Guide to the Human Genome
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Name: ACOT1 Sequence: fasta or formatted (421aa) NCBI GI: 81230485
Description:

acyl-CoA thioesterase 1

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         37           2
 C cysteine            1.7          7           2
 D aspartate           4.0         17           2
 E glutamate           7.6         32           2
 F phenylalanine       3.8         16           2
 G glycine            10.5         44           3
 H histidine           3.1         13           1
 I isoleucine          3.6         15           2
 K lysine              4.3         18           1
 L leucine            12.1         51           2
 M methionine          1.7          7           1
 N asparagine          2.1          9           1
 P proline             8.3         35           2
 Q glutamine           2.1          9           1
 R arginine            7.1         30           2
 S serine              3.6         15           1
 T threonine           3.8         16           1
 V valine              7.4         31           2
 W tryptophan          1.2          5           1
 Y tyrosine            3.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acyl-CoA thioesterase 1 
ACOT2                 0.990   acyl-CoA thioesterase 2 
ACOT4                 0.710   acyl-CoA thioesterase 4 
BAAT                  0.369   bile acid Coenzyme A: amino acid N-acyltransferase ...
BAAT                  0.369   bile acid Coenzyme A: amino acid N-acyltransferase [H...
ACOT6                 0.281   acyl-CoA thioesterase 6 
LOC100131818          0.010   PREDICTED: hypothetical protein 
LOC100131818          0.010   PREDICTED: hypothetical protein 
DCHS2                 0.010   dachsous 2 isoform 3 
DCHS2                 0.010   dachsous 2 isoform 2 
TIAM1                 0.008   T-cell lymphoma invasion and metastasis 1 
ESF1                  0.008   ABT1-associated protein 
GPT2                  0.006   glutamic pyruvate transaminase 2 isoform 2 
GPT2                  0.006   glutamic pyruvate transaminase 2 isoform 1 
FAM47A                0.006   hypothetical protein LOC158724 
FARP2                 0.006   FERM, RhoGEF and pleckstrin domain protein 2 
ALDH6A1               0.005   aldehyde dehydrogenase 6A1 precursor 
SHKBP1                0.005   SH3KBP1 binding protein 1 
LOC100293575          0.005   PREDICTED: hypothetical protein 
LOC100290681          0.005   PREDICTED: hypothetical protein XP_002346859 
LOC100287330          0.005   PREDICTED: hypothetical protein XP_002342702 
RNF43                 0.005   ring finger protein 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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