 MAAAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDP 60
MAAAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDP
Sbjct: 1 MAAAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDP 60
Query: 61 TDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATD 120
TDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATD
Sbjct: 61 TDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATD 120
Query: 121 TIRKMKNDFRKMEDEMDRLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFL 180
TIRKMKNDFRKMEDEMDRLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFL
Sbjct: 121 TIRKMKNDFRKMEDEMDRLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFL 180
Query: 181 FELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQR 240
FELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQR
Sbjct: 181 FELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQR 240
Query: 241 FREGGSGAPEQAECVELLLALGEPAEELCEEFLAHARGRLEKELRNLEAELGPSPPAPDV 300
FREGGSGAPEQAECVELLLALGEPAEELCEEFLAHARGRLEKELRNLEAELGPSPPAPDV
Sbjct: 241 FREGGSGAPEQAECVELLLALGEPAEELCEEFLAHARGRLEKELRNLEAELGPSPPAPDV 300
Query: 301 LEFTDHGGSGFVGGLCQVAAAYQELFAAQGPAGAEKLAAFARQLGSRYFALVERRLAQEQ 360
LEFTDHGGSGFVGGLCQVAAAYQELFAAQGPAGAEKLAAFARQLGSRYFALVERRLAQEQ
Sbjct: 301 LEFTDHGGSGFVGGLCQVAAAYQELFAAQGPAGAEKLAAFARQLGSRYFALVERRLAQEQ 360
Query: 361 GGGDNSLLVRALDRFHRRLRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRAAFLG 420
GGGDNSLLVRALDRFHRRLRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRAAFLG
Sbjct: 361 GGGDNSLLVRALDRFHRRLRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRAAFLG 420
Query: 421 CLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSFSNKPYF 480
CLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSFSNKPYF
Sbjct: 421 CLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSFSNKPYF 480
Query: 481 RGEFCSQGVREGLIVGFVHSMCQTAQSFCDSPGEKGGATPPALLLLLSRLCLDYETATIS 540
RGEFCSQGVREGLIVGFVHSMCQTAQSFCDSPGEKGGATPPALLLLLSRLCLDYETATIS
Sbjct: 481 RGEFCSQGVREGLIVGFVHSMCQTAQSFCDSPGEKGGATPPALLLLLSRLCLDYETATIS 540
Query: 541 YILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKSVETRDW 600
YILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKSVETRDW
Sbjct: 541 YILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKSVETRDW 600
Query: 601 LSTLEPRNVRAVMKRVVEDTTAIDVQVGLLYEEGVRKAQSSDSSKRTFSVYSSSRQQGRY 660
LSTLEPRNVRAVMKRVVEDTTAIDVQVGLLYEEGVRKAQSSDSSKRTFSVYSSSRQQGRY
Sbjct: 601 LSTLEPRNVRAVMKRVVEDTTAIDVQVGLLYEEGVRKAQSSDSSKRTFSVYSSSRQQGRY 660
Query: 661 APSYTPSAPMDTNLLSNIQKLFSERIDVFSPVEFNKVSVLTGIIKISLKTLLECVRLRTF 720
APSYTPSAPMDTNLLSNIQKLFSERIDVFSPVEFNKVSVLTGIIKISLKTLLECVRLRTF
Sbjct: 661 APSYTPSAPMDTNLLSNIQKLFSERIDVFSPVEFNKVSVLTGIIKISLKTLLECVRLRTF 720
Query: 721 GRFGLQQVQVDCHFLQLYLWRFVADEELVHLLLDEVVASAALRCPDPVPMEPSVVEVICE 780
GRFGLQQVQVDCHFLQLYLWRFVADEELVHLLLDEVVASAALRCPDPVPMEPSVVEVICE
Sbjct: 721 GRFGLQQVQVDCHFLQLYLWRFVADEELVHLLLDEVVASAALRCPDPVPMEPSVVEVICE 780
Query: 781 RG 782
RG
Sbjct: 781 RG 782
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 170 bits (431), Expect = 4e-42
Identities = 84/99 (84%), Positives = 88/99 (88%)
Query: 28 ERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLM 87
ERRRKAH MLKLY GLSEGEA G PAGPDPLDPTDLNGAHFDPEVYLDKL RE PLAQLM
Sbjct: 6 ERRRKAHRMLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESPLAQLM 65
