Guide to the Human Genome
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Name: AP1S3 Sequence: fasta or formatted (154aa) NCBI GI: 88703051
Description:

adaptor-related protein complex 1, sigma 3 subunit

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          5           1
 C cysteine            1.9          3           2
 D aspartate           5.2          8           1
 E glutamate          10.4         16           2
 F phenylalanine       6.5         10           1
 G glycine             3.2          5           2
 H histidine           1.9          3           1
 I isoleucine         11.0         17           2
 K lysine              9.1         14           2
 L leucine            11.0         17           2
 M methionine          2.6          4           1
 N asparagine          3.2          5           1
 P proline             1.3          2           1
 Q glutamine           3.9          6           1
 R arginine            5.2          8           1
 S serine              4.5          7           2
 T threonine           4.5          7           1
 V valine              4.5          7           1
 W tryptophan          1.3          2           1
 Y tyrosine            5.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adaptor-related protein complex 1, sigma 3 subunit [... 
AP1S2                 0.738   adaptor-related protein complex 1 sigma 2 subunit [H...
AP1S1                 0.713   adaptor-related protein complex 1, sigma 1 subunit [H...
AP2S1                 0.402   adaptor-related protein complex 2, sigma 1 subunit i...
AP4S1                 0.315   adaptor-related protein complex 4, sigma 1 subunit ...
AP3S2                 0.297   adaptor-related protein complex 3, sigma 2 subunit [H...
AP3S1                 0.266   adaptor-related protein complex 3, sigma 1 subunit [H...
AP4S1                 0.234   adaptor-related protein complex 4, sigma 1 subunit i...
AP2S1                 0.192   adaptor-related protein complex 2, sigma 1 subunit i...
COPZ1                 0.077   coatomer protein complex, subunit zeta 1 
AP2M1                 0.056   adaptor-related protein complex 2, mu 1 subunit isof...
COPZ2                 0.052   coatomer protein complex, subunit zeta 2 
AP2M1                 0.049   adaptor-related protein complex 2, mu 1 subunit isof...
AP3M2                 0.045   adaptor-related protein complex 3, mu 2 subunit [Ho...
AP3M2                 0.045   adaptor-related protein complex 3, mu 2 subunit [Homo...
AP3M1                 0.045   adaptor-related protein complex 3, mu 1 subunit [Homo...
AP3M1                 0.045   adaptor-related protein complex 3, mu 1 subunit [Hom...
AP1M2                 0.042   adaptor-related protein complex 1, mu 2 subunit [Homo...
AP4M1                 0.035   adaptor-related protein complex 4, mu 1 subunit [Hom...
AP1M1                 0.028   adaptor-related protein complex 1, mu 1 subunit iso...
AP1M1                 0.028   adaptor-related protein complex 1, mu 1 subunit isof...
ENTPD4                0.010   ectonucleoside triphosphate diphosphohydrolase 4 is...
ENTPD4                0.010   ectonucleoside triphosphate diphosphohydrolase 4 isof...
PTPN12                0.010   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.010   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.010   protein tyrosine phosphatase, non-receptor type 12 ...
ARL2BP                0.010   binder of Arl Two 
PRDX6                 0.007   peroxiredoxin 6 
CDR2                  0.007   cerebellar degeneration-related protein 2 
ARCN1                 0.007   archain isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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