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Search of human proteins with 7705983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705983 coatomer protein complex, subunit zeta 2 [Homo
sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705983 coatomer protein complex, subunit zeta 2 [Homo sapiens] 420 e-118
gi|7706337 coatomer protein complex, subunit zeta 1 [Homo sapiens] 263 6e-71
gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [H... 54 7e-08
gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [H... 52 3e-07
gi|189409104 adaptor-related protein complex 4, sigma 1 subunit ... 45 4e-05
gi|88703051 adaptor-related protein complex 1, sigma 3 subunit [... 40 0.002
gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [H... 35 0.046
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 34 0.079
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 32 0.30
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 32 0.39
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 32 0.39
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 32 0.39
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 32 0.51
gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens] 31 0.87
gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo... 31 0.87
gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens] 31 0.87
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 30 1.1
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 30 1.1
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 30 1.5
gi|239755427 PREDICTED: hypothetical protein isoform 2 [Homo sap... 30 1.5
gi|239755425 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 1.5
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 30 1.5
gi|239749889 PREDICTED: hypothetical protein isoform 2 [Homo sap... 30 1.5
gi|239749887 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 1.5
gi|239744191 PREDICTED: hypothetical protein isoform 2 [Homo sap... 30 1.5
gi|239744189 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 1.5
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 1.5
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 1.5
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 1.5
>gi|7705983 coatomer protein complex, subunit zeta 2 [Homo sapiens]
Length = 210
Score = 420 bits (1080), Expect = e-118
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL 60
MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL
Sbjct: 1 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL 60
Query: 61 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE 120
AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE
Sbjct: 61 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE 120
Query: 121 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN 180
LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN
Sbjct: 121 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN 180
Query: 181 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK 210
FRADDGGLTEQSVAQVLQSAKEQIKWSLLK
Sbjct: 181 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK 210
>gi|7706337 coatomer protein complex, subunit zeta 1 [Homo sapiens]
Length = 177
Score = 263 bits (673), Expect = 6e-71
Identities = 128/171 (74%), Positives = 150/171 (87%)
Query: 40 EPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMT 99
EPSLYT+KA+ ILDNDG RL AKYYDDT+PS+KEQ FEKN+FNKT RT+SEIA G+T
Sbjct: 7 EPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLT 66
Query: 100 IVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLD 159
+VYK+SIDL+ YV+GSSYENELMLM+VL CLF+SL+ MLRKNVEKR LLENM+G FL +D
Sbjct: 67 VVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVD 126
Query: 160 EIVDGGVILESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKWSLLK 210
EIVDGGVILESDPQQV+ +V R +D LTEQ+V+QVLQSAKEQIKWSLL+
Sbjct: 127 EIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR 177
>gi|4502861 adaptor-related protein complex 3, sigma 1 subunit [Homo
sapiens]
Length = 193
Score = 54.3 bits (129), Expect = 7e-08
Identities = 35/144 (24%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFF--GGMTI--- 100
IKA+ I +N G+ L+K+Y ++Q++ + F+ S+ + + F GG+ I
Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQII--RETFHLVSKRDENVCNFLEGGLLIGGS 59
Query: 101 ----VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFL 156
+Y++ L+ S E+EL ++ ++ E+L+ +NV + L+ ++D
