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Search of human proteins with 7706119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706119 palate, lung and nasal epithelium associated
precursor [Homo sapiens]
(256 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706119 palate, lung and nasal epithelium associated precurso... 499 e-141
gi|18765705 palate, lung and nasal epithelium associated precurs... 499 e-141
gi|40807482 LPLUNC1 protein precursor [Homo sapiens] 75 7e-14
gi|45592961 chromosome 20 open reading frame 70 [Homo sapiens] 70 1e-12
gi|109627654 short long palate, lung and nasal epithelium carcin... 67 1e-11
gi|109627656 short long palate, lung and nasal epithelium carcin... 60 2e-09
gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens] 59 4e-09
gi|32964823 antimicrobial peptide RYA3 [Homo sapiens] 53 3e-07
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 31 0.92
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 31 1.2
gi|45433501 elastin microfibril interfacer 3 [Homo sapiens] 31 1.2
gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo sap... 30 1.6
gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo sap... 30 1.6
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 30 1.6
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 30 1.6
gi|223029519 component of oligomeric golgi complex 2 isoform 2 [... 29 4.6
gi|6678676 component of oligomeric golgi complex 2 isoform 1 [Ho... 29 4.6
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens] 28 6.0
gi|156104872 Ets2 repressor factor [Homo sapiens] 28 6.0
gi|112420992 crumbs homolog 2 [Homo sapiens] 28 7.8
>gi|7706119 palate, lung and nasal epithelium associated precursor
[Homo sapiens]
Length = 256
Score = 499 bits (1284), Expect = e-141
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 60
MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
Sbjct: 1 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 60
Query: 61 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 120
SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
Sbjct: 61 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 120
Query: 121 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 180
VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
Sbjct: 121 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 180
Query: 181 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 240
THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
Sbjct: 181 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 240
Query: 241 DIVNMLIHGLQFVIKV 256
DIVNMLIHGLQFVIKV
Sbjct: 241 DIVNMLIHGLQFVIKV 256
>gi|18765705 palate, lung and nasal epithelium associated precursor
[Homo sapiens]
Length = 256
Score = 499 bits (1284), Expect = e-141
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 60
MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL
Sbjct: 1 MFQTGGLIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLL 60
Query: 61 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 120
SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL
Sbjct: 61 SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGL 120
Query: 121 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 180
VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC
Sbjct: 121 VQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDC 180
Query: 181 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 240
THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH
Sbjct: 181 THSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVH 240
Query: 241 DIVNMLIHGLQFVIKV 256
DIVNMLIHGLQFVIKV
Sbjct: 241 DIVNMLIHGLQFVIKV 256
>gi|40807482 LPLUNC1 protein precursor [Homo sapiens]
Length = 484
Score = 74.7 bits (182), Expect = 7e-14
Identities = 75/246 (30%), Positives = 109/246 (44%), Gaps = 30/246 (12%)
Query: 12 GLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILENL 71
GLLA T+ Q L+ L L P + LT L + IL+ L
Sbjct: 12 GLLAATLIQ-----------ATLSPTAVLILGPKVIKEKLTQELKDH----NATSILQQL 56
Query: 72 PLLDIL--KPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGLVQSPDGHRL 129
PLL + KP GG +LG L+ V L +II +KV +L+L + S + L
Sbjct: 57 PLLSAMREKPAGGIP--VLGSLVNTV------LKHIIWLKVITANILQLQVKPSANDQEL 108
Query: 130 YVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQI 189
V IPL + NTPLV +++ + + A I LVL DC S GSL+I
Sbjct: 109 LVKIPLDMVAGFNTPLV-KTIVEFHMTTEAQATIRMDTSASGPTRLVLSDCATSHGSLRI 167
Query: 190 SLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLD---ITLVHDIVNML 246
LL L L + L + +L LP LV+ +CP++ G+ + LV +++
Sbjct: 168 QLLHKLSFL-VNALAKQVMNLLVPSLPNLVKNQLCPVIEASFNGMYADLLQLVKVPISLS 226
Query: 247 IHGLQF 252
I L+F
Sbjct: 227 IDRLEF 232
>gi|45592961 chromosome 20 open reading frame 70 [Homo sapiens]
Length = 249
Score = 70.5 bits (171), Expect = 1e-12
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 6/188 (3%)
Query: 65 LGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIIDIKVTDPQLLELGLVQSP 124
LG+L+ + K + LL ++ K+ +P +I +K+++ +L++
Sbjct: 62 LGVLQKSSAWQLAKQKAQEAEKLLNNVISKL---LPTNTDIFGLKISNSLILDVKAEPID 118
Query: 125 DGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEILAVRDKQERIHL-VLGDCTHS 183
DG L ++ P+ + V P++G ++ L LD+ + D Q + VLG+C
Sbjct: 119 DGKGLNLSFPVTANVTVAGPIIG-QIINLKASLDLLTAVTIETDPQTHQPVAVLGECASD 177
Query: 184 PGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIV 243
P S+ +SLLD + I ++S+ L + L+Q +CPL+ + LD+ ++ +V
Sbjct: 178 PTSISLSLLDKHSQI-INKFVNSVINTLKSTVSSLLQKEICPLIRIFIHSLDVNVIQQVV 236
Query: 244 NMLIHGLQ 251
+ H Q
Sbjct: 237 DNPQHKTQ 244
>gi|109627654 short long palate, lung and nasal epithelium carcinoma
associated 3 isoform 1 [Homo sapiens]
Length = 254
Score = 67.4 bits (163), Expect = 1e-11
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 7 LIVFYGLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLG 66
L++F GLLA +A P Q P L + +L ++ GL+
Sbjct: 8 LLIFLGLLALPLA-------PHKQPWP-----GLAQAHRDNKSTLARIIAQGLIKHNAES 55
Query: 67 ILENLPLLDILKPGGGTSGGLLGGLLG--KVTSVIPGLNNIIDIKVTDPQLLELGLVQSP 124
++N+ D L + GL+G L+ K NI +I+ L+ G +Q
Sbjct: 56 RIQNIHFGDRLNASAQVAPGLVGWLISGRKHQQQQESSINITNIQ------LDCGGIQI- 108
Query: 125 DGHRLYVTIPLGIKLQVNT-PLVGASLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHS 183
H+ + + + ++ + P +++++ + I E +D+ R LV+G C
Sbjct: 109 SFHKEWFSANISLEFDLELRPSFDNNIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAE 168
Query: 184 PGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIV 243
P S+ +++L P + L +L L KVLP +V+ VCPL+ E+L LD+ L+ ++
Sbjct: 169 PSSVHVAILTEAIPPKMNQFLYNLKENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLI 228
>gi|109627656 short long palate, lung and nasal epithelium carcinoma
associated 3 isoform 2 [Homo sapiens]
Length = 218
Score = 59.7 bits (143), Expect = 2e-09
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 149 SLLRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLT 208
