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Search of human proteins with 7706326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens] 258 6e-70
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 49 8e-07
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 49 8e-07
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso... 49 8e-07
gi|148612890 serine-arginine repressor protein [Homo sapiens] 49 1e-06
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 47 3e-06
gi|9558733 transformer-2 alpha [Homo sapiens] 45 1e-05
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 45 2e-05
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 45 2e-05
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 44 2e-05
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 44 3e-05
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 44 4e-05
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 44 4e-05
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 43 5e-05
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 43 7e-05
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 42 9e-05
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 42 1e-04
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 42 1e-04
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 42 2e-04
gi|55956788 nucleolin [Homo sapiens] 41 2e-04
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 41 2e-04
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 41 2e-04
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 41 2e-04
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 41 2e-04
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 41 3e-04
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 41 3e-04
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 41 3e-04
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 41 3e-04
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform... 41 3e-04
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 41 3e-04
>gi|7706326 splicing factor 3B, 14 kDa subunit [Homo sapiens]
Length = 125
Score = 258 bits (660), Expect = 6e-70
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60
MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA 60
Query: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
Sbjct: 61 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN 120
Query: 121 TDPPK 125
TDPPK
Sbjct: 121 TDPPK 125
>gi|5730079 FUS interacting protein (serine-arginine rich) 1
isoform 1 [Homo sapiens]
Length = 183
Score = 49.3 bits (116), Expect = 8e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFDA 70
PP N L++RN+ +E++ FG+YGPI + V T RG AYV +ED+ DA
Sbjct: 7 PP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 71 KNACDHLSGFNVCNRYLVVLYYNANR 96
++A +L +C R + + + +R
Sbjct: 65 EDALHNLDRKWICGRQIEIQFAQGDR 90
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 49.3 bits (116), Expect = 8e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFDA 70
PP N L++RN+ +E++ FG+YGPI + V T RG AYV +ED+ DA
Sbjct: 7 PP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 71 KNACDHLSGFNVCNRYLVVLYYNANR 96
++A +L +C R + + + +R
Sbjct: 65 EDALHNLDRKWICGRQIEIQFAQGDR 90
>gi|16905517 FUS interacting protein (serine-arginine rich) 1
isoform 2 [Homo sapiens]
Length = 262
Score = 49.3 bits (116), Expect = 8e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFDA 70
PP N L++RN+ +E++ FG+YGPI + V T RG AYV +ED+ DA
Sbjct: 7 PP--NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 71 KNACDHLSGFNVCNRYLVVLYYNANR 96
++A +L +C R + + + +R
Sbjct: 65 EDALHNLDRKWICGRQIEIQFAQGDR 90
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 48.5 bits (114), Expect = 1e-06
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG---NTPETRGTAYVVYEDIFDA 70
PP N L+IRN+ E++ FG+YGPI + + T RG AYV +ED+ DA
Sbjct: 7 PP--NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 71 KNACDHLSGFNVCNRYLVVLYYNANR 96
++A +L+ VC R + + + +R
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDR 90
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 47.4 bits (111), Expect = 3e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 18 NRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
N +YI NL KI +E+ Y IF ++G I I V + + RG A+V+++++ A NA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 68
Query: 74 CDHLSGFNVCNRYLVVLY 91
+ GF ++ + + Y
Sbjct: 69 LRSMQGFPFYDKPMRIQY 86
Score = 31.6 bits (70), Expect = 0.16
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
PP N IL++ NLP + + +F ++ +++R+ P A+V +++ A A
Sbjct: 205 PP--NHILFLTNLPEETNELMLSMLFNQFPGFKEVRL--VPGRHDIAFVEFDNEVQAGAA 260
Query: 74 CDHLSGFNV 82
D L GF +
Sbjct: 261 RDALQGFKI 269
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 45.4 bits (106), Expect = 1e-05
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV---GNTPETRGTAYVVYEDIF 68
R P+ N L + L T ++ ++F +YGP+ + V T +RG A+V +E I
Sbjct: 112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171
Query: 69 DAKNACDHLSGFNVCNRYLVVLYYNANRA 97
D+K A + +G + R + V Y RA
Sbjct: 172 DSKEAMERANGMELDGRRIRVDYSITKRA 200
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 18 NRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
N +YI N+ KI EE+ Y +F ++G + I T + RG A+V+++++ + NA
