Search of human proteins with 82734217

Search of human proteins with 82734217

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|82734217 beta-defensin 112 [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|82734217 beta-defensin 112 [Homo sapiens]                          249   3e-67
gi|82734214 beta-defensin 111 [Homo sapiens]                           51   2e-07
gi|83582794 beta-defensin 110 [Homo sapiens]                           38   0.002
gi|82734219 beta-defensin 114 [Homo sapiens]                           34   0.022
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]              31   0.24 
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]              31   0.24 
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]               31   0.24 
gi|22748611 defensin, beta 106A precursor [Homo sapiens]               29   0.92 
gi|103485143 defensin, beta 106B precursor [Homo sapiens]              29   0.92 
gi|74136023 delta-like 1 homolog [Homo sapiens]                        28   1.6  
gi|103485139 defensin, beta 104A precursor [Homo sapiens]              28   1.6  
gi|17402931 sperm associated antigen 11B isoform C preproprotein...    28   1.6  
gi|103485137 defensin, beta 104B precursor [Homo sapiens]              28   1.6  
gi|83582800 beta-defensin 116 [Homo sapiens]                           27   3.5  
gi|239755157 PREDICTED: similar to astrotactin 2 [Homo sapiens]        27   4.6  
gi|83582796 beta-defensin 113 [Homo sapiens]                           27   4.6  
gi|4507565 tumor necrosis factor receptor superfamily, member 11...    26   6.0  
gi|58865339 defensin, beta 121 [Homo sapiens]                          26   7.8  

>gi|82734217 beta-defensin 112 [Homo sapiens]
          Length = 113

 Score =  249 bits (636), Expect = 3e-67
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MKLLTTICRLKLEKMYSKTNTSSTIFEKARHGTEKISTARSEGHHITFSRWKSCTAIGGR 60
           MKLLTTICRLKLEKMYSKTNTSSTIFEKARHGTEKISTARSEGHHITFSRWKSCTAIGGR
Sbjct: 1   MKLLTTICRLKLEKMYSKTNTSSTIFEKARHGTEKISTARSEGHHITFSRWKSCTAIGGR 60

Query: 61  CKNQCDDSEFRISYCARPTTHCCVTECDPTDPNNWIPKDSVGTQEWYPKDSRH 113
           CKNQCDDSEFRISYCARPTTHCCVTECDPTDPNNWIPKDSVGTQEWYPKDSRH
Sbjct: 61  CKNQCDDSEFRISYCARPTTHCCVTECDPTDPNNWIPKDSVGTQEWYPKDSRH 113


>gi|82734214 beta-defensin 111 [Homo sapiens]
          Length = 67

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 52 KSCTAIGGRCKNQCDDSEFRISYCARPTTHCCVTE 86
          + C    G+CKNQC ++E RI+YC RP THCC+ +
Sbjct: 33 RECRIGNGQCKNQCHENEIRIAYCIRPGTHCCLQQ 67


>gi|83582794 beta-defensin 110 [Homo sapiens]
          Length = 62

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 50 RWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCCV 84
          R++ C  + G CK  CDD E+   YC +  + CCV
Sbjct: 28 RFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62


>gi|82734219 beta-defensin 114 [Homo sapiens]
          Length = 69

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 54 CTAIGGRCKNQCDDSEFRISYCARPTTHCC 83
          CT   GRCK  C +SE +I  C+ P   CC
Sbjct: 29 CTKRYGRCKRDCLESEKQIDICSLPRKICC 58


>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 53 SCTAIGGRCKNQCDDSEFRISYCARPTTHC 82
          SC  + G+C+++C D E  I +C +   +C
Sbjct: 30 SCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 53 SCTAIGGRCKNQCDDSEFRISYCARPTTHC 82
          SC  + G+C+++C D E  I +C +   +C
Sbjct: 30 SCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
          Length = 61