Query: 88 DSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMK 126
DSETDMV+QIRALDSDMQTLVYENY+KFI AT+ +K
Sbjct: 66 DSETDMVQQIRALDSDMQTLVYENYDKFIPATEMTNSIK 104
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 140 bits (352), Expect = 6e-33
Identities = 71/83 (85%), Positives = 74/83 (89%)
Query: 36 MLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVR 95
MLKLY GLSEGEA AG DPLDPTDLNGAHF+PEVYLDKL RECPLAQLMDSETDMV+
Sbjct: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
Query: 96 QIRALDSDMQTLVYENYNKFISA 118
QIRALDSDMQTLVYENY+K SA
Sbjct: 61 QIRALDSDMQTLVYENYDKPPSA 83
>gi|156415988 zinc finger and BTB domain containing 7B [Homo
sapiens]
Length = 539
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 4 AAAAGPSPGSGPGDS----------PEGPEGEAPERRRKAHGMLKL--YYGLSEGEAAGR 51
A G S GSGPGDS PEGP+ P + L YGL++G G
Sbjct: 239 AGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPAYGLAQG--GGP 296
Query: 52 PAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRA 99
P P+ L +D + D YL L ++ LA +DS+ +VR+ R+
Sbjct: 297 PLSPEELG-SDEDAIDPDLMAYLSSLHQD-NLAPGLDSQDKLVRKRRS 342
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 4 AAAAGPSPGSGPGDS----------PEGPEGEAPERRRKAHGMLKL--YYGLSEGEAAGR 51
A G S GSGPGDS PEGP+ P + L YGL++G G
Sbjct: 273 AGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPAYGLAQG--GGP 330
Query: 52 PAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRA 99
P P+ L +D + D YL L ++ LA +DS+ +VR+ R+
Sbjct: 331 PLSPEELG-SDEDAIDPDLMAYLSSLHQD-NLAPGLDSQDKLVRKRRS 376
>gi|239752949 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 1 [Homo sapiens]
Length = 539
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 4 AAAAGPSPGSGPGDS----------PEGPEGEAPERRRKAHGMLKL--YYGLSEGEAAGR 51
A G S GSGPGDS PEGP+ P + L YGL++G G
Sbjct: 239 AGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPAYGLAQG--GGP 296
Query: 52 PAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRA 99
P P+ L +D + D YL L ++ LA +DS+ +VR+ R+
Sbjct: 297 PLSPEELG-SDEDAIDPDLMAYLSSLHQD-NLAPGLDSQDKLVRKRRS 342
>gi|239752947 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 2 [Homo sapiens]
Length = 539
Score = 40.4 bits (93), Expect = 0.006
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 4 AAAAGPSPGSGPGDS----------PEGPEGEAPERRRKAHGMLKL--YYGLSEGEAAGR 51
A G S GSGPGDS PEGP+ P + L YGL++G G
Sbjct: 239 AGRVGSSGGSGPGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPAYGLAQG--GGP 296
Query: 52 PAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRA 99
P P+ L +D + D YL L ++ LA +DS+ +VR+ R+
Sbjct: 297 PLSPEELG-SDEDAIDPDLMAYLSSLHQD-NLAPGLDSQDKLVRKRRS 342
>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
sapiens]
Length = 1002
Score = 40.4 bits (93), Expect = 0.006
Identities = 66/305 (21%), Positives = 125/305 (40%), Gaps = 49/305 (16%)
Query: 9 PSPGSGPGDSPEGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHF 68
P P +GP + + + EA R++ G+ G + + D L+ +
Sbjct: 452 PEPPAGPSEVEQQLQAEAEHLRKELEGLA----GQLQAQVQ---------DNEGLSRLNR 498
Query: 69 DPEVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKND 128
+ E L +L R A+L + + RQI + +T TI + +
Sbjct: 499 EQEERLLELERA---AELWGEQAEARRQILETMQNDRT--------------TISRALSQ 541
