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Search of human proteins with 7706663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706663 COMM domain containing 10 [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706663 COMM domain containing 10 [Homo sapiens] 390 e-109
gi|21361661 COMM domain containing 4 [Homo sapiens] 46 2e-05
gi|6912278 COMM domain containing 3 [Homo sapiens] 39 0.004
gi|114688046 TBC1 domain family, member 4 [Homo sapiens] 35 0.057
gi|124487382 COMM domain containing 5 [Homo sapiens] 34 0.074
gi|154800418 COMM domain containing 5 [Homo sapiens] 34 0.074
gi|19923430 COMM domain containing 5 [Homo sapiens] 34 0.074
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 33 0.13
gi|24797143 sorting nexin 14 isoform b [Homo sapiens] 32 0.48
gi|24797145 sorting nexin 14 isoform a [Homo sapiens] 32 0.48
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 32 0.48
gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 32 0.48
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 31 0.63
gi|170784854 PTPRF interacting protein, binding protein 2 (lipri... 31 0.63
gi|109134347 NY-REN-58 antigen [Homo sapiens] 31 0.63
gi|109134355 NY-REN-58 antigen [Homo sapiens] 31 0.63
gi|163659918 sacsin [Homo sapiens] 31 0.82
gi|40807469 TRAF interacting protein [Homo sapiens] 31 0.82
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 31 0.82
gi|219804014 Fc fragment of IgG, high affinity Ib, receptor (CD6... 30 1.4
gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64... 30 1.4
gi|109255236 centrosomal protein 63 isoform d [Homo sapiens] 30 1.4
gi|109255226 centrosomal protein 63 isoform c [Homo sapiens] 30 1.4
gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64... 30 1.8
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 30 1.8
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens] 30 1.8
gi|122937396 coiled-coil domain containing 150 [Homo sapiens] 30 1.8
gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens] 29 2.4
gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo sapi... 29 2.4
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi... 29 2.4
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 390 bits (1001), Expect = e-109
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAVPAALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAA 60
MAVPAALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAA
Sbjct: 1 MAVPAALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAA 60
Query: 61 FSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQET 120
FSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQET
Sbjct: 61 FSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQET 120
Query: 121 VEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFS 180
VEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFS
Sbjct: 121 VEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFS 180
Query: 181 HKELFDFYNKLETIQAQLDSLT 202
HKELFDFYNKLETIQAQLDSLT
Sbjct: 181 HKELFDFYNKLETIQAQLDSLT 202
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 46.2 bits (108), Expect = 2e-05
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 3/183 (1%)
Query: 19 VSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFI 78
+S + + + + L +++L++L E+ KL A E D+ + +SFI
Sbjct: 19 ISTLAKMSSVKLRLLCSQVLKEL---LGQGIDYEKILKLTADAKFESGDVKATVAVLSFI 75
Query: 79 LEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVG 138
L A H+V +L +L+ + L ++ A + + + R L +L VG
Sbjct: 76 LSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVG 135
Query: 139 WQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQL 198
W+++ ++ S ++ P L+L V + V + S + +L+ Q +
Sbjct: 136 WRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLM 195
Query: 199 DSL 201
SL
Sbjct: 196 SSL 198
>gi|6912278 COMM domain containing 3 [Homo sapiens]
Length = 195
Score = 38.5 bits (88), Expect = 0.004
Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 12 SPSMKKAVSLI---NAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDL 68
