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Search of human proteins with 7706625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706625 retinoic acid receptor, beta isoform 2 [Homo
sapiens]
(336 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens] 676 0.0
gi|7706625 retinoic acid receptor, beta isoform 2 [Homo sapiens] 676 0.0
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 560 e-160
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 560 e-160
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 560 e-160
gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens] 536 e-152
gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens] 536 e-152
gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens] 479 e-135
gi|40806160 thyroid hormone receptor, alpha isoform 1 [Homo sapi... 202 4e-52
gi|189491771 thyroid hormone receptor, beta [Homo sapiens] 189 4e-48
gi|189491769 thyroid hormone receptor, beta [Homo sapiens] 189 4e-48
gi|40806162 thyroid hormone receptor, beta [Homo sapiens] 189 4e-48
gi|20127452 thyroid hormone receptor, alpha isoform 2 [Homo sapi... 176 2e-44
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 166 4e-41
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 153 2e-37
gi|194294519 nuclear receptor subfamily 1, group H, member 3 iso... 151 9e-37
gi|194294517 nuclear receptor subfamily 1, group H, member 3 iso... 151 9e-37
gi|11415052 retinoid X receptor, beta [Homo sapiens] 147 2e-35
gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Hom... 145 5e-35
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 144 8e-35
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 144 8e-35
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo... 144 1e-34
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 135 7e-32
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 135 7e-32
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 135 7e-32
gi|224177493 nuclear receptor subfamily 1, group D, member 2 iso... 129 3e-30
gi|224177491 nuclear receptor subfamily 1, group D, member 2 iso... 129 3e-30
gi|50348666 peroxisome proliferative activated receptor, alpha [... 129 4e-30
gi|7549811 peroxisome proliferative activated receptor, alpha [H... 129 4e-30
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi... 125 4e-29
>gi|14916494 retinoic acid receptor, beta isoform 1 [Homo sapiens]
Length = 448
Score = 676 bits (1745), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE
Sbjct: 113 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 172
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI
Sbjct: 173 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 232
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 233 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 292
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL
Sbjct: 293 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 352
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
Sbjct: 353 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 412
Query: 301 HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ 336
HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ
Sbjct: 413 HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ 448
>gi|7706625 retinoic acid receptor, beta isoform 2 [Homo sapiens]
Length = 336
Score = 676 bits (1745), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE
Sbjct: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI
Sbjct: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL
Sbjct: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
Sbjct: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
Query: 301 HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ 336
HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ
Sbjct: 301 HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ 336
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 560 bits (1444), Expect = e-160
Identities = 276/343 (80%), Positives = 302/343 (88%), Gaps = 10/343 (2%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
M+YTCHRDKNC+INKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE K EC+ESY
Sbjct: 120 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYT 179
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
+T E+ +L EK+RKAHQETFP+LCQLGKYTTN+S++ RV LD+ LWDKFSEL+TKCIIK
Sbjct: 180 LTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKT 239
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAK+LPGFT LTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 240 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 299
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVF FANQLLPLEMDD ETGLLSAICLICGDRQDLE+P +VD LQEPLLEAL
Sbjct: 300 AGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEAL 359
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