Query: 129 FRKMEDEMDRLATNMAVITDFSARISATLQD----RHERITKLAGVHALLRKLQFLFELP 184
R++++++ L + +T+ + I++ LQ + E KL + L +L+ EL
Sbjct: 542 NRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELK 601
Query: 185 SRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQRFREG 244
S+ + ++ Q +Y G Q + YQ L S + + + ++ +L QL+Q+ +G
Sbjct: 602 SQEAQSLQQ----QRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQG 657
Query: 245 GSGA----PEQAECVELLLALGEPAEELCEE--FLAH-----ARGRLEKELRNLEAELGP 293
+ A E E E L A + ++L + +AH R E+E E E
Sbjct: 658 KAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAV 717
Query: 294 SPPAP 298
+ P P
Sbjct: 718 AVPQP 722
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 39.3 bits (90), Expect = 0.014
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 216 LPSFRAIQDDCQVITARLAQQLRQRFREGGSGAPEQAECVELLLALGEPAEELCEEFLAH 275
+PS+ A Q + + A +A GSGAPE + E G AEE C L
Sbjct: 456 VPSYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSAL-- 513
Query: 276 ARGRLEKELRN--LEAELGPSPPAP 298
+RG L+++ + L L P PP P
Sbjct: 514 SRGPLDEDGTDEALPPPLAPLPPPP 538
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 37.7 bits (86), Expect = 0.041
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 312 VGGLCQVAAAYQELFA------------AQGPAGAEKLAAFARQLGSRYFALVERRL-AQ 358
+G LCQ A+ + + A+G GA L AR++ + Y + R L +
Sbjct: 20 LGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGR 79
Query: 359 EQGGGDNSLLVRALDRFHRR--LRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRA 416
GG D SL R HRR LRA GA L + ++ +A E L L G RA
Sbjct: 80 PAGGPDPSLQPR-----HRRRVLRAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRA 134
Query: 417 AFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSI 453
+V A+ P + +E L E +A A ++
Sbjct: 135 PGAEAAVEVLAAV-GPCLRPREDGPLLERVAGTAVAL 170
>gi|186928841 component of oligomeric golgi complex 8 [Homo sapiens]
Length = 612
Score = 37.0 bits (84), Expect = 0.071
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 39/182 (21%)
Query: 74 LDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKME 133
L++LRRE +L + +++Q R L + NY FI + ++ F +E
Sbjct: 58 LERLRREPE--RLAEERAQLLQQTR-------DLAFANYKTFIRGAECTERIHRLFGDVE 108
Query: 134 DEMDRLATNM-------------AVITDFSARISATLQDRHERITKLAGVHALLRKLQFL 180
+ RL + A + R+++ +RH I ++
Sbjct: 109 ASLGRLLDRLPSFQQSCRNFVKEAEEISSNRRMNSLTLNRHTEILEI------------- 155
Query: 181 FELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSFRAI----QDDCQVITARLAQQ 236
E+P + CV Y +A+ + + ++Y +P + I + Q++ ++L QQ
Sbjct: 156 LEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQ 215
Query: 237 LR 238
LR
Sbjct: 216 LR 217
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 36.2 bits (82), Expect = 0.12
Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 9/202 (4%)
Query: 92 DMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVITDFSA 151
D+ Q+ + Q L E ++A I+KM+ + +ED+ + ++ D A
Sbjct: 954 DLEEQLDEEEGARQKLQLEK----VTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDRIA 1009
Query: 152 RISATLQDRHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRAQAVLQ 211
S+ L + E+ LA + ++ + +L RL K + + + + +
Sbjct: 1010 ECSSQLAEEEEKAKNLAKIRN--KQEVMISDLEERLKKEEKTRQELEKAKRKLDGETTDL 1067
Query: 212 QYQHLPSFRAIQDDCQVITARLAQQLRQRFREGGSGAPEQAECVELLLALGEPAEELCEE 271
Q Q + +A D+ ++ A+ ++L+ G + ++++ L EL E+
