Search of human proteins with 8392830

Search of human proteins with 8392830

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]
         (353 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]             744   0.0  
gi|7705859 alpha-1,4-N-acetylglucosaminyltransferase [Homo sapiens]   207   1e-53
gi|47716512 mex-3 homolog B [Homo sapiens]                             33   0.39 
gi|210032580 SET domain containing 1B [Homo sapiens]                   31   1.5  
gi|14043024 BCL2-associated athanogene 3 [Homo sapiens]                31   1.9  
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora...    31   1.9  
gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]     30   2.5  
gi|94421471 ring finger protein 17 [Homo sapiens]                      30   2.5  
gi|7657361 contactin 6 [Homo sapiens]                                  30   3.3  
gi|47132519 Ras association and pleckstrin homology domains 1 is...    30   4.3  
gi|167234405 hypothetical protein LOC284325 [Homo sapiens]             29   5.6  
gi|46358066 hypothetical protein LOC388325 [Homo sapiens]              29   7.3  
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               29   7.3  
gi|24430212 interleukin 23 receptor precursor [Homo sapiens]           28   9.5  
gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]    28   9.5  
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    28   9.5  
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]    28   9.5  
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   28   9.5  
gi|62122851 small proline-rich protein 2G [Homo sapiens]               28   9.5  
gi|187607445 hypothetical protein LOC79137 [Homo sapiens]              28   9.5  
gi|126723547 hypothetical protein LOC57523 [Homo sapiens]              28   9.5  

>gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]
          Length = 353

 Score =  744 bits (1920), Expect = 0.0
 Identities = 353/353 (100%), Positives = 353/353 (100%)

Query: 1   MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP 60
           MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP
Sbjct: 1   MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP 60

Query: 61  CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG 120
           CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG
Sbjct: 61  CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG 120

Query: 121 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI 180
           NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI
Sbjct: 121 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI 180

Query: 181 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH 240
           ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH
Sbjct: 181 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH 240

Query: 241 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN 300
           YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN
Sbjct: 241 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN 300

Query: 301 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL 353
           PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL
Sbjct: 301 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL 353


>gi|7705859 alpha-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
          Length = 340

 Score =  207 bits (527), Expect = 1e-53
 Identities = 110/275 (40%), Positives = 157/275 (57%), Gaps = 13/275 (4%)

Query: 79  IFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNA--SLPRHLGISLLSCF 136
           I FLETS+R  P  L  CSVESAA+ +PE  V+  MKGL       S   +   S LS  
Sbjct: 52  IVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAI 111

Query: 137 PNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFI 196
            NV + PLD++ L  DTPL  WY  +    E   L + SDASR+A++WK+GGIY+DTD I
Sbjct: 112 DNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVI 171

Query: 197 VLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTR 256
            ++ +     +    SRY  NG F  F   H F+  CM +FV+HYN  IWG+QGP+L+TR
Sbjct: 172 SIRPIPEENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTR 230

Query: 257 VFKKWCSIRSLAE--SRACRGVTTLPPEAFYPIPWQDWKKYFE--DINPEELPRLLSATY 312
           + + WC +    E     C  ++ L P+ FYPI +++W++Y+E  D  P       + +Y
Sbjct: 231 MLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPS-----FNVSY 285

Query: 313 AVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTH 346
           A+H+WN  +Q G      S  L+  L+ ++CP T+
Sbjct: 286 ALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTY 320


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 54  NLPAEIPCPTLTPPTPPSHGPTPGNIFF---LETSDRTNPNFLFMCSVESAARTHPESHV 110
           ++P+   CP L P   P+  P PG        E S    P      S  S+A +   S  
Sbjct: 349 SVPSPDGCPELQPTFDPAPAPPPGAPLIWAQFERSPGGGPAAPVSSSCSSSASSSASSSS 408

Query: 111 LVLMKGLPGGNASLPRHLGISLL 133
           +V     PGG AS P +  + LL
Sbjct: 409 VV----FPGGGASAPSNANLGLL 427


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 48   EKGQLYNLPAEIPCPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHP 106
            E   +  LP + P P   PP PPS  P P      ET+D ++P+       E  A  HP
Sbjct: 1269 EPPMMLPLPLQPPLPPPRPPRPPSPPPEP------ETTDASHPS----VPPEPLAEDHP 1317


>gi|14043024 BCL2-associated athanogene 3 [Homo sapiens]
          Length = 575

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 24/87 (27%)

Query: 46  PKEKGQLYNLPAEIPCPTLTPPTPPSHGPT--PGNIFFLETSDRTNPNFLFMCSVESAAR 103
           P EK ++   PA +PCP      PPS GP+  P +   + T +R  P      S   A  
Sbjct: 358 PSEKVEVKVPPAPVPCP------PPSPGPSAVPSSPKSVATEERAAP------STAPAEA 405

Query: 104 THPESHVLVLMKGLPGGNASLPRHLGI 130
           T P+          PG   + P+H G+
Sbjct: 406 TPPK----------PGEAEAPPKHPGV 422


>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 6 [Homo sapiens]
          Length = 1093

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 47  KEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG 77
           KE+ Q+ N+   +P P L    P ++GP PG
Sbjct: 747 KERLQILNVQLSVPFPALPAALPAANGPVPG 777


>gi|188497667 trafficking protein, kinesin binding 2 [Homo sapiens]
          Length = 914

