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Search of human proteins with 8051631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 610 e-175
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 562 e-160
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 283 1e-76
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 283 1e-76
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 283 1e-76
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 283 1e-76
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 222 3e-58
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 222 3e-58
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 217 9e-57
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 217 9e-57
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 206 2e-53
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 204 1e-52
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 201 9e-52
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 201 9e-52
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 201 9e-52
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 62 5e-10
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 62 5e-10
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 62 5e-10
gi|84570137 homeobox B3 [Homo sapiens] 62 8e-10
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 59 5e-09
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 57 3e-08
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 57 3e-08
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 56 5e-08
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 55 6e-08
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 55 6e-08
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 54 1e-07
gi|6912752 zinc finger protein 281 [Homo sapiens] 54 1e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 54 1e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 54 1e-07
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 54 1e-07
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 610 bits (1572), Expect = e-175
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR 120
QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR 120
Query: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 180
DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 180
Query: 181 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 240
KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 240
Query: 241 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 300
GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
Sbjct: 241 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 300
Query: 301 DDGALQ 306
DDGALQ
Sbjct: 301 DDGALQ 306
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 562 bits (1449), Expect = e-160
Identities = 290/306 (94%), Positives = 290/306 (94%), Gaps = 16/306 (5%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR 120
QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY----------- 109
Query: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 180
RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
Sbjct: 110 -----RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 164
Query: 181 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 240
KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
Sbjct: 165 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 224
Query: 241 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 300
GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
Sbjct: 225 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 284
Query: 301 DDGALQ 306
DDGALQ
Sbjct: 285 DDGALQ 290
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 283 bits (725), Expect = 1e-76
Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168
GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 283 bits (725), Expect = 1e-76
Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168
GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 283 bits (725), Expect = 1e-76
Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168
GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 283 bits (725), Expect = 1e-76
Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 14 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 74 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
Query: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168
GY+FDYDYYRDDFY+RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 192
Query: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 193 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 246
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 222 bits (566), Expect = 3e-58
Identities = 125/213 (58%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-SGYIFDYDYYRDDFY 124
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S + DYD+ R D+Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQR-DYY 120
Query: 125 DRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
DR++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
K +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 176 KGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 222 bits (566), Expect = 3e-58
Identities = 125/213 (58%), Positives = 155/213 (72%), Gaps = 10/213 (4%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-SGYIFDYDYYRDDFY 124
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S + DYD+ R D+Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQR-DYY 120
Query: 125 DRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
DR++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
K +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 176 KGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 217 bits (553), Expect = 9e-57
Identities = 125/226 (55%), Positives = 155/226 (68%), Gaps = 23/226 (10%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY--------------SG 111
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
Query: 112 YIFDYDYYRDDFYDRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFAR 169
+ DYD+ R D+YDR++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 122 FDLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNS 175
Query: 170 STAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 176 KSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 217 bits (553), Expect = 9e-57
Identities = 125/226 (55%), Positives = 155/226 (68%), Gaps = 23/226 (10%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY--------------SG 111
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y S
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
Query: 112 YIFDYDYYRDDFYDRLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFAR 169
+ DYD+ R D+YDR++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 122 FDLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNS 175
Query: 170 STAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 215
