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Search of human proteins with 7710150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7710150 mesenchyme homeobox 1 isoform 2 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7710150 mesenchyme homeobox 1 isoform 2 [Homo sapiens] 394 e-110
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 334 2e-92
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 85 3e-17
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 57 9e-09
gi|37595553 ring finger protein 111 [Homo sapiens] 34 0.081
gi|30089935 transmembrane protein 132A isoform a [Homo sapiens] 34 0.081
gi|30089937 transmembrane protein 132A isoform b [Homo sapiens] 34 0.081
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 33 0.18
gi|11386183 WAS protein family, member 2 [Homo sapiens] 32 0.31
gi|119220564 one cut domain, family member 2 [Homo sapiens] 32 0.40
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens] 31 0.53
gi|169204830 PREDICTED: hypothetical protein LOC196446 [Homo sap... 31 0.53
gi|239750374 PREDICTED: chromosome 12 open reading frame 28 [Hom... 31 0.53
gi|169204180 PREDICTED: hypothetical protein LOC196446 [Homo sap... 31 0.53
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 31 0.69
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 31 0.69
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 31 0.69
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 30 0.90
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 30 0.90
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 30 0.90
gi|28559039 mediator complex subunit 1 [Homo sapiens] 30 0.90
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 30 0.90
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 30 1.2
gi|55750053 atrophin-1 [Homo sapiens] 30 1.2
gi|55750041 atrophin-1 [Homo sapiens] 30 1.2
gi|223972612 Crm, cramped-like [Homo sapiens] 30 1.5
gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo s... 30 1.5
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 30 1.5
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 30 1.5
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 29 2.0
>gi|7710150 mesenchyme homeobox 1 isoform 2 [Homo sapiens]
Length = 184
Score = 394 bits (1011), Expect = e-110
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP 60
MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
Sbjct: 1 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP 60
Query: 61 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS 120
DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
Sbjct: 61 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS 120
Query: 121 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSGQSVVPEPKDEVEACEGRSAHLPQ 180
LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSGQSVVPEPKDEVEACEGRSAHLPQ
Sbjct: 121 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSGQSVVPEPKDEVEACEGRSAHLPQ 180
Query: 181 WAGP 184
WAGP
Sbjct: 181 WAGP 184
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 334 bits (857), Expect = 2e-92
Identities = 161/177 (90%), Positives = 166/177 (93%), Gaps = 1/177 (0%)
Query: 1 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP 60
MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP
Sbjct: 1 MDPAASSCMRSLQPPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYP 60
Query: 61 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS 120
DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS
Sbjct: 61 DFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSS 120
Query: 121 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS-GQSVVPEPKDEVEACEGRSA 176
LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS Q +P+ +A + R+A
Sbjct: 121 LGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTA 177
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 85.1 bits (209), Expect = 3e-17
Identities = 46/62 (74%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 116 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS-GQSVVPEPKDEVEACEGR 174
MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS Q +P+ +A + R
Sbjct: 1 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 60
Query: 175 SA 176
+A
Sbjct: 61 TA 62
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 57.0 bits (136), Expect = 9e-09
Identities = 56/191 (29%), Positives = 76/191 (39%), Gaps = 46/191 (24%)
Query: 17 PVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQ 76
P++GCLR+PH+ A GL + + + H + D ++ YP+ S S + P
Sbjct: 4 PLFGCLRSPHAT---AQGLHPFSQSSLALHGRSDHMS-----YPELSTSSSSCIIAGYPN 55
Query: 77 EEHIFTEQHPAFPQ-------------------SPNWHFPV-----SDARRRPNSGP-AG 111
EE +F QH NWH P S AR P +G
Sbjct: 56 EEGMFASQHHRGHHHHHHHHHHHHHQQQQHQALQTNWHLPQMSSPPSAARHSLCLQPDSG 115
Query: 112 GSKEMGTS---------SLGLVDTTGG---PGDDYGVLGSTANETEKKSSRRRKESSGQS 159
G E+G+S SLG TG PGD YG + E EK+S +RK S S
Sbjct: 116 GPPELGSSPPVLCSNSSSLGSSTPTGAACAPGD-YGRQALSPAEAEKRSGGKRKSDSSDS 174
Query: 160 VVPEPKDEVEA 170
K EV +
Sbjct: 175 QEGNYKSEVNS 185
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 33.9 bits (76), Expect = 0.081
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 65 SCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPN-SGPAGGSKEMGTS 119
SC H H HPA P SP++ P R P P G + GTS
Sbjct: 503 SCFQQHGHHFQHHHHHHHTPHPAVPVSPSFSDPACPVERPPQVQAPCGANSSSGTS 558
>gi|30089935 transmembrane protein 132A isoform a [Homo sapiens]
Length = 1024
Score = 33.9 bits (76), Expect = 0.081
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 43/164 (26%)
Query: 15 PAPVWGCLRNPHSEGNGASGLPHY----PPTPFSFHQKPDFLATATAAYPDFSASCLAAT 70
PA G G GA GLP + PP P + LA+ TA L
Sbjct: 717 PAEEQGAQLGVVVSGAGAEGLPLHVALHPPEPCRRGRHRVPLASGTA--------WLGLP 768
Query: 71 PHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGP 130
P S P PA P SP W P ++A GG +++ G
Sbjct: 769 PASTPA---------PALPSSPAWSPPATEA-------TMGGKRQV----------AGSV 802
Query: 131 GDDYGVLG--STANETEKK---SSRRRKESSGQSVVPEPKDEVE 169
G + GV G A E +K +R +E + +VP P+ E
Sbjct: 803 GGNTGVRGKFERAEEEARKEETEAREEEEEEEEEMVPAPQHVTE 846
Score = 26.9 bits (58), Expect = 9.9
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 86 PAFPQSPNWHFPVSDARR------RPNSGPAGGSKEMGTSSLGLVDT-TGGPGDDYGVLG 138
P PQ NW + +D R + GP G S G + T PG G
Sbjct: 888 PTSPQPHNWVWLGTDQEELSRQLDRQSPGPPKGEGSCPCESGGGGEAPTLAPGPPGGTTS 947
Query: 139 STANETEKKSSRRRKESSGQSVVPEP 164
S++ K++ RRK + P P
Sbjct: 948 SSSTLARKEAGGRRKRVEFVTFAPAP 973
>gi|30089937 transmembrane protein 132A isoform b [Homo sapiens]
Length = 1023
Score = 33.9 bits (76), Expect = 0.081
Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 43/164 (26%)
Query: 15 PAPVWGCLRNPHSEGNGASGLPHY----PPTPFSFHQKPDFLATATAAYPDFSASCLAAT 70
PA G G GA GLP + PP P + LA+ TA L
Sbjct: 716 PAEEQGAQLGVVVSGAGAEGLPLHVALHPPEPCRRGRHRVPLASGTA--------WLGLP 767
Query: 71 PHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGP 130
P S P PA P SP W P ++A GG +++ G
Sbjct: 768 PASTPA---------PALPSSPAWSPPATEA-------TMGGKRQV----------AGSV 801
Query: 131 GDDYGVLG--STANETEKK---SSRRRKESSGQSVVPEPKDEVE 169
G + GV G A E +K +R +E + +VP P+ E
Sbjct: 802 GGNTGVRGKFERAEEEARKEETEAREEEEEEEEEMVPAPQHVTE 845
Score = 26.9 bits (58), Expect = 9.9
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 86 PAFPQSPNWHFPVSDARR------RPNSGPAGGSKEMGTSSLGLVDT-TGGPGDDYGVLG 138
P PQ NW + +D R + GP G S G + T PG G