+++++ + I E +D+ R LV+G C P S+ +++L P + L +L
Sbjct: 98 NIVKMCAHMSIVVEFWLEKDEFGRRDLVIGKCDAEPSSVHVAILTEAIPPKMNQFLYNLK 157
Query: 209 GILNKVLPELVQGNVCPLVNEVLRGLDITLVHDIV 243
L KVLP +V+ VCPL+ E+L LD+ L+ ++
Sbjct: 158 ENLQKVLPHMVESQVCPLIGEILGQLDVKLLKSLI 192
>gi|223278377 antimicrobial peptide RY2G5 [Homo sapiens]
Length = 614
Score = 58.9 bits (141), Expect = 4e-09
Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 44/204 (21%)
Query: 42 LSPTGLAGSLTNALSNGLLSG--GLLGILENLPLLDILKPGGGT--SGGLLGG-----LL 92
+ P GL G+ ++G+L+G GLLG GGG GGLLGG +L
Sbjct: 166 VGPGGLLGTGGMLAADGILAGQGGLLG-------------GGGLLGDGGLLGGGGVLGVL 212
Query: 93 GK--VTSVIPGLNNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASL 150
G+ + S + G+ + +++T P++ RL + + + L + G SL
Sbjct: 213 GEGGILSTVQGITGLRIVELTLPRV----------SVRLLPGVGVYLSLYTRVAINGKSL 262
Query: 151 ---LRLAVKLDITAEILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSL 207
L +AV+++ITA++ D+ LV+ C G +++ LL GL P L+D+L
Sbjct: 263 IGFLDIAVEVNITAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLP----NLVDNL 318
Query: 208 TGILNKVLPELVQGNVCPLVNEVL 231
+N+VL +++ +CP+V+ VL
Sbjct: 319 ---VNRVLADVLPDLLCPIVDVVL 339
>gi|32964823 antimicrobial peptide RYA3 [Homo sapiens]
Length = 476
Score = 52.8 bits (125), Expect = 3e-07
Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 38/185 (20%)
Query: 49 GSLTNALSNGLL-SGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGLNNIID 107
GS+T A++ GLL SGGLLG GGLLG G V V+ L+ +
Sbjct: 58 GSVT-AVNRGLLGSGGLLG-----------------GGGLLGH--GGVFGVVEELSGLKI 97
Query: 108 IKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAEI-LAV 166
++T P++L ++ G + +++ + + + PL G LL+LA ++++T+ + LAV
Sbjct: 98 EELTLPKVL----LKLLPGFGVQLSLHTKVGMHCSGPLGG--LLQLAAEVNVTSRVALAV 151
Query: 167 RDKQERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPL 226
+ I L+L C+ G ISL GL P P+ G+++ + L KVLP G +CP+
Sbjct: 152 SSRGTPI-LILKRCSTLLG--HISLFSGLLPTPLFGVVEQM---LFKVLP----GLLCPV 201
Query: 227 VNEVL 231
V+ VL
Sbjct: 202 VDSVL 206
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 31.2 bits (69), Expect = 0.92
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 26 VPLDQTLPLNVNPALPLSPTGLAGSLTNALSNG---LLSGGLLGILENLPLLDILKPGGG 82
V + LP+ P L TG+AG+L + G L +G + G L L GGG
Sbjct: 36 VKIPAALPVAAAPYPGLVETGVAGTLGGGAALGSEFLGAGSVAGALGGAGLT-----GGG 90
Query: 83 TSGGLLGGLLGKVTSVIPG 101
T+ G+ G G + + G
Sbjct: 91 TAAGVAGAAAGVAGAAVAG 109
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 25 PVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTS 84
P+PL Q P + ALP +P L N L + G L +P+ + L G S
Sbjct: 836 PLPLLQQSPATLPLALPGAPAPLPPQPQNGLGRAPGAAG----LGAMPMAEGLLGGLAGS 891
Query: 85 GGL-LGGLLG 93
GGL L GLLG
Sbjct: 892 GGLPLNGLLG 901
>gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]
Length = 766
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 12 GLLAQTMAQFGGLPVPLDQTLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILENL 71
G LA A+ GL L P P AG LS +L GG+ G+LE L
Sbjct: 386 GQLALINARMDGLERALQAVTETQRGPGAP------AGDELTRLSAAMLEGGVDGLLEGL 439
Query: 72 PLLDILKPGGGTSGGLLG 89
L+ GT GG G
Sbjct: 440 ETLN------GTEGGARG 451
>gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 184 PGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRG 233
PG+ L + G P L+ LT + +V E G CP++ LRG
Sbjct: 104 PGAFLAGLRELCGRSPHWSLVQLLTELFRRVAEESAGGTCCPVLRSSLRG 153
>gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 184 PGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEVLRG 233