K+Y+RKRRPS+PHMFPK+LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
Sbjct: 360 KVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 419
Query: 301 HEPLTPSSSGNTAEH----------SPSISPSSVENSGVSQSP 333
+ L+ G + SPS+SPSS +S + SP
Sbjct: 420 LDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 462
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 560 bits (1444), Expect = e-160
Identities = 276/343 (80%), Positives = 302/343 (88%), Gaps = 10/343 (2%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
M+YTCHRDKNC+INKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE K EC+ESY
Sbjct: 115 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYT 174
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
+T E+ +L EK+RKAHQETFP+LCQLGKYTTN+S++ RV LD+ LWDKFSEL+TKCIIK
Sbjct: 175 LTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKT 234
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAK+LPGFT LTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 235 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 294
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVF FANQLLPLEMDD ETGLLSAICLICGDRQDLE+P +VD LQEPLLEAL
Sbjct: 295 AGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEAL 354
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
K+Y+RKRRPS+PHMFPK+LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
Sbjct: 355 KVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 414
Query: 301 HEPLTPSSSGNTAEH----------SPSISPSSVENSGVSQSP 333
+ L+ G + SPS+SPSS +S + SP
Sbjct: 415 LDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 457
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 560 bits (1444), Expect = e-160
Identities = 276/343 (80%), Positives = 302/343 (88%), Gaps = 10/343 (2%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
M+YTCHRDKNC+INKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE K EC+ESY
Sbjct: 120 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYT 179
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
+T E+ +L EK+RKAHQETFP+LCQLGKYTTN+S++ RV LD+ LWDKFSEL+TKCIIK
Sbjct: 180 LTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKT 239
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAK+LPGFT LTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 240 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 299
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVF FANQLLPLEMDD ETGLLSAICLICGDRQDLE+P +VD LQEPLLEAL
Sbjct: 300 AGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEAL 359
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
K+Y+RKRRPS+PHMFPK+LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
Sbjct: 360 KVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 419
Query: 301 HEPLTPSSSGNTAEH----------SPSISPSSVENSGVSQSP 333
+ L+ G + SPS+SPSS +S + SP
Sbjct: 420 LDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 462
>gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]
Length = 443
Score = 536 bits (1381), Expect = e-152
Identities = 258/302 (85%), Positives = 281/302 (93%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
M+YTCHRDKNC+INKVTRNRCQYCRLQKCFEVGMSKE+VRNDRNKKKKE ++ +SYE
Sbjct: 111 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYE 170
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
++ +L++L K+ KAHQETFPSLCQLGKYTTNSSADHRV+LDLGLWDKFSELATKCIIKI
Sbjct: 171 LSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKI 230
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAKRLPGFTGL+IADQITLLKAACLDIL+LRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 231 VEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHN 290
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVF FA QLLPLEMDDTETGLLSAICLICGDR DLEEP KVDKLQEPLLEAL
Sbjct: 291 AGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEAL 350
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
++Y R+RRPS+P+MFP++LMKITDLR IS KGAER ITLKMEIPG MPPLI+EMLEN E
Sbjct: 351 RLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEM 410
Query: 301 HE 302
E
Sbjct: 411 FE 412
>gi|4506423 retinoic acid receptor, gamma isoform 1 [Homo sapiens]
Length = 454
Score = 536 bits (1381), Expect = e-152
Identities = 258/302 (85%), Positives = 281/302 (93%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
M+YTCHRDKNC+INKVTRNRCQYCRLQKCFEVGMSKE+VRNDRNKKKKE ++ +SYE
Sbjct: 122 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEVKEEGSPDSYE 181
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
++ +L++L K+ KAHQETFPSLCQLGKYTTNSSADHRV+LDLGLWDKFSELATKCIIKI
Sbjct: 182 LSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKI 241
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VEFAKRLPGFTGL+IADQITLLKAACLDIL+LRICTRYTPEQDTMTFSDGLTLNRTQMHN
Sbjct: 242 VEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHN 301