Sbjct: 887 PTSPQPHNWVWLGTDQEELSRQLDRQSPGPPKGEGSCPCESGGGGEAPTLAPGPPGGTTS 946
Query: 139 STANETEKKSSRRRKESSGQSVVPEP 164
S++ K++ RRK + P P
Sbjct: 947 SSSTLARKEAGGRRKRVEFVTFAPAP 972
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 32.7 bits (73), Expect = 0.18
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 21 CLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHI 80
C+++P + AS P PP P + P + T + + S + P L +
Sbjct: 180 CMQDP----SPASLSPPAPPAPLASTLSPGPM-TFSEPFGPHSTLSASGPPEPLLPLKCP 234
Query: 81 FTEQHPAFPQSPNWHFPVSDARRRPNSGPAG 111
T+ H FP SP H P++ + P+S AG
Sbjct: 235 ATQPHVVFPPSPQPHGPLASSPPPPDSSLAG 265
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 32.0 bits (71), Expect = 0.31
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 14 PPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLA 53
PP P+ G P G G+ G P PP+P SF PDF A
Sbjct: 325 PPPPMIGIPPPPPPVGFGSPGTPP-PPSPPSFPPHPDFAA 363
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 31.6 bits (70), Expect = 0.40
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 NPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSL 74
+PH G GA+G PP P + HQ+ L TA AA S S + + S+
Sbjct: 66 SPHHAGRGAAGSLRGPPPPPTAHQE---LGTAAAAAAAASRSAMVTSMASI 113
>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
Length = 362
Score = 31.2 bits (69), Expect = 0.53
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 85 HPAFPQSPNW--HFPVSDARRRPNSGPAGGSKEMGTSSLGLVDT-TGGPGDDYGVLGSTA 141
+PA +P + HF + + P GPA + G V T GG +D GV+ TA
Sbjct: 203 YPAMYPAPQYQGHFQLFRGLQGPAPGPATSPSFLSCLGPGTVGTGLGGTAEDPGVIAETA 262
Query: 142 NETEKKSSRRRKESSGQS 159
+ S RK + +
Sbjct: 263 PSKRGRRSWARKRQAAHT 280
>gi|169204830 PREDICTED: hypothetical protein LOC196446 [Homo
sapiens]
Length = 910
Score = 31.2 bits (69), Expect = 0.53
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 35 LPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHP 86
+P+ PP+ + Q+P L TA+++ P+ S L TP SL E F E P
Sbjct: 658 VPNLPPSNITSSQEPALLPTASSSAPNTS---LVTTPASLQVPEITFCEILP 706
>gi|239750374 PREDICTED: chromosome 12 open reading frame 28 [Homo
sapiens]
Length = 972
Score = 31.2 bits (69), Expect = 0.53
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 35 LPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHP 86
+P+ PP+ + Q+P L TA+++ P+ S L TP SL E F E P
Sbjct: 720 VPNLPPSNITSSQEPALLPTASSSAPNTS---LVTTPASLQVPEITFCEILP 768
>gi|169204180 PREDICTED: hypothetical protein LOC196446 [Homo
sapiens]
Length = 972
Score = 31.2 bits (69), Expect = 0.53
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 35 LPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHP 86
+P+ PP+ + Q+P L TA+++ P+ S L TP SL E F E P
Sbjct: 720 VPNLPPSNITSSQEPALLPTASSSAPNTS---LVTTPASLQVPEITFCEILP 768
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 30.8 bits (68), Expect = 0.69
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 72 HSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSK 114
H P+E+ T+ P P P P SDA ++P S P G S+
Sbjct: 965 HEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSR 1007
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 30.8 bits (68), Expect = 0.69
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 72 HSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSK 114
H P+E+ T+ P P P P SDA ++P S P G S+
Sbjct: 981 HEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSR 1023
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 30.8 bits (68), Expect = 0.69
Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 12/165 (7%)
Query: 32 ASGLPHYPPT-PFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQ 90
AS +P PP P + ++P P +A + E + P+
Sbjct: 434 ASAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPR 493