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 74 CDHLSGFNVCNRYLVVLYYNANR-AFQKM-----DTKKKEEQLK 111
L GF + + + Y + KM D +KK+E+ K
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKK 109
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
PP N IL++ NLP + + +F ++ +++R+ P A+V +E+ A A
Sbjct: 148 PP--NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL--VPGRHDIAFVEFENDGQAGAA 203
Query: 74 CDHLSGFNVCNRYLVVLYY 92
D L GF + + + + Y
Sbjct: 204 RDALQGFKITPSHAMKITY 222
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 18 NRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
N +YI N+ KI EE+ Y +F ++G + I T + RG A+V+++++ + NA
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 74 CDHLSGFNVCNRYLVVLYYNANR-AFQKM-----DTKKKEEQLK 111
L GF + + + Y + KM D +KK+E+ K
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKK 109
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 73
PP N IL++ NLP + + +F ++ +++R+ P A+V +E+ A A
Sbjct: 148 PP--NYILFLNNLPEETNEMMLSMLFNQFPGFKEVRL--VPGRHDIAFVEFENDGQAGAA 203
Query: 74 CDHLSGFNVCNRYLVVLYY 92
D L GF + + + + Y
Sbjct: 204 RDALQGFKITPSHAMKITY 222
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 44.3 bits (103), Expect = 2e-05
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACD 75
R +++ N+PY+ T E++ DIF + GP+ R+ ET +G + Y+D A +A
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 76 HLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDP 123
+L+G R L V NA K + K +++ YG P
Sbjct: 76 NLNGREFSGRALRV--DNAASEKNKEELKSLGTGAPVIESPYGETISP 121
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 43.9 bits (102), Expect = 3e-05
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
+YI+N + E + D+FGK+GP ++V + +++G +V +E DA+ A D ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVCNRYLVVLYYNANRAFQKM----DTKKKEEQLK 111
G + + + V RA +K+ + K+K EQ+K
Sbjct: 253 GKELNGKQIYV-----GRAQKKVERQTELKRKFEQMK 284
Score = 34.7 bits (78), Expect = 0.019
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKNACDHL 77
LY+ +L +T +Y+ F GPI IRV TR G AYV ++ DA+ A D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 78 S 78
+
Sbjct: 73 N 73
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIR-VGNTPETRGTAYVVYEDIFDAKNACDHLSG 79
++I+NL I + +YD F +G I + V + ++G +V +E A+ A + ++G
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 80 FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTD 122
+ +R + V + + + + + +E + + +G + D
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 43.5 bits (101), Expect = 4e-05
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I LP+ T EE+ +I +G ++ +R+ + +G AYV YE+ A A +
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 862
Query: 79 GFNVCNRYLVVLYYN--ANRAFQKMDTKKKEEQLKLLKEKYG 118
G + + V N + +K +T+K LL + YG
Sbjct: 863 GMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYG 904
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 43.5 bits (101), Expect = 4e-05
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV---GNTPETRGTAYVVYEDIF 68
R P+ N L + L T ++ ++F KYGPI + + + +RG A+V +E++
Sbjct: 111 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 170
Query: 69 DAKNACDHLSGFNVCNRYLVV 89
DAK A + +G + R + V
Sbjct: 171 DAKEAKERANGMELDGRRIRV 191
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 43.1 bits (100), Expect = 5e-05
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
+Y++NLP + + + D+F ++G + ++V N+ +R +V +E +A+ A H++
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 79 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLK--LLKEKYGIN 120
G V R L+ R ++ + K++ EQ+K L+ G+N
Sbjct: 253 GKEVSGR-LLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Score = 35.0 bits (79), Expect = 0.015
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKNACDHL 77
LY+ +L +T +Y+ F GPI IRV TR G AY+ ++ DA+ A D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 78 S 78
+
Sbjct: 73 N 73
Score = 33.1 bits (74), Expect = 0.056
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-NTPETRGTAYVVYEDIFDAKNACDHLSG 79
++I+NL I + +YD F +G I +V + +RG +V +E A+ A + ++G
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 80 FNVCNRYLVVLYYNANR 96
+ +R + V ++ + R
Sbjct: 161 MLLNDRKVFVGHFKSRR 177
Score = 27.7 bits (60), Expect = 2.3
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GNTPETRGTAYVVYEDIFDAKNACDHLSG 79
LY++NL I +++ F YG I +V ++G +V + +A A ++G
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 80 FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY 117
V + L V ++KEE+ +L +Y
Sbjct: 356 RIVGTKPLYVAL-----------AQRKEERKAILTNQY 382
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 42.7 bits (99), Expect = 7e-05
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACD 75
R +++ N+PY+ T E++ DIF + G + R+ ET +G + Y+D A +A
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 76 HLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDP 123
+L+G R L V NA K + K ++ YG DP
Sbjct: 76 NLNGREFSGRALRV--DNAASEKNKEELKSLGPAAPIIDSPYGDPIDP 121
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 42.4 bits (98), Expect = 9e-05
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKN 72
+Y+ NLP+ +T ++Y IF KYG + ++ + +TR G A++++ D A+N
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo
sapiens]
Length = 221