Sbjct: 1068 QDQ-IAELQAQIDELKLQLAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQED 1126
Query: 272 FLAH--ARGRLEKELRNLEAEL 291
F + +R + EK+ R+L EL
Sbjct: 1127 FESEKASRNKAEKQKRDLSEEL 1148
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 34.7 bits (78), Expect = 0.35
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 AAAGPSPGSGPGDSPEGPEGEAPER-RRKAHGMLKLYYGLSEGEAAGR 51
A AGP P G G +PE P E+P R R H + KL+ EA G+
Sbjct: 146 AGAGPGPAPGTGTAPE-PRSESPSRIRHLVHSVQKLFAKSHSLEAPGK 192
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 3 AAAAAGPSPGSGPGDSPEGPEGEAPERRRKAHGM 36
+ +A GP PG GPG P GP G AP + HGM
Sbjct: 224 SVSATGPGPGPGPGPGP-GP-GPAPPNYSRPHGM 255
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 34.3 bits (77), Expect = 0.46
Identities = 108/422 (25%), Positives = 161/422 (38%), Gaps = 93/422 (22%)
Query: 71 EVYLDKLRRECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISA------TDTIRK 124
E L +LR + A M + D R+++ L S + L E N S + +R+
Sbjct: 567 EEQLQRLRDKTDGA--MQAHEDAQREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQ 624
Query: 125 MKNDFRKMEDEM----DRLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFL 180
+ + ++E+ DRL AR+ L+ H ++ +L G ++L K L
Sbjct: 625 EREKLQAAQEELRRQRDRLEEEQEDAVQDGARVRRELERSHRQLEQLEGKRSVLAK--EL 682
Query: 181 FELPSRLTKCVELGAYGQAVRYQ----------GRAQAVLQQYQHLPSFRAIQDDCQVIT 230
E+ L++ QA + + GR + L + ++QD ++
Sbjct: 683 VEVREALSRATLQRDMLQAEKAEVAEALTKAEAGRVELELSMTKLRAEEASLQDSLSKLS 742
Query: 231 A-------------RLAQQLRQRFREGGSGAPEQAECVELLLALGEPAEELCEEFLAHAR 277
A RL QL + + G QAE E +A E +E EE
Sbjct: 743 ALNESLAQDKLDLNRLVAQLEEE-KSALQGRQRQAE-QEATVAREE--QERLEEL----- 793
Query: 278 GRLEKEL--RNLEAELGPSPPAPDVLEFTDHGGSGFVGGLCQVAAAYQELFAAQGPAGAE 335
RLE+E+ + LE L + A + LE Q+ E Q E
Sbjct: 794 -RLEQEVARQGLEGSLRVAEQAQEALE-------------QQLPTLRHERSQLQ-----E 834
Query: 336 KLAAFARQLGSRYFALVE-RRLAQEQGGGDNSLLVRALDRFHRRLRAPGALLAAAGLADA 394
+LA +RQL R L + RR AQ Q V AL+R R A AGLA
Sbjct: 835 QLAQLSRQLSGREQELEQARREAQRQ--------VEALERAAREKEA--LAKEHAGLA-- 882
Query: 395 ATEIVERVARERLGH-------HLQGLRAAFLGCLTDVRQALA--APRVAGKEGPGLAEL 445
V+ VA ER G L+ + A G L +V++ LA R E G A L
Sbjct: 883 ----VQLVAAEREGRTLSEEATRLRLEKEALEGSLFEVQRQLAQLEARREQLEAEGQALL 938
Query: 446 LA 447
LA
Sbjct: 939 LA 940
>gi|38708313 aspartate beta-hydroxylase domain containing 1 [Homo
sapiens]
Length = 390
Score = 34.3 bits (77), Expect = 0.46
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 MAAAAAAGPSPGSGPGDSPEGPEGEA-PERRRKAHGMLKLYYGLSEGEAAGRPAGPDP 57
+ + A GPSPG GPGD EGP E RR +A+ + G+ A + GP P
Sbjct: 120 VGCSEAGGPSPG-GPGDPGEGPRTEGLVSRRLRAYARRYSWAGMGRVRRAAQ-GGPGP 175
>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
Length = 1044
Score = 33.9 bits (76), Expect = 0.60
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 123 RKMKNDFRKMEDE-----MDRLATNMAVITDFSARISAT----LQDRHERITKLAGVHAL 173
++++ + RK D+ + RL +MA+ + S + + + L+D++E +L+ +
Sbjct: 847 QELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE--AELSELEQS 904
Query: 174 LRKLQFLFELPSRLTKCVEL-GAYGQAVRYQGRAQAVLQQYQH-LPSFRAIQDDCQVITA 231
RKLQ +C EL G G+A R Q +++Q + L +A+ + +
Sbjct: 905 ERKLQ---------ERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERS 955
Query: 232 RLAQQLRQRFREGGSGAPEQAECVELLLALGEPAEEL 268