S S++K ++ + D+ F LL Q L L A++ + + L+ + +
Sbjct: 4 SESVQKGFQMLADPRSFDSNAFTLLLRAAFQSL-LDAQADEAVLDHPDLKHIDPVVLKHC 62
Query: 69 HLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRI 128
H T +ILE A H + L LE+ +++ E F + + + ++E I
Sbjct: 63 HAAAAT--YILE-AGKHRADKSTLSTYLEDCKFDRERIELFCTEYQN-NKNSLEILLGSI 118
Query: 129 LAPCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFSHKELFDF 187
+ V W+L Q+ + ++ P ++ L V N DS S ++ S ++L D
Sbjct: 119 GRSLPHITDVSWRLEYQIKTNQLHRMYRPAYLVTLSVQNTDSPSYPEISFSCSMEQLQDL 178
Query: 188 YNKLETIQAQLDSLT 202
KL+ L+ T
Sbjct: 179 VGKLKDASKSLERAT 193
>gi|114688046 TBC1 domain family, member 4 [Homo sapiens]
Length = 1298
Score = 34.7 bits (78), Expect = 0.057
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 46 ESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDK 105
ESS+S E+ E L+ LE+ + L + + + + V H K AL+ LEN+ R+ K
Sbjct: 1188 ESSYSCEDSETLE---KLERANSQLKRQNMDLLEKLQVAHT-KIQALESNLENLLTRETK 1243
Query: 106 AEAFVNTWSS---MGQETVEKFRQRILA 130
++ + T Q+TVE+ R+ + A
Sbjct: 1244 MKSLIRTLEQEKMAYQKTVEQLRKLLPA 1271
>gi|124487382 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.074
Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 13 PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVL 72
P + L+ +D F +LL ++ L + E ++L + +L ++ L +L
Sbjct: 31 PEVAAMARLLGDLDRSTFRKLLKFVVSSL----QGEDCREAVQRLGVSANLPEEQLGALL 86
Query: 73 ETISFILEQAVY---HNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRIL 129
+ +L+QA+ ++KP + QL+ + + QD + + ++ Q+
Sbjct: 87 AGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQG 146
Query: 130 APCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEF 179
A + W++++ ++ SA A+ P ++QL +++ + E +F
Sbjct: 147 AWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKF 197
>gi|154800418 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.074
Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 13 PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVL 72
P + L+ +D F +LL ++ L + E ++L + +L ++ L +L
Sbjct: 31 PEVAAMARLLGDLDRSTFRKLLKFVVSSL----QGEDCREAVQRLGVSANLPEEQLGALL 86
Query: 73 ETISFILEQAVY---HNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRIL 129
+ +L+QA+ ++KP + QL+ + + QD + + ++ Q+
Sbjct: 87 AGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQG 146
Query: 130 APCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEF 179
A + W++++ ++ SA A+ P ++QL +++ + E +F
Sbjct: 147 AWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKF 197
>gi|19923430 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.074
Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 8/171 (4%)
Query: 13 PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVL 72
P + L+ +D F +LL ++ L + E ++L + +L ++ L +L
Sbjct: 31 PEVAAMARLLGDLDRSTFRKLLKFVVSSL----QGEDCREAVQRLGVSANLPEEQLGALL 86
Query: 73 ETISFILEQAVY---HNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRIL 129
+ +L+QA+ ++KP + QL+ + + QD + + ++ Q+
Sbjct: 87 AGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQG 146
Query: 130 APCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEF 179
A + W++++ ++ SA A+ P ++QL +++ + E +F
Sbjct: 147 AWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKF 197
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 33.5 bits (75), Expect = 0.13
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 51 EEEEEKLQAAFSLEK----QDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKA 106
EE EE LQA L + +DL E I + + + N+K + LE+
Sbjct: 55 EEAEELLQALHRLTRLVAFRDLSSA-EAILALFPENFHQNLKNLLTKIILEH-------- 105
Query: 107 EAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNN 166
V+TW + Q +I P +L + W+++++ + + +++ P +LQ+ +
Sbjct: 106 ---VSTWRTEAQAN------QISLP-RLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 155
Query: 167 E-----DSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSL 201
+ D S+ V VE S + L + L I+ QL ++
Sbjct: 156 DPSLCGDKPSISAVTVELSKETLDTMLDGLGRIRDQLSAV 195
>gi|24797143 sorting nexin 14 isoform b [Homo sapiens]
