Guide to the Human Genome
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Name: GMNN Sequence: fasta or formatted (209aa) NCBI GI: 7705682
Description:

geminin

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         11           1
 C cysteine            1.0          2           1
 D aspartate           4.3          9           1
 E glutamate          15.8         33           3
 F phenylalanine       1.4          3           1
 G glycine             4.3          9           2
 H histidine           1.9          4           1
 I isoleucine          4.8         10           1
 K lysine              9.6         20           2
 L leucine             8.1         17           1
 M methionine          2.4          5           1
 N asparagine          6.7         14           1
 P proline             3.8          8           1
 Q glutamine           3.8          8           1
 R arginine            4.3          9           2
 S serine             11.0         23           3
 T threonine           4.3          9           2
 V valine              5.3         11           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   geminin 
CCDC123               0.047   coiled-coil domain containing 123 
TCHP                  0.039   trichoplein 
TCHP                  0.039   trichoplein 
GOLGA2                0.039   Golgi autoantigen, golgin subfamily a, 2 
KIF15                 0.039   kinesin family member 15 
ROCK2                 0.036   Rho-associated, coiled-coil containing protein kinas...
GOLGB1                0.036   golgi autoantigen, golgin subfamily b, macrogolgin ...
ENOX1                 0.036   ecto-NOX disulfide-thiol exchanger 1 
ENOX1                 0.036   ecto-NOX disulfide-thiol exchanger 1 
STMN3                 0.034   SCG10-like-protein 
CALD1                 0.031   caldesmon 1 isoform 4 
CALD1                 0.031   caldesmon 1 isoform 3 
CALD1                 0.031   caldesmon 1 isoform 1 
ENKUR                 0.031   enkurin 
CCDC88A               0.031   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.031   coiled-coil domain containing 88A isoform 1 
SNX16                 0.031   sorting nexin 16 isoform a 
SNX16                 0.031   sorting nexin 16 isoform a 
SNX16                 0.031   sorting nexin 16 isoform b 
PPFIA2                0.031   PTPRF interacting protein alpha 2 
CALCOCO2              0.031   calcium binding and coiled-coil domain 2 
CLU                   0.028   clusterin isoform 2 
CLU                   0.028   clusterin isoform 1 
CLIP1                 0.028   restin isoform b 
NUMA1                 0.028   nuclear mitotic apparatus protein 1 
ANP32E                0.028   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
FAM133B               0.028   hypothetical protein LOC257415 isoform 2 
FAM133B               0.028   hypothetical protein LOC257415 isoform 1 
DAAM1                 0.028   dishevelled-associated activator of morphogenesis 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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