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AGFGPLTDLVF FA QLLPLEMDDTETGLLSAICLICGDR DLEEP KVDKLQEPLLEAL
Sbjct: 302 AGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEAL 361
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 300
++Y R+RRPS+P+MFP++LMKITDLR IS KGAER ITLKMEIPG MPPLI+EMLEN E
Sbjct: 362 RLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEM 421
Query: 301 HE 302
E
Sbjct: 422 FE 423
>gi|223718070 retinoic acid receptor, alpha isoform 4 [Homo sapiens]
Length = 365
Score = 479 bits (1234), Expect = e-135
Identities = 241/309 (77%), Positives = 266/309 (86%), Gaps = 10/309 (3%)
Query: 35 SKESVRNDRNKKKKETSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSS 94
S +VRNDRNKKKKE K EC+ESY +T E+ +L EK+RKAHQETFP+LCQLGKYTTN+S
Sbjct: 57 SPATVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNS 116
Query: 95 ADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRI 154
++ RV LD+ LWDKFSEL+TKCIIK VEFAK+LPGFT LTIADQITLLKAACLDILILRI
Sbjct: 117 SEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRI 176
Query: 155 CTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAIC 214
CTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF FANQLLPLEMDD ETGLLSAIC
Sbjct: 177 CTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAIC 236
Query: 215 LICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAE 274
LICGDRQDLE+P +VD LQEPLLEALK+Y+RKRRPS+PHMFPK+LMKITDLRSISAKGAE
Sbjct: 237 LICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAE 296
Query: 275 RVITLKMEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEH----------SPSISPSSV 324
RVITLKMEIPGSMPPLIQEMLENSEG + L+ G + SPS+SPSS
Sbjct: 297 RVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSN 356
Query: 325 ENSGVSQSP 333
+S + SP
Sbjct: 357 RSSPATHSP 365
>gi|40806160 thyroid hormone receptor, alpha isoform 1 [Homo
sapiens]
Length = 410
Score = 202 bits (513), Expect = 4e-52
Identities = 116/321 (36%), Positives = 174/321 (54%), Gaps = 24/321 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND-------------RNKKKKE 49
Y+C D CVI+K+TRN+CQ CR +KC VGM+ + V +D R +++KE
Sbjct: 89 YSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE 148
Query: 50 TSKQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNSSADHRV------- 99
+ + E T E DL +AH+ T Q K+ + +
Sbjct: 149 EMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGD 208
Query: 100 RLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 159
++DL + +F+++ T I ++V+FAK+LP F+ L DQI LLK C++I+ LR RY
Sbjct: 209 KVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYD 268
Query: 160 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 219
PE DT+T S + + R Q+ N G G ++D +F L +DDTE LL A+ L+ D
Sbjct: 269 PESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTD 328
Query: 220 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITL 279
R L K++K QE L A + Y+ R+ + PH +PK+LMK+TDLR I A A R + +
Sbjct: 329 RSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHM 388
Query: 280 KMEIPGSM-PPLIQEMLENSE 299
K+E P + PPL E+ E+ E
Sbjct: 389 KVECPTELFPPLFLEVFEDQE 409
>gi|189491771 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 189 bits (479), Expect = 4e-48
Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 24/319 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND-------------RNKKKKE 49
Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D R K+++E
Sbjct: 143 YSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 202
Query: 50 TSKQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS-------SADHRV 99
++ E T E +L + + +AH T Q K+ +A
Sbjct: 203 ELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG 262
Query: 100 RLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 159
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ LR RY
Sbjct: 263 KVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 322
Query: 160 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 219
PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L+ D
Sbjct: 323 PESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 382
Query: 220 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITL 279
R L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A A R + +
Sbjct: 383 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHM 442
Query: 280 KMEIPGSM-PPLIQEMLEN 297
K+E P + PPL E+ E+
Sbjct: 443 KVECPTELFPPLFLEVFED 461
>gi|189491769 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 189 bits (479), Expect = 4e-48
Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 24/319 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND-------------RNKKKKE 49
Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D R K+++E
Sbjct: 143 YSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 202
Query: 50 TSKQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS-------SADHRV 99
++ E T E +L + + +AH T Q K+ +A