Sbjct: 60 DNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF-ENVCELDLIFHVDKVHN 118
Query: 157 VLDEIVDGGVILESDPQQVIQKVN 180
+L E+V GG++LE++ +++ +++
Sbjct: 119 ILAEMVMGGMVLETNMNEIVTQID 142
>gi|5031581 adaptor-related protein complex 3, sigma 2 subunit [Homo
sapiens]
Length = 193
Score = 52.4 bits (124), Expect = 3e-07
Identities = 38/157 (24%), Positives = 80/157 (50%), Gaps = 16/157 (10%)
Query: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFF--GGMTI--- 100
I+A+ + +N G+ L ++Y +++Q+V E F+ + + I F GG I
Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRE--TFHLVLKRDDNICNFLEGGSLIGGS 59
Query: 101 ----VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFL 156
+Y++ L+ S E+EL ++ ++ E+L+ +NV + L+ +MD
Sbjct: 60 DYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF-ENVCELDLIFHMDKVHY 118
Query: 157 VLDEIVDGGVILESDPQQVIQKV----NFRADDGGLT 189
+L E+V GG++LE++ +++ ++ +GGL+
Sbjct: 119 ILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155
>gi|189409104 adaptor-related protein complex 4, sigma 1 subunit
isoform 2 [Homo sapiens]
Length = 144
Score = 45.1 bits (105), Expect = 4e-05
Identities = 31/134 (23%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAF--FGGMTIVY 102
IK +++ G+ L+KYY+ + ++ + E V SR+ + +F + ++Y
Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHV--DINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIY 59
Query: 103 KNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIV 162
+ LF+ V + ENE+ + + E L+ + V + ++ N+D ++LDE+V
Sbjct: 60 RQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSR-VSELDIMFNLDKVHIILDEMV 118
Query: 163 DGGVILESDPQQVI 176
G I+E++ +++
Sbjct: 119 LNGCIVETNRARIL 132
>gi|88703051 adaptor-related protein complex 1, sigma 3 subunit
[Homo sapiens]
Length = 154
Score = 39.7 bits (91), Expect = 0.002
Identities = 32/154 (20%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAF--FGGMTIVYK 103
I + + G+ L K+Y T P + + + + V SR +F + + +VYK
Sbjct: 2 IHFILLFSRQGKLRLQKWYI-TLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYK 60
Query: 104 NSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVD 163
L+ + +NEL+ + ++ E L+ NV + ++ N + A+ +LDE +
Sbjct: 61 RYASLYFCCAIENQDNELLTLEIVHRYVELLDKYF-GNVCELDIIFNFEKAYFILDEFII 119
Query: 164 GGVILESDPQQVIQKVNFRADDGGLTEQSVAQVL 197
GG I E+ + ++ + +D + ++++ + +
Sbjct: 120 GGEIQETSKKIAVKAI----EDSDMLQETMEEYM 149
>gi|22027655 adaptor-related protein complex 1 sigma 2 subunit [Homo
sapiens]
Length = 157
Score = 35.0 bits (79), Expect = 0.046
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 49 VFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAF--FGGMTIVYKNSI 106
+ + G+ L K+Y K+++ E V +R +F + + IVYK
Sbjct: 4 MLLFSRQGKLRLQKWYVPLSDKEKKKITREL-VQTVLARKPKMCSFLEWRDLKIVYKRYA 62
Query: 107 DLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGV 166
L+ +NEL+ + ++ E L+ E ++ N + A+ +LDE + GG
Sbjct: 63 SLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELD-IIFNFEKAYFILDEFLLGGE 121
Query: 167 ILESDPQQVIQKV 179
+ E+ + V++ +
Sbjct: 122 VQETSKKNVLKAI 134
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 34.3 bits (77), Expect = 0.079
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 4 PEAWPRPHPGEGAAAAQAGGPAP-PARAGEPSG 35
P+ PRP PG +A A AGG AP ARA P G
Sbjct: 116 PQPAPRPAPGRSSALALAGGAAPGVARAQRPGG 148
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 0.30
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 PHPGEGAAAAQAGGPAPPARAGEP---SGLRLQEPS 42
P G GA A+ AG P PP R P G R QEPS
Sbjct: 96 PAAGRGAEASAAGPPGPPTRPPGPWRWKGARGQEPS 131
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 32.0 bits (71), Expect = 0.39
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 4 PEAWPRPHPGEGAAAAQAGGPAPPARA-GEPSGL 36
PE WPR G G A GGP A G P GL
Sbjct: 268 PEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGGL 301
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 32.0 bits (71), Expect = 0.39
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 4 PEAWPRPHPGEGAAAAQAGGPAPPARA-GEPSGL 36
PE WPR G G A GGP A G P GL
Sbjct: 231 PEVWPRSEEGSGGLAEVRGGPGGLAEVRGGPGGL 264
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 32.0 bits (71), Expect = 0.39
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 4 PEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKA 48
P P P PG GA +Q P G+P +++P L IKA
Sbjct: 80 PPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKA 124