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 42  VVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFL 93
           V   P  +  L  LP  +  P+ TPP  PSH P P  + F E     + NFL
Sbjct: 754 VYHSPISENPLQPLPKSLAIPS-TPPNSPSHSPCPSPLPF-EPRVHLSENFL 803


>gi|94421471 ring finger protein 17 [Homo sapiens]
          Length = 1623

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 55   LPAEIPCPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMC--SVESAARTHPES 108
            L AE   P L PP   S  P+PG ++ ++     +PN +++C  S+E++ +++  S
Sbjct: 1390 LSAETDTPLL-PPYLSSSLPSPGELYAVQVKHVVSPNEVYICLDSIETSNQSNQHS 1444


>gi|7657361 contactin 6 [Homo sapiens]
          Length = 1028

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 286 PIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKSQG 323
           P PW  W K  E +NPEE  ++ + T  + + N    G
Sbjct: 345 PNPWYTWLKNGERLNPEERIQIENGTLIITMLNVSDSG 382


>gi|47132519 Ras association and pleckstrin homology domains 1
           isoform 1 [Homo sapiens]
          Length = 1250

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 46  PKEKGQLYNLPAEIPCPTLTPPTPPSHGPTP 76
           P E   ++  P   P P   PP PP+  PTP
Sbjct: 920 PPESSLVFPPPPPSPVPAPPPPPPPTASPTP 950


>gi|167234405 hypothetical protein LOC284325 [Homo sapiens]
          Length = 351

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 59 IPCPTLTPPTPPSHGPTPGNIFFLETS 85
          +P P   PP P + GP P ++F LE S
Sbjct: 52 VPPPLPLPPPPAATGPAPRHVFGLEKS 78


>gi|46358066 hypothetical protein LOC388325 [Homo sapiens]
          Length = 145

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 259 KKWCSIRSLA-----ESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPEELPRLLSATYA 313
           KKW   + L      E +    V    P    P+P ++W    ED +P+E P    ATY+
Sbjct: 50  KKWEIAKPLKHKQVDEEKMYENVLNESPVQLPPLPPRNWPS-LEDSSPQEAPSQPPATYS 108

Query: 314 V--HVWNKKS 321
           +   V NKK+
Sbjct: 109 LVNKVKNKKT 118


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 39  YWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTP 76
           Y   V +   +   Y     IPC TL P   P H P P
Sbjct: 234 YCRYVKQQCRQADKYQPETSIPCTTLIPTKIPEHSPPP 271


>gi|24430212 interleukin 23 receptor precursor [Homo sapiens]
          Length = 629

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 289 WQDWKKYFEDINPEELPRLLSATYAVHVWN 318
           WQ W   F    PE +P++ S  +    WN
Sbjct: 304 WQPWSSLFFHKTPETVPQVTSKAFQHDTWN 333


>gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]
          Length = 417

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 60  PCPTLTPPTPPSHGPTP 76
           P PT  PP PPS  P+P
Sbjct: 196 PSPTTAPPAPPSPSPSP 212


>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           1 isoform c [Homo sapiens]
          Length = 1450

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 45  EPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPGNIF 80
           +P+ +  L  LP   P P   PP PP   P P  +F
Sbjct: 188 QPQSEEPLSTLPQGPPQPPSPPPCPPEIPPKPVRLF 223


>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
          Length = 1460

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 18/103 (17%)

Query: 56   PAEIPCPTLTP-PTP-PSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVL 113
            P   P PT TP PTP P+  PT   I   ++  R +P     CS    A+T P    L  
Sbjct: 944  PIHTPTPTPTPTPTPTPTPTPTSEMIAGSQSLSRESP-----CS--RLAQTTPVDSALGS 996

Query: 114  MKGLPGGNASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLA 156
             +  P         +G    +C  +V   P++ R  F  TP++
Sbjct: 997  SRHTP---------IGTPHSNCSSSVPPSPVECRNPFAFTPIS 1030


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 44  GEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG 77
           G P   G L     ++ CP++ PP PP     PG
Sbjct: 157 GPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPG 190


>gi|62122851 small proline-rich protein 2G [Homo sapiens]
          Length = 73

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 56 PAEIPCPTLTPPTPPSHGPTP 76
          P + P P L PP PP H P P
Sbjct: 29 PPKCPEPYLPPPCPPEHCPPP 49


>gi|187607445 hypothetical protein LOC79137 [Homo sapiens]
          Length = 543

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 48  EKGQLYNLPAEIPCPTLTPPTPPSHGPTPGNIFFLETSDR 87
           ++G+L  L AE+     TPP PP   P   +I  L  SD+
Sbjct: 496 DQGELEQLNAELGLEPETPPKPPDAPPLGPDIHSLVQSDQ 535


>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
          Length = 1898

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 50   GQLYNLPAEIPCPTLTPPTPPSHGPTPGNIFFLETSDRT 88
            GQ ++LP ++P PT+   +P + G  P N+  L+ SD T
Sbjct: 1453 GQWWSLPKDVPAPTV---SPHAMGKRP-NLLALQLSDST 1487


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,665,811
Number of Sequences: 37866
Number of extensions: 776769
Number of successful extensions: 4191
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4136
Number of HSP's gapped (non-prelim): 50
length of query: 353
length of database: 18,247,518
effective HSP length: 103
effective length of query: 250
effective length of database: 14,347,320
effective search space: 3586830000
effective search space used: 3586830000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.