Length = 893
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 75 ISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQE-------TVEKFRQR 127
+ F+ + A N KP+ L+ +L+ I +QD F+N G TVE+F R
Sbjct: 272 VPFLQKFAEPRNKKPSVLKLELKQIREQQDLLFRFMNFLKQEGAVHVLQFCLTVEEFNDR 331
Query: 128 ILAP 131
IL P
Sbjct: 332 ILRP 335
>gi|24797145 sorting nexin 14 isoform a [Homo sapiens]
Length = 946
Score = 31.6 bits (70), Expect = 0.48
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 75 ISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQE-------TVEKFRQR 127
+ F+ + A N KP+ L+ +L+ I +QD F+N G TVE+F R
Sbjct: 316 VPFLQKFAEPRNKKPSVLKLELKQIREQQDLLFRFMNFLKQEGAVHVLQFCLTVEEFNDR 375
Query: 128 ILAP 131
IL P
Sbjct: 376 ILRP 379
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 0.48
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 53 EEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKA 106
+++KL A E D+ + +SFIL A H+V +L +L+ + L ++ A
Sbjct: 110 KDQKLTADAKFESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHA 163
>gi|21264592 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
2 [Homo sapiens]
Length = 1704
Score = 31.6 bits (70), Expect = 0.48
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 74 TISFILEQAVYHNVKPAALQQQLENIHL-RQDKAEAFVNTWSSMGQETVEKFRQRI 128
T SFI++ ++Y N K + ++E+I + R+DK ++T S TVE+ Q +
Sbjct: 370 TNSFIIKSSIYDNRKEKISEDKVEDIWIPREDKNNFLIDTASESEYSTVEECFQSL 425
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 31.2 bits (69), Expect = 0.63
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 56 KLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSS 115
KL A E D+ + +SF+L H+V +L +L+ + L ++ A + +
Sbjct: 207 KLTADAKFESGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCY-- 264
Query: 116 MGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQA 158
E + Q+ L C L T W L ++A A+ P A
Sbjct: 265 ---EEKQSPLQKHLRVCSLRT--WSLAARVAEGT-AETVDPSA 301
>gi|170784854 PTPRF interacting protein, binding protein 2 (liprin
beta 2) [Homo sapiens]
Length = 876
Score = 31.2 bits (69), Expect = 0.63
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 24 AIDTGRFPRLLTRILQKLHLKAESSFSEEEE-EKLQAAFS---LEKQDLHLVLETISFIL 79
A+ RL +++ + L +ES ++E ++L+ L +D +E ++ +L
Sbjct: 248 ALKDAEIERLHSQLSRTAALHSESHTERDQEIQRLKMGMETLLLANEDKDRRIEELTGLL 307
Query: 80 EQAVYHNVKPAALQQQ---LENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLET 136
Q Y VK + Q + + +++ E + W++ ++ E F+Q + C T
Sbjct: 308 NQ--YRKVKEIVMVTQGPSERTLSINEEEPEGGFSKWNATNKDPEELFKQEMPPRCSSPT 365
Query: 137 VG 138
VG
Sbjct: 366 VG 367
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 31.2 bits (69), Expect = 0.63
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 36 RILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQ 95
RIL + +K ES + EE+K + L DL + + + + VY K L+ +
Sbjct: 171 RILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAE 230
Query: 96 LENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKS 155
+ + ++ +EA V E ++ + R LA QA ++S
Sbjct: 231 VAELKAEKENSEAQV--------ENAQRIQVRQLA-----------------EMQATVRS 265
Query: 156 PQAVLQLGVNNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSLT 202
+A Q N ++ LEK L S + F NKL + ++++L+
Sbjct: 266 LEAEKQSA--NLRAERLEKELQSSSEQNTF-LINKLHKAEREINTLS 309
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 31.2 bits (69), Expect = 0.63
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 36 RILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQ 95
RIL + +K ES + EE+K + L DL + + + + VY K L+ +
Sbjct: 171 RILDEGKIKYESEIARLEEDKEELRNQLLNVDLTKDSKRVEQLAREKVYLCQKLKGLEAE 230
Query: 96 LENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKS 155
+ + ++ +EA V E ++ + R LA QA ++S
Sbjct: 231 VAELKAEKENSEAQV--------ENAQRIQVRQLA-----------------EMQATVRS 265
Query: 156 PQAVLQLGVNNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSLT 202
+A Q N ++ LEK L S + F NKL + ++++L+
Sbjct: 266 LEAEKQSA--NLRAERLEKELQSSSEQNTF-LINKLHKAEREINTLS 309
>gi|163659918 sacsin [Homo sapiens]