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 31.6 bits (70), Expect = 0.51
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAG----GPAPPARAGEPSGLRLQEP-SLYTIKAVFILDND 55
+Q P P P PG G A GP PP R GEP L +E L +A ++ +
Sbjct: 102 LQPPPPPPPPPPGLGLGFPMAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQE 161
Query: 56 GRRLLAKYYDDTFPSMKEQMVFEK 79
R AK D S+KE + E+
Sbjct: 162 ER---AKQQGD--HSLKEHELLEQ 180
>gi|116292180 outer dense fiber of sperm tails 3B [Homo sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 0.87
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 5 EAWP---RPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPS 42
+AW RPH G AA GGP P + +G L +PS
Sbjct: 4 DAWVGLWRPHRPRGPIAAHYGGPGPKYKLPPNTGYALHDPS 44
>gi|9506797 adaptor-related protein complex 1, mu 2 subunit [Homo
sapiens]
Length = 423
Score = 30.8 bits (68), Expect = 0.87
Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 48 AVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSID 107
AVFILD G+ L+++ Y K + V + + + G + ++ +
Sbjct: 5 AVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHSN 64
Query: 108 LFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVI 167
L+L S N ++ S L E K +E+ + +N + +LDE++D G
Sbjct: 65 LYLVATTSKNANASLVYSFLYKTIEVFCEYF-KELEEESIRDNFVIVYELLDELMDFGFP 123
Query: 168 LESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKW 206
+D +++Q+ + E ++V + + W
Sbjct: 124 QTTD-SKILQE--YITQQSNKLETGKSRVPPTVTNAVSW 159
>gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens]
Length = 236
Score = 30.8 bits (68), Expect = 0.87
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 13 GEGAAAAQAGGPAPPARAGEPSGLR 37
GEGA AA GGP P AR G + R
Sbjct: 43 GEGAMAAARGGPVPAAREGRMAAAR 67
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 4 PEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLY 44
P RP PG AAA G P P + G P+ R S Y
Sbjct: 755 PRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPY 795
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 8 PRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEP 41
P PG GA AA G P PPA G G L+ P
Sbjct: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP 45
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 8 PRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEP 41
P PG GA AA G P PPA G G L+ P
Sbjct: 12 PPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGP 45
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.0 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 RPEAWPRPHPGEGAAAAQAGGPAPPA 28
RP++W + G G +A AG APPA
Sbjct: 145 RPQSWEQKPRGPGRSARSAGAAAPPA 170
>gi|239755427 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|239755425 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 30.0 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 RPEAWPRPHPGEGAAAAQAGGPAPPA 28
RP++W + G G +A AG APPA
Sbjct: 145 RPQSWEQKPRGPGRSARSAGAAAPPA 170
>gi|239749889 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|239749887 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|239744191 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 120
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|239744189 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 103
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1 MQRPEAWPRPHPGEGAAAAQAGGPAP 26
M P+ W P PG AAAA+A P P
Sbjct: 15 MWSPKEWWEPQPGRDAAAARARSPYP 40
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 13 GEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDG 56
G G+A+A GG +PP G + + + + Y + F L +DG
Sbjct: 101 GTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDG 144
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 13 GEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDG 56
G G+A+A GG +PP G + + + + Y + F L +DG
Sbjct: 101 GTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDG 144
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 13 GEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDG 56
G G+A+A GG +PP G + + + + Y + F L +DG
Sbjct: 101 GTGSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDG 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,277,584
Number of Sequences: 37866
Number of extensions: 392030
Number of successful extensions: 3562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 3384
Number of HSP's gapped (non-prelim): 219
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.