Sbjct: 203 ELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG 262
Query: 100 RLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 159
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ LR RY
Sbjct: 263 KVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 322
Query: 160 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 219
PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L+ D
Sbjct: 323 PESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 382
Query: 220 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITL 279
R L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A A R + +
Sbjct: 383 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHM 442
Query: 280 KMEIPGSM-PPLIQEMLEN 297
K+E P + PPL E+ E+
Sbjct: 443 KVECPTELFPPLFLEVFED 461
>gi|40806162 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 189 bits (479), Expect = 4e-48
Identities = 111/319 (34%), Positives = 170/319 (53%), Gaps = 24/319 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND-------------RNKKKKE 49
Y+C + CVI+KVTRN+CQ CR +KC VGM+ + V +D R K+++E
Sbjct: 143 YSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 202
Query: 50 TSKQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNS-------SADHRV 99
++ E T E +L + + +AH T Q K+ +A
Sbjct: 203 ELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGG 262
Query: 100 RLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 159
++DL + F+++ T I ++V+FAK+LP F L DQI LLK C++I+ LR RY
Sbjct: 263 KVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYD 322
Query: 160 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 219
PE +T+T + + + R Q+ N G G ++D +F L +DDTE LL A+ L+ D
Sbjct: 323 PESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSD 382
Query: 220 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITL 279
R L +++K Q+ L A + YI R+ H +PK+LMK+TDLR I A A R + +
Sbjct: 383 RPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHM 442
Query: 280 KMEIPGSM-PPLIQEMLEN 297
K+E P + PPL E+ E+
Sbjct: 443 KVECPTELFPPLFLEVFED 461
>gi|20127452 thyroid hormone receptor, alpha isoform 2 [Homo
sapiens]
Length = 490
Score = 176 bits (447), Expect = 2e-44
Identities = 104/295 (35%), Positives = 158/295 (53%), Gaps = 24/295 (8%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND-------------RNKKKKE 49
Y+C D CVI+K+TRN+CQ CR +KC VGM+ + V +D R +++KE
Sbjct: 89 YSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE 148
Query: 50 TSKQECTESYEMTAELDDLTEKIRKAHQETFPSLC---QLGKYTTNSSADHRV------- 99
+ + E T E DL +AH+ T Q K+ + +
Sbjct: 149 EMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGD 208
Query: 100 RLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 159
++DL + +F+++ T I ++V+FAK+LP F+ L DQI LLK C++I+ LR RY
Sbjct: 209 KVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYD 268
Query: 160 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGD 219
PE DT+T S + + R Q+ N G G ++D +F L +DDTE LL A+ L+ D
Sbjct: 269 PESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTD 328
Query: 220 RQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLR-SISAKGA 273
R L K++K QE L A + Y+ R+ + PH +PK+LMK +++ SI KGA
Sbjct: 329 RSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKEREVQSSILYKGA 383
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 166 bits (419), Expect = 4e-41
Identities = 99/298 (33%), Positives = 160/298 (53%), Gaps = 13/298 (4%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK-KKKETSKQECTESY 59
+IYTC +K+C+I+K RNRCQYCR QKC +GM +E+V+ +R + +++ S+ EC S
Sbjct: 171 LIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECATS- 229
Query: 60 EMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIK 119
D E+I +A P G +S + V A K +
Sbjct: 230 ---GHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPV-------TNICHAADKQLFT 279
Query: 120 IVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 179
+VE+AKR+P F+ LT+ DQ+ LL+A ++LI R QD + + GL ++R+ H
Sbjct: 280 LVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAH 339
Query: 180 NAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLE 238
+AG G + D V T +++ ++MD +E G L AI L D + L P++V+ L+E +
Sbjct: 340 SAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYA 399
Query: 239 ALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLE 296
L+ Y +++ P +P F K+L+++ LRSI K E + K+ + + EMLE
Sbjct: 400 TLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 457
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 153 bits (387), Expect = 2e-37
Identities = 98/301 (32%), Positives = 158/301 (52%), Gaps = 16/301 (5%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK-KKKETSKQECTESY 59
+ YTC +K+C+I+K RNRCQYCR QKC +GM +E+V+ +R + K + ++ E T S
Sbjct: 167 LTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSS- 225
Query: 60 EMTAELDDLTEKIRKAHQETFP---SLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKC 116