Length = 4579
Score = 30.8 bits (68), Expect = 0.82
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 15/58 (25%)
Query: 34 LTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAA 91
++ ++QK++LK++ SE+E KQ+LHL+L I ++ Y N PA+
Sbjct: 1332 ISMVIQKIYLKSDQDLSEQE----------SKQNLHLMLNIIRWL-----YSNQIPAS 1374
>gi|40807469 TRAF interacting protein [Homo sapiens]
Length = 469
Score = 30.8 bits (68), Expect = 0.82
Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 46 ESSFSEEEEEKLQAAFSL---EKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHL- 101
++ F + E + ++A S EK+D ++++T+ LE+ N +LQQ L +
Sbjct: 75 DAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEE---RNATVVSLQQALGKAEML 131
Query: 102 -----RQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSP 156
+Q K + QE + R ++ ++E + ++ +
Sbjct: 132 CSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEMIRDMGVGQ 191
Query: 157 QAVLQLGV----------NNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQLD 199
AV QL V N ++++ + + K+LF +KL+T+ ++LD
Sbjct: 192 SAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSELD 244
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.8 bits (68), Expect = 0.82
Identities = 38/177 (21%), Positives = 79/177 (44%), Gaps = 20/177 (11%)
Query: 32 RLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISF-ILEQAVYHNVKPA 90
++L++ LQ++ + + + E E+ ++ LEK +L + +SF L++ ++H
Sbjct: 290 QILSQQLQQMEAEHNTLRNTVETEREESKILLEKMELEVAERKLSFHNLQEEMHH----- 344
Query: 91 ALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQ 150
L +Q E Q + E + +S++ Q+ + ++ L+ G +L SA
Sbjct: 345 -LLEQFEQAGQAQAELE---SRYSALEQKHKAEMEEKTSHILSLQKTGQEL-----QSAC 395
Query: 151 AKLKSPQAVLQLGVNNEDSKSLEKV-----LVEFSHKELFDFYNKLETIQAQLDSLT 202
LK + L N + +S + + ++ KE+ F N+L Q + S T
Sbjct: 396 DALKDQNSKLLQDKNEQAVQSAQTIQQLEDQLQQKSKEISQFLNRLPLQQHETASQT 452
Score = 28.9 bits (63), Expect = 3.1
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 45 AESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQD 104
A+ S S E + L+ A S + D +L+ + + +Q + N + L + QD
Sbjct: 2867 AQPSTSPAEVQSLKKAMSSLQNDRDRLLKELKNLQQQYLQINQEITELHPLKAQLQEYQD 2926
Query: 105 KAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLN 142
K +AF + QE + Q L ++E W+++
Sbjct: 2927 KTKAFQIMQEELRQENLS--WQHELHQLRMEKSSWEIH 2962
>gi|219804014 Fc fragment of IgG, high affinity Ib, receptor (CD64)
isoform b [Homo sapiens]
Length = 188
Score = 30.0 bits (66), Expect = 1.4
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 9 LRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQ 58
+R+ KK +L ++D+G ++++ + + HL+ E E++EE+LQ
Sbjct: 127 IRKELKRKKKWNLEISLDSGHEKKVISSLQEDRHLEEELKCQEQKEEQLQ 176
>gi|63055063 Fc fragment of IgG, high affinity Ib, receptor (CD64)
isoform a [Homo sapiens]
Length = 280
Score = 30.0 bits (66), Expect = 1.4
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 9 LRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQ 58
+R+ KK +L ++D+G ++++ + + HL+ E E++EE+LQ
Sbjct: 219 IRKELKRKKKWNLEISLDSGHEKKVISSLQEDRHLEEELKCQEQKEEQLQ 268
>gi|109255236 centrosomal protein 63 isoform d [Homo sapiens]
Length = 475
Score = 30.0 bits (66), Expect = 1.4
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 37 ILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQA------VYHNVKPA 90
+LQ+ K E E EKL A EK++L L++ ++ +A + VK
Sbjct: 244 VLQEQQQKEEKL---RESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKAT 300
Query: 91 ALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQ 150
Q +E I L E+ T + QE +EK+ +L AH+ +
Sbjct: 301 NTQHAVEAISL-----ESVSATCKQLSQELMEKYE--------------ELKRMEAHNNE 341
Query: 151 AKLKSPQAVLQLGVNNED-SKSLEKVLVEFSH 181
K + + Q+ + S +LE + +E SH
Sbjct: 342 YKAEIKKLKEQILQGEQSYSSALEGMKMEISH 373
>gi|109255226 centrosomal protein 63 isoform c [Homo sapiens]
Length = 495
Score = 30.0 bits (66), Expect = 1.4
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 37 ILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQA------VYHNVKPA 90
+LQ+ K E E EKL A EK++L L++ ++ +A + VK