Query: 91 SPNWHFP-----VSDARRRPNSGPAGGSKEMGTSSLGLVDT---TGGPGDDYGVLGSTAN 142
+P P S +RR G AG E LG + GG G YG S+A+
Sbjct: 494 APAARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSAS 553
Query: 143 ETEK---KSSRRRKESSGQSVVPEPKDEVEACEGRSAHLPQWAGP 184
E E S+ + SG V P+ A G A AGP
Sbjct: 554 EGESPAFSSASSDSDGSGGLVWPQQLVAATAASGGGAGAGAPAGP 598
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.90
Identities = 51/190 (26%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 3 PAASSCMRSLQPPAP--VWGCLRNPHSEGNGASGLPHYPPTPF--SFHQKPDFLATATAA 58
PAAS + S P P C +P E LP PF QK D T T
Sbjct: 11 PAASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKAD---TETIG 67
Query: 59 YPDFSASCLAATPHSLPQEEHIFTEQHPAF--PQSPNWHFPVSDARRRPNSGPAGGSKEM 116
S A P + PQ P F SP P S P G
Sbjct: 68 SSGGSRGPSPAHPWTTPQPG---PPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGP-- 122
Query: 117 GTSSLGLVDTTGGPG-DDYGVLGSTANETEKK-SSRRRKESSGQSVVPEPKDEVEACEGR 174
T G ++ G G Y S++ + S+RR S G PE + + GR
Sbjct: 123 -TYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
Query: 175 SAHLPQWAGP 184
SA GP
Sbjct: 182 SARARTRRGP 191
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.90
Identities = 51/190 (26%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 3 PAASSCMRSLQPPAP--VWGCLRNPHSEGNGASGLPHYPPTPF--SFHQKPDFLATATAA 58
PAAS + S P P C +P E LP PF QK D T T
Sbjct: 11 PAASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKAD---TETIG 67
Query: 59 YPDFSASCLAATPHSLPQEEHIFTEQHPAF--PQSPNWHFPVSDARRRPNSGPAGGSKEM 116
S A P + PQ P F SP P S P G
Sbjct: 68 SSGGSRGPSPAHPWTTPQPG---PPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGP-- 122
Query: 117 GTSSLGLVDTTGGPG-DDYGVLGSTANETEKK-SSRRRKESSGQSVVPEPKDEVEACEGR 174
T G ++ G G Y S++ + S+RR S G PE + + GR
Sbjct: 123 -TYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
Query: 175 SAHLPQWAGP 184
SA GP
Sbjct: 182 SARARTRRGP 191
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.90
Identities = 51/190 (26%), Positives = 62/190 (32%), Gaps = 17/190 (8%)
Query: 3 PAASSCMRSLQPPAP--VWGCLRNPHSEGNGASGLPHYPPTPF--SFHQKPDFLATATAA 58
PAAS + S P P C +P E LP PF QK D T T
Sbjct: 11 PAASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKAD---TETIG 67
Query: 59 YPDFSASCLAATPHSLPQEEHIFTEQHPAF--PQSPNWHFPVSDARRRPNSGPAGGSKEM 116
S A P + PQ P F SP P S P G
Sbjct: 68 SSGGSRGPSPAHPWTTPQPG---PPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGP-- 122
Query: 117 GTSSLGLVDTTGGPG-DDYGVLGSTANETEKK-SSRRRKESSGQSVVPEPKDEVEACEGR 174
T G ++ G G Y S++ + S+RR S G PE + + GR
Sbjct: 123 -TYCAGAGNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
Query: 175 SAHLPQWAGP 184
SA GP
Sbjct: 182 SARARTRRGP 191
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 30.4 bits (67), Expect = 0.90
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 48 KPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNS 107
KP L + + P+ S S HS P A P P P S + P S
Sbjct: 1177 KPSSLMNPSLSKPNISPS------HSRPPGG----SDKLASPMKPVPGTPPSSKAKSPIS 1226
Query: 108 GPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSGQSVVPEPKDE 167
+GGS GTSS + ++ G G + T + ++ SS S + +++
Sbjct: 1227 SGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQ 1286
Query: 168 VEACEGRS 175
+ +G+S
Sbjct: 1287 HGSSKGKS 1294
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 30.4 bits (67), Expect = 0.90
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 28/124 (22%)
Query: 14 PPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHS 73
PP P +S G G+SG H DF+ D SA+ AA H
Sbjct: 170 PPPPALSGYTTTNSGGGGSSGKGH----------SRDFVLRR-----DLSATAPAAAMHG 214
Query: 74 LP----QEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSL--GLVDTT 127