A D E+I +A P + + SS + V + A K
Sbjct: 226 ---ANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPV-------TNICQAADKQ 275
Query: 117 IIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRT 176
+ +VE+AKR+P F+ L + DQ+ LL+A ++LI R +D + + GL ++R
Sbjct: 276 LFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 335
Query: 177 QMHNAGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEP 235
H+AG G + D V T +++ ++MD TE G L AI L D + L P +V+ L+E
Sbjct: 336 SAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREK 395
Query: 236 LLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML 295
+ +L+ Y + + P +P F K+L+++ LRSI K E + K+ + + EML
Sbjct: 396 VYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 455
Query: 296 E 296
E
Sbjct: 456 E 456
>gi|194294519 nuclear receptor subfamily 1, group H, member 3
isoform c [Homo sapiens]
Length = 402
Score = 151 bits (381), Expect = 9e-37
Identities = 92/318 (28%), Positives = 167/318 (52%), Gaps = 23/318 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESY--- 59
Y CH +C ++ R +CQ CRL+KC + GM +E V ++ + K+ +QE +++
Sbjct: 87 YICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATS 146
Query: 60 -------------EMTAELDDLTEKIRKAHQE----TFPSLCQLGKYTTNSSADHRVRLD 102
+++ E + EK+ A Q+ +F ++ + + H
Sbjct: 147 LPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPM-APDPHSREAR 205
Query: 103 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 162
+ F+ELA + +IV+FAK+LPGF L+ DQI LLK + +++++L RY P
Sbjct: 206 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGS 265
Query: 163 DTMTFSDGLTLNRTQMHNAGFG-PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ 221
+++TF + NR AG + +F F+ + L+++D E LL AI + DR
Sbjct: 266 ESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRP 325
Query: 222 DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
++++ +V++LQ +EAL Y+ P MFP++LMK+ LR++S+ +E+V L++
Sbjct: 326 NVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 385
Query: 282 EIPGSMPPLIQEMLENSE 299
+ +PPL+ E+ + E
Sbjct: 386 Q-DKKLPPLLSEIWDVHE 402
>gi|194294517 nuclear receptor subfamily 1, group H, member 3
isoform a [Homo sapiens]
Length = 447
Score = 151 bits (381), Expect = 9e-37
Identities = 92/318 (28%), Positives = 167/318 (52%), Gaps = 23/318 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESY--- 59
Y CH +C ++ R +CQ CRL+KC + GM +E V ++ + K+ +QE +++
Sbjct: 132 YICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAHATS 191
Query: 60 -------------EMTAELDDLTEKIRKAHQE----TFPSLCQLGKYTTNSSADHRVRLD 102
+++ E + EK+ A Q+ +F ++ + + H
Sbjct: 192 LPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPM-APDPHSREAR 250
Query: 103 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ 162
+ F+ELA + +IV+FAK+LPGF L+ DQI LLK + +++++L RY P
Sbjct: 251 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGS 310
Query: 163 DTMTFSDGLTLNRTQMHNAGFG-PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ 221
+++TF + NR AG + +F F+ + L+++D E LL AI + DR
Sbjct: 311 ESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRP 370
Query: 222 DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
++++ +V++LQ +EAL Y+ P MFP++LMK+ LR++S+ +E+V L++
Sbjct: 371 NVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRL 430
Query: 282 EIPGSMPPLIQEMLENSE 299
+ +PPL+ E+ + E
Sbjct: 431 Q-DKKLPPLLSEIWDVHE 447
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 147 bits (370), Expect = 2e-35
Identities = 89/297 (29%), Positives = 153/297 (51%), Gaps = 7/297 (2%)
Query: 1 MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYE 60
+ Y+C +K+C ++K RNRCQYCR QKC GM +E+V+ +R + K + E
Sbjct: 237 LTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAP 296
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI 120
+D + E Q++ + G + S+ + ++ + A K + +
Sbjct: 297 EEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNI------CQAADKQLFTL 350
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
VE+AKR+P F+ L + DQ+ LL+A ++LI R +D + + GL ++R H+
Sbjct: 351 VEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHS 410
Query: 181 AGFGPLTDLVFT-FANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEA 239
AG G + D V T +++ + MD TE G L AI L D + L P++V+ L+E + +
Sbjct: 411 AGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYAS 470
Query: 240 LKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLE 296
L+ Y +++ P + F K+L+++ LRSI K E + K+ + + EMLE
Sbjct: 471 LETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE 527
>gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Homo
sapiens]
Length = 461
Score = 145 bits (366), Expect = 5e-35
Identities = 97/341 (28%), Positives = 169/341 (49%), Gaps = 46/341 (13%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGM------SKESVRNDRNKKKKETSKQECT 56
Y C C ++ R +CQ CRL+KC E GM S+E +R + +K+++ Q +