LAQ +RQ F + + + E+ + LA + ++L
Sbjct: 956 NLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQL 992
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 33.9 bits (76), Expect = 0.60
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 123 RKMKNDFRKMEDE-----MDRLATNMAVITDFSARISAT----LQDRHERITKLAGVHAL 173
++++ + RK D+ + RL +MA+ + S + + + L+D++E +L+ +
Sbjct: 883 QELREEIRKGRDKEIELVIHRLEADMALAKEESEKAAESRIKRLRDKYE--AELSELEQS 940
Query: 174 LRKLQFLFELPSRLTKCVEL-GAYGQAVRYQGRAQAVLQQYQH-LPSFRAIQDDCQVITA 231
RKLQ +C EL G G+A R Q +++Q + L +A+ + +
Sbjct: 941 ERKLQ---------ERCSELKGQLGEAEGENLRLQGLVRQKERALEDAQAVNEQLSSERS 991
Query: 232 RLAQQLRQRFREGGSGAPEQAECVELLLALGEPAEEL 268
LAQ +RQ F + + + E+ + LA + ++L
Sbjct: 992 NLAQVIRQEFEDRLAASEEETRQAKAELATLQARQQL 1028
>gi|32484977 angiomotin like 2 [Homo sapiens]
Length = 780
Score = 33.9 bits (76), Expect = 0.60
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 75 DKLRRECPLAQLMDSETDMVRQIRALDSDMQTL--VYENYNKFISATDTIRK-MKNDFRK 131
++L+RE ++S + +I L+S++Q L +E+ + S + + K M+N K
Sbjct: 329 ERLQRE------LESSAEKAGRIEKLESEIQRLSEAHESLTRASSKREALEKTMRN---K 379
Query: 132 MEDEMDRLATNMAVITDFSARISATLQDRHERITKL-----AGVHALLRKLQFL-FELPS 185
M+ EM RL DF+ + L+ + R+ AG ++ KL +E
Sbjct: 380 MDSEMRRLQ-------DFNRDLRERLESANRRLASKTQEAQAGSQDMVAKLLAQSYEQQQ 432
Query: 186 RLTKCV-ELGAYGQAVRYQGRAQAVLQQYQHLPSFRAIQDDCQVITARLAQQLRQRFREG 244
K E+ A+ Q R +L+Q RA AR ++LR++
Sbjct: 433 EQEKLEREMALLRGAIEDQRRRAELLEQALGNAQGRA---------ARAEEELRKK---- 479
Query: 245 GSGAPEQAECVELLLALGEPAEELCEEFLAHARGRLEKELRNLEAE 290
E+ E ++ L + A E E+ R RLE+EL+ L A+
Sbjct: 480 -QAYVEKVERLQQALGQLQAACEKREQLELRLRTRLEQELKALRAQ 524
>gi|48762942 huntingtin interacting protein-1-related [Homo sapiens]
Length = 1068
Score = 33.5 bits (75), Expect = 0.78
Identities = 97/395 (24%), Positives = 146/395 (36%), Gaps = 76/395 (19%)
Query: 20 EGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRR 79
E PE E PE ++++ + G PAG +P+ DL F P
Sbjct: 308 EAPEDEEPEN------LIEI--------STGPPAG-EPVVVADLFDQTFGP--------- 343
Query: 80 ECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMD-- 137
P + D D QI +L +++ L E + A I ++K+ +E E++
Sbjct: 344 --PNGSVKD---DRDLQIESLKREVEMLRSELEKIKLEAQRYIAQLKSQVNALEGELEEQ 398
Query: 138 RLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYG 197
R A++ + Q RHE A LR Q E L + E A
Sbjct: 399 RKQKQKALVDNE--------QLRHEL--------AQLRAAQLEGERSQGLREEAERKASA 442
Query: 198 QAVRYQGRAQAVLQQ-YQHLPSFRAIQDDCQVITARLAQQLRQRFREGGSGAPEQAECVE 256
RY + + + H R D + +T + QQ ++ E A E
Sbjct: 443 TEARYNKLKEKHSELVHVHAELLRKNADTAKQLT--VTQQSQE----------EVARVKE 490
Query: 257 LLLALGEPAEELCEEFLAHARGRLEKELRNLEAELGPSPPAPDVLEFTDHGGSGFVGGLC 316
L E + E L +LEK R LEA+ G A + L T+ S L
Sbjct: 491 QLAFQVEQVKRESELKLEEKSDQLEKLKRELEAKAGELARAQEALSHTEQSKSELSSRLD 550
Query: 317 QVAAAYQELFAAQGPAGAEKLAA--FARQLGSRYFALVERRLAQEQG----------GGD 364
++A L A A+ LAA R+ + + ++R +QEQG +
Sbjct: 551 TLSAEKDALSGAVRQREADLLAAQSLVRETEAA-LSREQQRSSQEQGELQGRLAERESQE 609
Query: 365 NSLLVRALDRFHRRLRAPGALLAAAG-LADAATEI 398
L R LD LR GA AAG L DA +++
Sbjct: 610 QGLRQRLLDEQFAVLR--GAAAEAAGILQDAVSKL 642
>gi|239750456 PREDICTED: similar to KIAA0655 protein [Homo sapiens]
Length = 1048
Score = 33.5 bits (75), Expect = 0.78