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 176 KSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 206 bits (525), Expect = 2e-53
Identities = 130/296 (43%), Positives = 170/296 (57%), Gaps = 20/296 (6%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y G FD DY ++ D+Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYGFQRDYY 120
Query: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
D ++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGG 242
K +LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETH 235
Query: 243 GSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQD 297
GG ++E G P + D GD++ L+ E+E E +D
Sbjct: 236 VKMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGED 282
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 204 bits (518), Expect = 1e-52
Identities = 130/303 (42%), Positives = 173/303 (57%), Gaps = 21/303 (6%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
+ARAAV GE+GR++A Q IN+A EPK +R G+KR+A+ +Y G FD DY ++ D+Y
Sbjct: 62 NARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYGFQRDYY 120
Query: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
D ++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGG 242
K +LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETH 235
Query: 243 GSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQDT-DA 300
GG ++E G P + D GD + L+ ++E++ E +D D+
Sbjct: 236 VKMESEGGAED---------SAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDS 286
Query: 301 DDG 303
+G
Sbjct: 287 TNG 289
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 201 bits (510), Expect = 9e-52
Identities = 114/212 (53%), Positives = 145/212 (68%), Gaps = 10/212 (4%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y G FD DY + D+Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYNLQRDYY 120
Query: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAE 214
K +LQAIK ELTQIK +D+LL LE+I E
Sbjct: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 201 bits (510), Expect = 9e-52
Identities = 114/212 (53%), Positives = 145/212 (68%), Gaps = 10/212 (4%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y G FD DY + D+Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYNLQRDYY 120
Query: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAE 214
K +LQAIK ELTQIK +D+LL LE+I E
Sbjct: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 201 bits (510), Expect = 9e-52
Identities = 114/212 (53%), Positives = 145/212 (68%), Gaps = 10/212 (4%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y G FD DY + D+Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYNLQRDYY 120
Query: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
Query: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAE 214
K +LQAIK ELTQIK +D+LL LE+I E
Sbjct: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 148 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 207
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 208 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 148 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 207
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 208 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 148 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 207
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 208 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 61.6 bits (148), Expect = 8e-10
Identities = 26/41 (63%), Positives = 27/41 (65%)
Query: 216 KANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 256
K N G +G GGG GGGGGGG G GG GGGGGGG PP
Sbjct: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPP 183
Score = 52.0 bits (123), Expect = 7e-07
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 213 AEQKANPDGKKKGDGGGAGGGGGGGGSGG-GGSGGGGGGGSSRPPAPQENTTSE 265
+ Q + G G GGGGGGGG GG GGSGGGGGGG +P + S+
Sbjct: 136 SRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK 189
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 58.9 bits (141), Expect = 5e-09
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 211 IAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 256
+A+ N G G GGG+GGG G GG G GG+GGGGGGGS PP
Sbjct: 29 LASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPP 74
Score = 55.5 bits (132), Expect = 6e-08
Identities = 26/41 (63%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 221 GKKKGDGGGAGGGGGGG-GSGGGGSGGGGGGGSSRPPAPQE 260
G G GGGAGGG GGG G+GGGG+GG GGGG AP E
Sbjct: 35 GNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPE 75
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 220 DGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEA 273
+G+ G GG GGGGGGGG GGGG GGGGGGG + AP T GL E+
Sbjct: 443 EGQLYGPCGG-GGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQES 495
Score = 48.1 bits (113), Expect = 9e-06
Identities = 24/43 (55%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 215 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGG-GGGGSSRPP 256
Q P G G GGG GGGGGGGG GGGG G G +RPP
Sbjct: 445 QLYGPCGGGGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPP 487
Score = 47.4 bits (111), Expect = 2e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 223 KKGDGGGAGGGGGGGGSGGGGSGGGGGGG 251
++G G GGGGGGG GGGG GGGGGGG
Sbjct: 442 EEGQLYGPCGGGGGGGGGGGGGGGGGGGG 470
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 56.6 bits (135), Expect = 3e-08
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 214 EQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEA 273
+ +++P + G GGG GGGGGGGG GGG GGG GGG+ +P L G A
Sbjct: 49 DDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRE------LDMGAA 102
Query: 274 -RTRDDGDEEGLLTHSEEELEHSQD 297
R+R+ G LT EL+ ++
Sbjct: 103 ERSREPGSPR--LTEVSPELKDRKE 125
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 213 AEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
A + A G G GGG GGGGG GGGG+GGG GGG S
Sbjct: 55 AVRAAGGGGGGGGGGGGG---GGGGGVGGGGAGGGAGGGRS 92
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 55.8 bits (133), Expect = 5e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 193 ELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 252
E+ QI N L+ L Q+ + G G GGG+GG GGGGGSGGGG+ GG G S
Sbjct: 2265 EINQILENQRNFLNALTSPIEYQRNHSGG---GGGGGSGGSGGGGGSGGGGAPSGGSGHS 2321
Query: 253 SRPP----APQENTTSEAGLPQ 270
P AP + + + +PQ
Sbjct: 2322 GGPSSCGGAPSTSRSRPSRIPQ 2343
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 230 AGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTR 276
+GGGGGGG G GG GG GGGG+ + S G +R+R
Sbjct: 2291 SGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSR 2337
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 222 KKKGDGGGAGGGGGGGGSG-GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGD 280
K KG G G GGGG GGG G GGG GGGGGG P +AG+P+ + D D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 281 EEG 283
G
Sbjct: 121 SGG 123
Score = 41.6 bits (96), Expect = 9e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 225 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 274