Sbjct: 123 YACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQS 182
Query: 57 ES---------------------------------YEMTAELDDLTEKIRKA----HQET 79
+S ++TA + + +++ A ++ +
Sbjct: 183 QSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRS 242
Query: 80 FPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQI 139
F ++ + + R + F+ELA + +IV+FAK++PGF L DQI
Sbjct: 243 FSDQPKVTPWPLGADPQSRDARQQR-FAHFTELAIISVQEIVDFAKQVPGFLQLGREDQI 301
Query: 140 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG-PLTDLVFTFANQLL 198
LLKA+ ++I++L RY E + +TF T ++ H AG + +F F+ +
Sbjct: 302 ALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMR 361
Query: 199 PLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKI 258
L +DD E LL AI + DR +++EP +V+ LQ+P +EAL Y R +RP FP++
Sbjct: 362 RLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRM 421
Query: 259 LMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 299
LMK+ LR++S+ +E+V L+++ +PPL+ E+ + E
Sbjct: 422 LMKLVSLRTLSSVHSEQVFALRLQ-DKKLPPLLSEIWDVHE 461
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 144 bits (364), Expect = 8e-35
Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 7/295 (2%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMT 62
Y C +K+C ++K RNRCQ+CR QKC VGM KE VR D K ++ +
Sbjct: 301 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR--GRLPSKPKQPPD 358
Query: 63 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSA-DHRVRLDLGLWDKFSELATKCIIKIV 121
A +L + +AH ++ PS +L H + D G +F +L + + I
Sbjct: 359 ASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIR 418
Query: 122 EFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 181
++A+++PGF L+ ADQ LL++A L++ ILR+ R P + + F GL L+R Q
Sbjct: 419 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR- 477
Query: 182 GFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALK 241
GFG D + F+ L L +D LSA+ LI DR L+EP +V++LQ + LK
Sbjct: 478 GFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLK 536
Query: 242 IYIR--KRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEM 294
++ P ++L K+ +LR++ +G +R+ LK+E PP+I ++
Sbjct: 537 EHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKI 591
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 144 bits (364), Expect = 8e-35
Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 7/295 (2%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMT 62
Y C +K+C ++K RNRCQ+CR QKC VGM KE VR D K ++ +
Sbjct: 301 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR--GRLPSKPKQPPD 358
Query: 63 AELDDLTEKIRKAHQETFPSLCQLGKYTTNSSA-DHRVRLDLGLWDKFSELATKCIIKIV 121
A +L + +AH ++ PS +L H + D G +F +L + + I
Sbjct: 359 ASPANLLTSLVRAHLDSGPSTAKLDYSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEVIR 418
Query: 122 EFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 181
++A+++PGF L+ ADQ LL++A L++ ILR+ R P + + F GL L+R Q
Sbjct: 419 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCAR- 477
Query: 182 GFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALK 241
GFG D + F+ L L +D LSA+ LI DR L+EP +V++LQ + LK
Sbjct: 478 GFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLK 536
Query: 242 IYIR--KRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEM 294
++ P ++L K+ +LR++ +G +R+ LK+E PP+I ++
Sbjct: 537 EHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKI 591
>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
sapiens]
Length = 598
Score = 144 bits (363), Expect = 1e-34
Identities = 88/297 (29%), Positives = 162/297 (54%), Gaps = 7/297 (2%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRND--RNKKKKETSKQECTESYE 60
Y C +KNC ++K RNRCQYCR QKC VGM KE VR D + ++ + SK + +
Sbjct: 297 YVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEPS 356
Query: 61 MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVR-LDLGLWDKFSELATKCIIK 119
+ L + +AH ++ P++ L ++ D+++ D +F +L T +
Sbjct: 357 PPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEI 416
Query: 120 IVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 179
I +A+++PGF L ADQ L ++A L++ +LR+ R P + + F +G+ L+R Q
Sbjct: 417 IRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCV 476
Query: 180 NAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEA 239
GFG D + F++ L + +D + ++A+ ++ +R L+EP +V++LQ ++
Sbjct: 477 R-GFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVT-ERHGLKEPKRVEELQNKIVNC 534
Query: 240 LKIYIRKRRP--SKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEM 294
LK ++ ++P+ K+L K+ +LR++ +G +R+ LK+E P +I ++
Sbjct: 535 LKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKL 591
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 135 bits (339), Expect = 7e-32
Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 24/305 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--------KKKETSKQE 54
Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K K K +QE