Identities = 97/395 (24%), Positives = 146/395 (36%), Gaps = 76/395 (19%)
Query: 20 EGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRR 79
E PE E PE ++++ + G PAG +P+ DL F P
Sbjct: 288 EAPEDEEPEN------LIEI--------STGPPAG-EPVVVADLFDQTFGP--------- 323
Query: 80 ECPLAQLMDSETDMVRQIRALDSDMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMD-- 137
P + D D QI +L +++ L E + A I ++K+ +E E++
Sbjct: 324 --PNGSVKD---DRDLQIESLKREVEMLRSELEKIKLEAQRYIAQLKSQVNALEGELEEQ 378
Query: 138 RLATNMAVITDFSARISATLQDRHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYG 197
R A++ + Q RHE A LR Q E L + E A
Sbjct: 379 RKQKQKALVDNE--------QLRHEL--------AQLRAAQLEGERSQGLREEAERKASA 422
Query: 198 QAVRYQGRAQAVLQQ-YQHLPSFRAIQDDCQVITARLAQQLRQRFREGGSGAPEQAECVE 256
RY + + + H R D + +T + QQ ++ E A E
Sbjct: 423 TEARYNKLKEKHSELVHVHAELLRKNADTAKQLT--VTQQSQE----------EVARVKE 470
Query: 257 LLLALGEPAEELCEEFLAHARGRLEKELRNLEAELGPSPPAPDVLEFTDHGGSGFVGGLC 316
L E + E L +LEK R LEA+ G A + L T+ S L
Sbjct: 471 QLAFQVEQVKRESELKLEEKSDQLEKLKRELEAKAGELARAQEALSHTEQSKSELSSRLD 530
Query: 317 QVAAAYQELFAAQGPAGAEKLAA--FARQLGSRYFALVERRLAQEQG----------GGD 364
++A L A A+ LAA R+ + + ++R +QEQG +
Sbjct: 531 TLSAEKDALSGAVRQREADLLAAQSLVRETEAA-LSREQQRSSQEQGELQGRLAERESQE 589
Query: 365 NSLLVRALDRFHRRLRAPGALLAAAG-LADAATEI 398
L R LD LR GA AAG L DA +++
Sbjct: 590 QGLRQRLLDEQFAVLR--GAAAEAAGILQDAVSKL 622
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.1 bits (74), Expect = 1.0
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1 MAAAAAAG--PSPGSGPGDSPEGPEGE--APERRRKAHGMLKLYYGLSEGEAAGRPAGPD 56
MAAAA G P PGS G P P G R + +G ++ L G A P G +
Sbjct: 1 MAAAAGGGSCPGPGSARGRFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAE 60
Query: 57 PLDPTDL 63
P + T L
Sbjct: 61 PGEDTAL 67
>gi|116256471 SNF1-like kinase [Homo sapiens]
Length = 783
Score = 33.1 bits (74), Expect = 1.0
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 310 GFVGGLCQVAAAYQELFAAQGPAGAEKLAAFARQLGSR-----YFALVE-RRLAQEQGGG 363
G +GG + ++QE A + + L AF +QL + L + + LA++
Sbjct: 556 GGLGGAVLLPVSFQEGRRASDTSLTQGLKAFRQQLRKTTRTKGFLGLNKIKGLARQVCQA 615
Query: 364 DNSLLVRA-LDRFHRRLRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRAAFLGCL 422
S R L FH ++PG AAG + + + E + ++RL LQ AA GC
Sbjct: 616 PASRASRGGLSPFHAPAQSPGLHGGAAGSREGWSLLEEVLEQQRL-LQLQHHPAAAPGCS 674
Query: 423 TDVRQALAAPRVAGKEGPGLAELLANVASS 452
+ A A +A +GPG A L + + +S
Sbjct: 675 QAPQPAPAPFVIAPCDGPGAAPLPSTLLTS 704
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 32.7 bits (73), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 8 GPSPGSGPGDSPEGPEGEAPERRRKAHGMLKLYYGLSEGEAAGRPAGPDPLD 59
GP+ +GPG P G EG A ERR K + L + + A P P +
Sbjct: 17 GPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAE 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,624,733
Number of Sequences: 37866
Number of extensions: 1376391
Number of successful extensions: 6208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 6060
Number of HSP's gapped (non-prelim): 208
length of query: 782
length of database: 18,247,518
effective HSP length: 110
effective length of query: 672
effective length of database: 14,082,258
effective search space: 9463277376
effective search space used: 9463277376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.