Guide to the Human Genome
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Name: SACS Sequence: fasta or formatted (4579aa) NCBI GI: 163659918
Description:

sacsin

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2        236           2
 C cysteine            2.2        100           2
 D aspartate           5.7        263           3
 E glutamate           6.6        304           3
 F phenylalanine       5.0        229           2
 G glycine             4.3        197           3
 H histidine           2.4        111           2
 I isoleucine          6.1        279           3
 K lysine              7.7        354           3
 L leucine            11.9        543           3
 M methionine          1.7         80           1
 N asparagine          4.5        208           2
 P proline             5.1        235           2
 Q glutamine           4.1        187           3
 R arginine            4.2        191           2
 S serine              7.9        360           4
 T threonine           4.9        224           2
 V valine              6.2        285           2
 W tryptophan          1.3         59           1
 Y tyrosine            2.9        134           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sacsin 
DNAJC21               0.002   DnaJ homology subfamily A member 5 isoform 1 
DNAJC21               0.002   DnaJ homology subfamily A member 5 isoform 2 
DNAJB6                0.002   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform ...
DNAJB6                0.002   DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b...
DNAJB3                0.002   DnaJ (Hsp40) homolog, subfamily B, member 3 
DNAJB8                0.002   DnaJ homolog, subfamily B, member 8 
DNAJB7                0.002   DnaJ (Hsp40) homolog, subfamily B, member 7 
DNAJB2                0.002   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
DNAJB2                0.002   DnaJ (Hsp40) homolog, subfamily B, member 2 isoform ...
DNAJB5                0.002   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.002   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform...
DNAJB5                0.002   DnaJ (Hsp40) homolog, subfamily B, member 5 isoform ...
DNAJA4                0.001   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
DNAJC5                0.001   DnaJ (Hsp40) homolog, subfamily C, member 5 
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent re...
DNAJA4                0.001   DnaJ (Hsp40) homolog, subfamily A, member 4 isoform...
SETD1A                0.001   SET domain containing 1A 
DNAJC5B               0.001   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
DST                   0.001   dystonin isoform 4 
DST                   0.001   dystonin isoform 3 
DST                   0.001   dystonin isoform 2 
DST                   0.001   dystonin isoform 1 
DST                   0.001   dystonin isoform 1eA precursor 
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.001   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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