Sbjct: 337 YVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQE 396
Query: 55 CTESYEMTAELDDLTEKIRKAHQET-----FPSLCQLGKYTTNSSADHRVRLDLGLWDKF 109
++ + + + +R T + C + + A+H +F
Sbjct: 397 PSQPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDAEH--------VQQF 448
Query: 110 SELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSD 169
L T I +A+++PGFT L DQ L+++A L++ +LR+ R +D F +
Sbjct: 449 YNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCN 508
Query: 170 GLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKV 229
GL L+R Q GFG D + F+ L L +D LSA+ +I +R L+EP +V
Sbjct: 509 GLVLHRLQCLR-GFGEWLDSIKDFSLNLQSLNLDIQALACLSALSMIT-ERHGLKEPKRV 566
Query: 230 DKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPP 289
++L + +LK + K + +P K+L + +LR I G +R+ LK+E S P
Sbjct: 567 EELCNKITSSLKDHQSKGQALEP-TESKVLGALVELRKICTLGLQRIFYLKLEDLVSPPS 625
Query: 290 LIQEM 294
+I ++
Sbjct: 626 IIDKL 630
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 135 bits (339), Expect = 7e-32
Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 24/305 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--------KKKETSKQE 54
Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K K K +QE
Sbjct: 326 YVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQE 385
Query: 55 CTESYEMTAELDDLTEKIRKAHQET-----FPSLCQLGKYTTNSSADHRVRLDLGLWDKF 109
++ + + + +R T + C + + A+H +F
Sbjct: 386 PSQPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDAEH--------VQQF 437
Query: 110 SELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSD 169
L T I +A+++PGFT L DQ L+++A L++ +LR+ R +D F +
Sbjct: 438 YNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCN 497
Query: 170 GLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKV 229
GL L+R Q GFG D + F+ L L +D LSA+ +I +R L+EP +V
Sbjct: 498 GLVLHRLQCLR-GFGEWLDSIKDFSLNLQSLNLDIQALACLSALSMIT-ERHGLKEPKRV 555
Query: 230 DKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPP 289
++L + +LK + K + +P K+L + +LR I G +R+ LK+E S P
Sbjct: 556 EELCNKITSSLKDHQSKGQALEP-TESKVLGALVELRKICTLGLQRIFYLKLEDLVSPPS 614
Query: 290 LIQEM 294
+I ++
Sbjct: 615 IIDKL 619
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 135 bits (339), Expect = 7e-32
Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 24/305 (7%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK--------KKKETSKQE 54
Y C +KNC ++K RNRCQYCR QKC VGM KE VR D K K K +QE
Sbjct: 326 YVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQE 385
Query: 55 CTESYEMTAELDDLTEKIRKAHQET-----FPSLCQLGKYTTNSSADHRVRLDLGLWDKF 109
++ + + + +R T + C + + A+H +F
Sbjct: 386 PSQPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDAEH--------VQQF 437
Query: 110 SELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSD 169
L T I +A+++PGFT L DQ L+++A L++ +LR+ R +D F +
Sbjct: 438 YNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCN 497
Query: 170 GLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKV 229
GL L+R Q GFG D + F+ L L +D LSA+ +I +R L+EP +V
Sbjct: 498 GLVLHRLQCLR-GFGEWLDSIKDFSLNLQSLNLDIQALACLSALSMIT-ERHGLKEPKRV 555
Query: 230 DKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPP 289
++L + +LK + K + +P K+L + +LR I G +R+ LK+E S P
Sbjct: 556 EELCNKITSSLKDHQSKGQALEP-TESKVLGALVELRKICTLGLQRIFYLKLEDLVSPPS 614
Query: 290 LIQEM 294
+I ++
Sbjct: 615 IIDKL 619
>gi|224177493 nuclear receptor subfamily 1, group D, member 2
isoform 2 [Homo sapiens]
Length = 504
Score = 129 bits (325), Expect = 3e-30
Identities = 62/177 (35%), Positives = 108/177 (61%)
Query: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
+W++FS T + ++VEFAKR+PGF L+ DQ+ LLKA ++L++R + + ++ T
Sbjct: 326 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 385
Query: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 224
+TF G + +H+ G G L + +F F+ +L L++ D E L +A+ L+ DR +E
Sbjct: 386 VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIE 445
Query: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
V+ LQE L+ AL+ I K P++ +F K+L+K+ DLRS++ +E ++ K+
Sbjct: 446 NVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKV 502
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 5 CHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 49
C +++NC I ++ RNRCQ CR +KC VGMS+++VR R K+++
Sbjct: 65 CLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREK 109
>gi|224177491 nuclear receptor subfamily 1, group D, member 2
isoform 1 [Homo sapiens]
Length = 579
Score = 129 bits (325), Expect = 3e-30
Identities = 62/177 (35%), Positives = 108/177 (61%)
Query: 105 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDT 164
+W++FS T + ++VEFAKR+PGF L+ DQ+ LLKA ++L++R + + ++ T
Sbjct: 401 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT 460
Query: 165 MTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLE 224
+TF G + +H+ G G L + +F F+ +L L++ D E L +A+ L+ DR +E