P Q + QHPA P P S SG G G +L L DT
Sbjct: 215 APLGGEQRSGTGSPQHPAPP-------PHSAGMFISASGTYAGPDGSGGPALFPALHDTP 267
Query: 128 GGPG 131
G PG
Sbjct: 268 GAPG 271
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 1.2
Identities = 37/163 (22%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 14 PPAPVWGCLRNPHSEGNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHS 73
PP P +G P G P PP PF T A P P
Sbjct: 298 PPVPGYGPPPGPPPPQQG----PPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPP 353
Query: 74 LPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGDD 133
P F FP N P SD+R P + P G G PG +
Sbjct: 354 APHVNPAF------FPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDY------GPPGRE 401
Query: 134 YGVLGSTANETEKKSSRRRKESSGQSVVPEPKDEVEACEGRSA 176
+ +E E + R + S + + A + SA
Sbjct: 402 MDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSA 444
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 11 SLQPPA----PVWGCLRNPHSEGNGASGLPHYP-------PTPFSFHQKPDFLATATAAY 59
S PP P+ G L +PH+ G G GLP P P+P S +
Sbjct: 314 SASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRF 373
Query: 60 PDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNW 94
P S+S +A S PA P++
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSY 408
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 11 SLQPPA----PVWGCLRNPHSEGNGASGLPHYP-------PTPFSFHQKPDFLATATAAY 59
S PP P+ G L +PH+ G G GLP P P+P S +
Sbjct: 314 SASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRF 373
Query: 60 PDFSASCLAATPHSLPQEEHIFTEQHPAFPQSPNW 94
P S+S +A S PA P++
Sbjct: 374 PYSSSSSSSAAASSSSSSSSSSASPFPASQALPSY 408
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 29.6 bits (65), Expect = 1.5
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 71 PHSLPQEEHIFTEQHPAFPQSPNWHFPVSDARRRPNSGPAGGS------KEMGTSSLGLV 124
P PQ++H F PQS P D SG AGGS E G SS G V
Sbjct: 72 PQGSPQDQHHFLRSSVR-PQSKR---PRKDPPSAVGSGNAGGSGPRGKGAEGGGSSSGNV 127
Query: 125 D------TTGGPGDDYGVLGSTANETEK-KSSRRRKES 155
GG LGS+ E E+ K RR+ ES
Sbjct: 128 SGVAPAAPAGGSRSSSRNLGSSGGEKEEGKKVRRQWES 165
>gi|187829485 autism susceptibility candidate 2 isoform 3 [Homo
sapiens]
Length = 266
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 107 SGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS 156
+G AGG T +L L ++G +D G S+A + R+R+ES+
Sbjct: 32 AGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRREST 81
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 107 SGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS 156
+G AGG T +L L ++G +D G S+A + R+R+ES+
Sbjct: 32 AGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRREST 81
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 107 SGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS 156
+G AGG T +L L ++G +D G S+A + R+R+ES+
Sbjct: 32 AGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRREST 81
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 29.3 bits (64), Expect = 2.0
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 33 SGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAATPHSLPQEEHIFTEQHPAFPQSP 92
+G +Y P S+ K A YP A P P T HP P SP
Sbjct: 146 TGPQNYSPQYDSYDVKSGVAVGGLAGYPG------PAGPPGPPGPPG--TSGHPGSPGSP 197
Query: 93 NWHFPVSDARRRPNSGPAGGSKEMGTSS-LGLVDTTGGPG 131
+ P + + SGP G +G S G +G PG
Sbjct: 198 GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPG 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,916,264
Number of Sequences: 37866
Number of extensions: 534412
Number of successful extensions: 1793
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1742
Number of HSP's gapped (non-prelim): 126
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.