Score = 42.0 bits (97), Expect = 1e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 12 RLPPEVNRI--LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN---TPETRGTAYVVYED 66
R PP+V + L + NL Y+ + + + +F KYG + + + T E+RG A+V + D
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 67 IFDAKNACDHLSGFNVCNRYLVV 89
DA++A D + G + R L V
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV 87
>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
Length = 221
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80
+Y+ NLP + +++ D+F KYG IR+I + N A+V +ED DA++A +G+
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 81 N 81
+
Sbjct: 76 D 76
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 41.6 bits (96), Expect = 2e-04
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
+YI+N + E + D+FGK+GP ++V + +++G +V +E DA+ A D ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 79 GFNVCNRYLVVLYYNANRAFQKM----DTKKKEEQLK 111
G + + + V RA +K+ + K+ EQ+K
Sbjct: 253 GKELNGKQIYV-----GRAQKKVERQTELKRTFEQMK 284
Score = 33.1 bits (74), Expect = 0.056
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT---AYVVYEDIFDAKNACDHL 77
LY+ +L +T +Y+ F GPI IR+ T G+ AYV ++ DA++A D +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 78 S 78
+
Sbjct: 73 N 73
Score = 26.9 bits (58), Expect = 4.0
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV-GNTPETRGTAYVVYEDIFDAKNACDHLSG 79
LY++NL I E + F +G I +V ++G +V + +A A ++G
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 80 FNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKY 117
V + L V ++KEE+ L +Y
Sbjct: 356 RIVATKPLYVAL-----------AQRKEERQAYLTNEY 382
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 19 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 78
R L +NLPYK+T +E+ ++F IR V +++G AY+ ++ DA+ +
Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDGKSKGIAYIEFKTEADAEKTFEEKQ 450
Query: 79 GFNVCNRYLVVLYYNANR 96
G + R + LYY +
Sbjct: 451 GTEIDGR-SISLYYTGEK 467
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80
+Y+ NLP I +++ D+F KYG IR I + N A+V +ED DA++A G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1
[Homo sapiens]
Length = 248
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80
+Y+ NLP I +++ D+F KYG IR I + N A+V +ED DA++A G+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 81 N 81
+
Sbjct: 78 D 78
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member
F [Homo sapiens]
Length = 496
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I L + + + +FGK+GPI ++ + T ++RG A++ +E+ DAKNA ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 79 GFNVCNRYLVV 89
G ++ + + V
Sbjct: 70 GTSLHGKAIKV 80
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member
J [Homo sapiens]
Length = 496
Score = 41.2 bits (95), Expect = 2e-04
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I L + + + +FGK+GPI ++ + T ++RG A++ +E+ DAKNA ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 79 GFNVCNRYLVV 89
G ++ + + V
Sbjct: 70 GTSLHGKAIKV 80
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 40.8 bits (94), Expect = 3e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 80
+Y+ NL E+ FG YGP+R + V P G A+V +ED DA +A L G
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP--GFAFVEFEDPRDAADAVRELDGR 69
Query: 81 NVC 83
+C
Sbjct: 70 TLC 72
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member
A1 [Homo sapiens]
Length = 496
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I L + + + +FGK+GPI ++ + T ++RG A++ +E+ DAKNA ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 79 G 79
G
Sbjct: 70 G 70
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member
E [Homo sapiens]
Length = 496
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I L + + + +FGK+GPI ++ + T ++RG A++ +E+ DAKNA ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 79 G 79
G
Sbjct: 70 G 70
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member
B [Homo sapiens]
Length = 496
Score = 40.8 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNACDHLS 78
L+I L + + + +FGK+GPI ++ + T ++RG A++ +E+ DAKNA ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
Query: 79 G 79
G
Sbjct: 70 G 70
>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
[Homo sapiens]
Length = 156
Score = 40.8 bits (94), Expect = 3e-04
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKNACDHL 77
LY+ NL + T E++Y++F K G I++I +G + G +V Y DA+NA ++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 78 SGFNVCNRYL 87
+G + +R +
Sbjct: 102 NGTRLDDRII 111
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 40.8 bits (94), Expect = 3e-04
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 21 LYIRNLPYKITAEEMYDIFGKYGP---IRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
+++ LPY++T ++ +F +YG I +R T +++G ++ YED A D+
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 78 SGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK-YGINTDPP 124
+G + R + V + + RA D+++ ++ + L+EK G T P
Sbjct: 98 NGIKIKGRTIRVDHVSNYRA--PKDSEEIDDVTRQLQEKGCGARTPSP 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,726,923
Number of Sequences: 37866
Number of extensions: 173927
Number of successful extensions: 760
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 311
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.