Sbjct: 461 VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIE 520
Query: 225 EPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKM 281
V+ LQE L+ AL+ I K P++ +F K+L+K+ DLRS++ +E ++ K+
Sbjct: 521 NVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKV 577
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 5 CHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKE 49
C +++NC I ++ RNRCQ CR +KC VGMS+++VR R K+++
Sbjct: 140 CLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREK 184
>gi|50348666 peroxisome proliferative activated receptor, alpha
[Homo sapiens]
Length = 468
Score = 129 bits (324), Expect = 4e-30
Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 37/324 (11%)
Query: 8 DKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR----NKKKKETSKQECTESYE--M 61
D++C I K RN+CQYCR KC VGMS ++R R K K + C E
Sbjct: 140 DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSE 199
Query: 62 TAELDDLTEKIRKAHQETF------PSLCQLGKYTTNSS-----------ADHRVRLDL- 103
TA+L L ++I +A+ + F + GK + N A+ + L
Sbjct: 200 TADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLV 259
Query: 104 --GLWDKFSEL---------ATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 152
G+ +K +E+ + + + ++ EFAK +PGF L + DQ+TLLK + +
Sbjct: 260 ANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFA 319
Query: 153 RICTRYTPEQDTMTFSDG-LTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLS 211
+ + + + + +G +T + F + + F FA + LE+DD++ L
Sbjct: 320 MLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFV 379
Query: 212 AICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAK 271
A + CGDR L ++K+QE ++ L+++++ P +FPK+L K+ DLR + +
Sbjct: 380 AAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTE 439
Query: 272 GAERV-ITLKMEIPGSMPPLIQEM 294
A+ V I K E ++ PL+QE+
Sbjct: 440 HAQLVQIIKKTESDAALHPLLQEI 463
>gi|7549811 peroxisome proliferative activated receptor, alpha [Homo
sapiens]
Length = 468
Score = 129 bits (324), Expect = 4e-30
Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 37/324 (11%)
Query: 8 DKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDR----NKKKKETSKQECTESYE--M 61
D++C I K RN+CQYCR KC VGMS ++R R K K + C E
Sbjct: 140 DRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCEHDIEDSE 199
Query: 62 TAELDDLTEKIRKAHQETF------PSLCQLGKYTTNSS-----------ADHRVRLDL- 103
TA+L L ++I +A+ + F + GK + N A+ + L
Sbjct: 200 TADLKSLAKRIYEAYLKNFNMNKVKARVILSGKASNNPPFVIHDMETLCMAEKTLVAKLV 259
Query: 104 --GLWDKFSEL---------ATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILIL 152
G+ +K +E+ + + + ++ EFAK +PGF L + DQ+TLLK + +
Sbjct: 260 ANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFA 319
Query: 153 RICTRYTPEQDTMTFSDG-LTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLS 211
+ + + + + +G +T + F + + F FA + LE+DD++ L
Sbjct: 320 MLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFV 379
Query: 212 AICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAK 271
A + CGDR L ++K+QE ++ L+++++ P +FPK+L K+ DLR + +
Sbjct: 380 AAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTE 439
Query: 272 GAERV-ITLKMEIPGSMPPLIQEM 294
A+ V I K E ++ PL+QE+
Sbjct: 440 HAQLVQIIKKTESDAALHPLLQEI 463
>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 125 bits (315), Expect = 4e-29
Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 4/296 (1%)
Query: 3 YTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMT 62
Y+C C I K R CQ CR KC +VGM KE VR DR + ++ K+ E +
Sbjct: 139 YSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRIDA--ENS 196
Query: 63 AELD-DLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVR-LDLGLWDKFSELATKCIIKI 120
L+ L + +K + + L + D V D+ +LA + ++ I
Sbjct: 197 PYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVI 256
Query: 121 VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 180
+ +AK +PGF+ L++ADQ++LL++A ++ILIL + R +D + ++D ++ Q
Sbjct: 257 IGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKL 316
Query: 181 AGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL 240
AG L + + + ++++ E L AI L D +E+ V KLQ+ L EAL
Sbjct: 317 AGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEAL 376
Query: 241 KIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLE 296
+ Y + P K+LM + LR S K + +K+E M L EMLE
Sbjct: 377 QDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLE 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,937,341
Number of Sequences: 37866
Number of extensions: 574611
Number of successful extensions: 2877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2495
Number of HSP's gapped (non-prelim): 263
length of query: 336
length of database: 18,247,518
effective HSP length: 103
effective length of query: 233
effective length of database: 14,347,320
effective search space: 3342925560
effective search space used: 3342925560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.