PG+ L + G P L+ LT + +V E G CP++ LRG
Sbjct: 104 PGAFLAGLRELCGRSPHWSLVQLLTELFRRVAEESAGGTCCPVLRSSLRG 153
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 30.4 bits (67), Expect = 1.6
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 30 QTLPLNVNPALPLSPTGLAGSLTNALSN-GLLSGGLLGILENLPLLDILKPGGGTSGG-- 86
+T L NP+ +P + L + + G ++ G I+ +P+ L G T GG
Sbjct: 738 KTSGLPANPSPGPAPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKP 797
Query: 87 ------LLGGLLGKVTSVIPGL----NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLG 136
L G L K+ S +PGL N +KV P + L L P R+ P+G
Sbjct: 798 TAIHQLLTNGGLAKLASSLPGLAQISNQASGLKV--PTTITLTLRGQPS--RITTLSPMG 853
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 30.4 bits (67), Expect = 1.6
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 30 QTLPLNVNPALPLSPTGLAGSLTNALSN-GLLSGGLLGILENLPLLDILKPGGGTSGG-- 86
+T L NP+ +P + L + + G ++ G I+ +P+ L G T GG
Sbjct: 651 KTSGLPANPSPGPAPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKP 710
Query: 87 ------LLGGLLGKVTSVIPGL----NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLG 136
L G L K+ S +PGL N +KV P + L L P R+ P+G
Sbjct: 711 TAIHQLLTNGGLAKLASSLPGLAQISNQASGLKV--PTTITLTLRGQPS--RITTLSPMG 766
>gi|223029519 component of oligomeric golgi complex 2 isoform 2
[Homo sapiens]
Length = 737
Score = 28.9 bits (63), Expect = 4.6
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 171 ERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEV 230
E+I +L +S S + S L+ PL +L+ + N++ VQ PL+++V
Sbjct: 141 EKIEKIL----NSQSSKETSALEASSPLLTGQILERIATEFNQLQFHAVQSKGMPLLDKV 196
Query: 231 ---LRGLDITLVHDIVNMLIHGLQ 251
+ G+ L + +L+ GLQ
Sbjct: 197 RPRIAGITAMLQQSLEGLLLEGLQ 220
>gi|6678676 component of oligomeric golgi complex 2 isoform 1 [Homo
sapiens]
Length = 738
Score = 28.9 bits (63), Expect = 4.6
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 171 ERIHLVLGDCTHSPGSLQISLLDGLGPLPIQGLLDSLTGILNKVLPELVQGNVCPLVNEV 230
E+I +L +S S + S L+ PL +L+ + N++ VQ PL+++V
Sbjct: 141 EKIEKIL----NSQSSKETSALEASSPLLTGQILERIATEFNQLQFHAVQSKGMPLLDKV 196
Query: 231 ---LRGLDITLVHDIVNMLIHGLQ 251
+ G+ L + +L+ GLQ
Sbjct: 197 RPRIAGITAMLQQSLEGLLLEGLQ 220
>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 516
Score = 28.5 bits (62), Expect = 6.0
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 33 PLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLL 92
P NV P PL P +L + L G G+ + PG L+ LL
Sbjct: 23 PHNVRPQFPLQPFAAVNALAQTVQLELAQLGPAGV-------ESANPGHRIKSDLVPHLL 75
Query: 93 GKVTSVIPGLNNI 105
G++ + G+ ++
Sbjct: 76 GQILGSLDGIQSL 88
>gi|156104872 Ets2 repressor factor [Homo sapiens]
Length = 548
Score = 28.5 bits (62), Expect = 6.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 32 LPLNVNPALPLSPTGLAGSLTNALSNGLLSGG 63
LP ++PALP++PT LA + + LS SGG
Sbjct: 260 LPPQLSPALPMTPTHLAYTPSPTLSPMYPSGG 291
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 28.1 bits (61), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 31 TLPLNVNPALPLSPTGLAGSLTNALSNGLLSGGLLGILENLPL 73
TLP NP L AG ++ + N SG + + LPL
Sbjct: 1174 TLPCEANPCLNGGTCRAAGGVSECICNARFSGQFCEVAKGLPL 1216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.145 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,798,182
Number of Sequences: 37866
Number of extensions: 472494
Number of successful extensions: 1198
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 22
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.