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 53 SCTAIGGRCKNQCDDSEFRISYCARPTTHC 82
          SC  + G+C+++C D E  I +C +   +C
Sbjct: 30 SCFIMRGKCRHECHDFEKPIGFCTKLNANC 59


>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
          Length = 65

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 52 KSCTAIGGRCKNQCDDSEFRISYCARPTTHCCVT 85
          + C  + G CKN C  +E  I+ C + +  CC T
Sbjct: 24 EKCNKLKGTCKNNCGKNEELIALCQK-SLKCCRT 56


>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
          Length = 65

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 52 KSCTAIGGRCKNQCDDSEFRISYCARPTTHCCVT 85
          + C  + G CKN C  +E  I+ C + +  CC T
Sbjct: 24 EKCNKLKGTCKNNCGKNEELIALCQK-SLKCCRT 56


>gi|74136023 delta-like 1 homolog [Homo sapiens]
          Length = 383

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 54  CTAIGGRCKNQCDDSEFRISYCARPTTHCCVTEC 87
           CT IGG  + +C  + F    C+RP T+C  + C
Sbjct: 185 CTDIGGDFRCRCP-AGFIDKTCSRPVTNCASSPC 217


>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
          Length = 72

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 60 RCKNQCDDSEFRISYCARPTTH-CCVTECDPTDPNNWIP 97
          RC+ +C   E+RI  C  P T+ CC+ + D +  N   P
Sbjct: 36 RCRKKCRSQEYRIGRC--PNTYACCLRKWDESLLNRTKP 72


>gi|17402931 sperm associated antigen 11B isoform C preproprotein
           [Homo sapiens]
          Length = 113

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 54  CTAIGGRCKNQCDDSEFRISYCARPTTHCCV 84
           C    G C+  C+  E ++ YC++    CC+
Sbjct: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112


>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
          Length = 72

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 60 RCKNQCDDSEFRISYCARPTTH-CCVTECDPTDPNNWIP 97
          RC+ +C   E+RI  C  P T+ CC+ + D +  N   P
Sbjct: 36 RCRKKCRSQEYRIGRC--PNTYACCLRKWDESLLNRTKP 72


>gi|83582800 beta-defensin 116 [Homo sapiens]
          Length = 102

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 51 WKSCTAIGGRCKNQCDDSEFRISYCARPTTH-CCV 84
          W  C    G C+N C   E+ I Y   P    CC+
Sbjct: 37 WNPCELYQGMCRNAC--REYEIQYLTCPNDQKCCL 69


>gi|239755157 PREDICTED: similar to astrotactin 2 [Homo sapiens]
          Length = 451

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 41  SEGHHITFSRWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCCVTECDPTDPNNWIPK 98
           SEG ++  S W +   +    +        R   C + TT  C   CDP   + W+ +
Sbjct: 333 SEGSYLDISDWLNPAKLSLYYQINATSPWVR-DLCGQRTTDACEQLCDPETESGWLAR 389


>gi|83582796 beta-defensin 113 [Homo sapiens]
          Length = 82

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 50 RWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCC 83
          R + C  + G CK +C+  E+   YC      CC
Sbjct: 31 RKRECQLVRGACKPECNSWEYVYYYC--NVNPCC 62


>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
          precursor [Homo sapiens]
          Length = 616

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 59 GRCKNQCDDSEFRISYCARPTTHCCVTECDPTD-PNNWIPKD 99
          GRC N+C+  ++  S C   +   C+  C P +  ++W  +D
Sbjct: 44 GRCCNKCEPGKYMSSKCTTTSDSVCL-PCGPDEYLDSWNEED 84


>gi|58865339 defensin, beta 121 [Homo sapiens]
          Length = 76

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 54 CTAIGGRCKNQCDDSEFRISYCARPTTHCCV 84
          C    GRC+  C +SE     C +    CCV
Sbjct: 23 CWGKSGRCRTTCKESEVYYILC-KTEAKCCV 52


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.130    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,907,871
Number of Sequences: 37866
Number of extensions: 202631
Number of successful extensions: 463
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 18
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.