Sbjct: 244 VLQEQQQKEEKL---RESEKLLEALQEEKRELKAALQSQENLIHEARIQKEKLQEKVKAT 300
Query: 91 ALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQ 150
Q +E I L E+ T + QE +EK+ +L AH+ +
Sbjct: 301 NTQHAVEAISL-----ESVSATCKQLSQELMEKYE--------------ELKRMEAHNNE 341
Query: 151 AKLKSPQAVLQLGVNNED-SKSLEKVLVEFSH 181
K + + Q+ + S +LE + +E SH
Sbjct: 342 YKAEIKKLKEQILQGEQSYSSALEGMKMEISH 373
>gi|10835133 Fc fragment of IgG, high affinity Ia, receptor (CD64)
[Homo sapiens]
Length = 374
Score = 29.6 bits (65), Expect = 1.8
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 9 LRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQ 58
+R+ KK L ++D+G ++++ + + HL+ E E++EE+LQ
Sbjct: 313 IRKELKRKKKWDLEISLDSGHEKKVISSLQEDRHLEEELKCQEQKEEQLQ 362
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 56 KLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKA 106
KL A E D+ + +SFIL A H+V +L +L+ + L ++ A
Sbjct: 98 KLTADAKFESGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHA 148
>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
Length = 156
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 110 VNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNE-- 167
V+TW + Q +I P +L + W+++++ + + +++ P +LQ+ + +
Sbjct: 64 VSTWRTEAQAN------QISLP-RLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPS 116
Query: 168 ---DSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSL 201
D S+ V VE S + L + L I+ QL ++
Sbjct: 117 LCGDKPSISAVTVELSKETLDTMLDGLGRIRDQLSAV 153
>gi|122937396 coiled-coil domain containing 150 [Homo sapiens]
Length = 1101
Score = 29.6 bits (65), Expect = 1.8
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 53 EEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNT 112
E E LQ A + ++D + ++ L+ + K +Q+QLE+ L + E F +
Sbjct: 753 EIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDR 812
Query: 113 WSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSL 172
+ + E +RI A K + ++A A+LK D +
Sbjct: 813 MTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKKAL----------DEANF 862
Query: 173 EKVLVEFSHKELFDFYNKLETI 194
V V +++EL +LE I
Sbjct: 863 RSVEVSRTNRELRQKLAELEKI 884
>gi|239756399 PREDICTED: similar to hCG32587 [Homo sapiens]
Length = 306
Score = 29.3 bits (64), Expect = 2.4
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 39 QKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLEN 98
+ LHL+ + E E++LQA E + L LE+++ L+ V N + L +Q +
Sbjct: 107 EPLHLEPPAG-PLEVEQQLQA----EIKHLRKTLESLAGQLQAQVEANEGSSHLNRQQDE 161
Query: 99 IHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKL-----ETVGWQLNLQMAHSAQAKL 153
LR+ KAE + + G+ +V+K R I E + +Q +A +L
Sbjct: 162 -RLREWKAELWEEQGET-GRSSVQKDRTTISHALSQNHQLEEQLAKVKQMQQQVAAYQQL 219
Query: 154 KSPQAVL--------QLGVNNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSL 201
S + L QL + ++ K + E +H+EL + +LE Q L
Sbjct: 220 TSEKEALHRQLLLQTQLMDQLQQQEAQGKAVAEMAHQELKETQERLEATSQQNQQL 275
>gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo
sapiens]
Length = 616
Score = 29.3 bits (64), Expect = 2.4
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 11 ESPSMKKAV--SLINAIDTGRFPRLLTRILQK-LHLKAESSFSEEEEEKLQAAFSLEKQD 67
E P K V SL + I G +L +R L LH AES F EE+ EK LE+
Sbjct: 161 EQPEAPKLVLQSLFSLI-RGEVEQLDSRALPLCLHQIAESYFQEEDYEKAMKFIQLERLY 219
Query: 68 LHLVLETISFILEQ 81
+L +S I EQ
Sbjct: 220 HEQLLANLSAIQEQ 233
>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 2.4
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 11 ESPSMKKAV--SLINAIDTGRFPRLLTRILQK-LHLKAESSFSEEEEEKLQAAFSLEKQD 67
E P K V SL + I G +L +R L LH AES F EE+ EK LE+
Sbjct: 161 EQPEAPKLVLQSLFSLI-RGEVEQLDSRALPLCLHQIAESYFQEEDYEKAMKFIQLERLY 219
Query: 68 LHLVLETISFILEQ 81
+L +S I EQ
Sbjct: 220 HEQLLANLSAIQEQ 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,569,341
Number of Sequences: 37866
Number of extensions: 255892
Number of successful extensions: 1093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 72
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.