G GG GGGGGGGG GG G G GG + P+ +T+ G +R
Sbjct: 76 GGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSR 125
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 225 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 269
G GGG GG GGGG G G G R A ++N + + P
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPP 127
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 222 KKKGDGGGAGGGGGGGGSG-GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGD 280
K KG G G GGGG GGG G GGG GGGGGG P +AG+P+ + D D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 281 EEG 283
G
Sbjct: 121 SGG 123
Score = 41.6 bits (96), Expect = 9e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 225 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 274
G GG GGGGGGGG GG G G GG + P+ +T+ G +R
Sbjct: 76 GGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSR 125
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 225 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 269
G GGG GG GGGG G G G R A ++N + + P
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPP 127
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 54.3 bits (129), Expect = 1e-07
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 28/168 (16%)
Query: 22 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHK--------GYAFVQYSNERHARAAVL 73
++FIG LNT +K+ +E +F KYGR+ + K G+AFV + + A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 74 GENGRVLAGQTLDINMA----------GEPKPDR----PKGLK--RAASAIYSGYIFDYD 117
NG+ L G+ + + A G P P R P+GL+ R S G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGG 127
Query: 118 YYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVK 165
+ D Y F+ P+PV R P PR P +R + PV+
Sbjct: 128 HMDDGGYSMNFNMSSSRGPLPVKRGPP---PRSGGPPPKRSAPSGPVR 172
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/45 (62%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 227 GGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQG 271
GGG G GG GSGGGGSGGGGGGGSS A E T PQG
Sbjct: 10 GGGGTGSSGGSGSGGGGSGGGGGGGSSGRRAEMEPT-----FPQG 49
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 225 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPA-PQENTTSEAGLPQGEARTRDDG 279
G G G G GGGGSGGGG GG G + P PQ LP + TR G
Sbjct: 13 GTGSSGGSGSGGGGSGGGGGGGSSGRRAEMEPTFPQGMVMFNHRLPPVTSFTRPAG 68
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 229 GAGGGGGGGGSGGGGSGGGGGGGSS 253
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 227 GGGAGGGGGGGGSGGGGSGGGGGGGSS 253
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 9e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 219 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 250
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 200 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 252
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 221 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 267
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 217 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 4e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 225 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 251
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.92
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 225 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 255
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 2.0
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 211 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 253
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 225 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 253
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 225 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 254
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 229 GAGGGGGGGGSGGGGSGGGGGGGSS 253
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 227 GGGAGGGGGGGGSGGGGSGGGGGGGSS 253
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 9e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 219 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 250
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 200 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 252
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 221 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 267
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 217 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 4e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 225 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 251
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.92
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 225 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 255
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 2.0
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 211 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 253
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 225 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 253
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 225 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 254
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 229 GAGGGGGGGGSGGGGSGGGGGGGSS 253
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 227 GGGAGGGGGGGGSGGGGSGGGGGGGSS 253
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 9e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 219 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 250
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 200 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 252
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 221 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 267
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 217 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 253
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 4e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 225 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 251
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.92
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 225 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 255
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 2.0
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 211 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 253
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 225 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 253
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 225 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 254
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,752,875
Number of Sequences: 37866
Number of extensions: 754608
Number of successful extensions: 35234
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 350
Number of HSP's that attempted gapping in prelim test: 10233
Number of HSP's gapped (non-prelim): 10913
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.