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Search of human proteins with 7705431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705431 coiled-coil domain containing 72 [Homo sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705431 coiled-coil domain containing 72 [Homo sapiens] 129 5e-31
gi|169161767 PREDICTED: hypothetical protein [Homo sapiens] 123 4e-29
gi|169161534 PREDICTED: hypothetical protein [Homo sapiens] 123 4e-29
gi|169162811 PREDICTED: hypothetical protein [Homo sapiens] 123 4e-29
gi|169170025 PREDICTED: hypothetical protein [Homo sapiens] 107 3e-24
gi|239508822 PREDICTED: hypothetical protein [Homo sapiens] 107 3e-24
gi|169169043 PREDICTED: hypothetical protein [Homo sapiens] 77 3e-15
gi|239748872 PREDICTED: hypothetical protein [Homo sapiens] 77 3e-15
gi|239742901 PREDICTED: hypothetical protein [Homo sapiens] 77 3e-15
gi|169164035 PREDICTED: hypothetical protein [Homo sapiens] 59 6e-10
gi|169163250 PREDICTED: hypothetical protein [Homo sapiens] 59 6e-10
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 39 9e-04
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 39 9e-04
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 39 9e-04
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 37 0.004
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 35 0.013
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 35 0.013
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 35 0.013
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 34 0.022
gi|46240864 sperm associated antigen 17 [Homo sapiens] 34 0.022
gi|34996489 pleckstrin homology domain interacting protein [Homo... 33 0.037
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 33 0.037
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 33 0.037
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 33 0.037
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 33 0.037
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 33 0.049
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 33 0.049
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 33 0.049
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 33 0.049
>gi|7705431 coiled-coil domain containing 72 [Homo sapiens]
Length = 64
Score = 129 bits (324), Expect = 5e-31
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGKK 64
SGKK
Sbjct: 61 SGKK 64
>gi|169161767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 123 bits (308), Expect = 4e-29
Identities = 61/64 (95%), Positives = 62/64 (96%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG EGGKKKP KQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGKK 64
SG+K
Sbjct: 61 SGEK 64
>gi|169161534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 123 bits (308), Expect = 4e-29
Identities = 61/64 (95%), Positives = 62/64 (96%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG EGGKKKP KQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGKK 64
SG+K
Sbjct: 61 SGEK 64
>gi|169162811 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 123 bits (308), Expect = 4e-29
Identities = 61/64 (95%), Positives = 62/64 (96%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG EGGKKKP KQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGKK 64
SG+K
Sbjct: 61 SGEK 64
>gi|169170025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 107 bits (266), Expect = 3e-24
Identities = 54/64 (84%), Positives = 55/64 (85%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG +GGKKK LKQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 SGKK 64
KK
Sbjct: 61 FAKK 64
>gi|239508822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 107 bits (266), Expect = 3e-24
Identities = 54/64 (84%), Positives = 55/64 (85%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG +GGKKK LKQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 SGKK 64
KK
Sbjct: 61 FAKK 64
>gi|169169043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKPLKQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239748872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKPLKQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239742901 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKPLKQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|169164035 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 59.3 bits (142), Expect = 6e-10
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLE 41
MSG +GGKK+PLKQ K+QAKEMD+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|169163250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 59.3 bits (142), Expect = 6e-10
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLE 41
MSG +GGKK+PLKQ K+QAKEMD+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSG 62
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEG 279
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 GKKKPLKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K +KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGK 63
R+GG+ + K E++ A +++++EEQ + E+ + K GK P +KK K
Sbjct: 288 RKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQ-QNKDEGKKP----EVKKVEK 342
Query: 64 K 64
K
Sbjct: 343 K 343
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSG 62
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEG 279
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 GKKKPLKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K +KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 38.9 bits (89), Expect = 9e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSG 62
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEG 279
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 7 GKKKPLKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K +KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGK 63
R+GG+ + K E++ A +++++EEQ + E+ + K GK P +KK K
Sbjct: 288 RKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEQ-QNKDEGKKP----EVKKVEK 342
Query: 64 K 64
K
Sbjct: 343 K 343
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 3 GREGGKKKPLKQPKKQAK-EMDEEDKAFKQKQKEEQKKLEELK 44
G+ G+ + + +P ++ K E EEDKA K ++KEE+KK EE K
Sbjct: 496 GKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEK 538
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKA 47
E + K K KK+ ++ DEE+K K+ KE K+ +++ A
Sbjct: 516 EKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTA 558
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAG 49
+E K+K ++ K++ KE ++E + K+K+K+++KK ++L AK G
Sbjct: 74 KEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCG 119
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
K+K ++ K++ KE ++E + K+K+K+++KK ++ K K K
Sbjct: 74 KEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAK 116
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 16 KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
K++ KE ++E + K+K+KE++KK ++ K K K L
Sbjct: 76 KEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKL 113
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK K++ KE ++E + K+K+KE++K+ ++ K K K
Sbjct: 66 KKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKK 108
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 9 KKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK KK +E + K+K+KE++K+ E+ K K K
Sbjct: 59 KKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKK 100
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.013
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G+ G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.013
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G+ G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.013
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G+ G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
+E K+K K+ KK+ K+ E++K K+K++E++K+ E + K K
Sbjct: 693 KEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEK 739
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQK-KLEELKAKAAGKGP 52
KKK K+ +K+ KE ++E + ++++KE++K K E++K + P
Sbjct: 709 KKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAP 754
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
+E KKK K+ KK K+ E++K K+++KE++++ + K K K
Sbjct: 697 KEKEKKKDKKEKKK--KKEKEKEKKEKEREKEKREREKREKEKEKHK 741
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 9 KKPLK-QPKKQAKEMD---EEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK LK + KK+ K+ D E+DK K K KE+ K E+ K K G+
Sbjct: 526 KKELKTKMKKKEKQRDREREKDKN-KDKSKEKDKVKEKEKDKETGR 570
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/39 (23%), Positives = 28/39 (71%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAK 46
+K+ +K+ +K+ + +++ K K+K+K+E+++ +E + +
Sbjct: 692 EKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKRER 730
>gi|46240864 sperm associated antigen 17 [Homo sapiens]
Length = 2223
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 3 GREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL 43
G+E GKKK +K+ ++ +K+K KEEQ K++E+
Sbjct: 963 GKEAGKKKGKDNAEKEDSRSLKKKSPYKEKSKEEQVKIQEV 1003
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK 64
KK P + KK DEE+++ KQKQK Q K E+ K GP++ K +K
Sbjct: 867 KKVPKNKTKKAESSSDEEEESEKQKQK--QIKKEKKKVNEEKDGPISPKKKKPKERK 921
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGI 58
E +K+ KQ KK+ K+++EE +K KK +E K K G L G+
Sbjct: 885 EESEKQKQKQIKKEKKKVNEEKDGPISPKK---KKPKERKQKRLAVGELTENGL 935
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGK 63
RE + K ++ +++ KE E++K FK+K++E +K+ + L+ K GK +T I S K
Sbjct: 361 RERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKDTLRDK--GKKAESTESIGSSEK 418
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
E K++ K+ K++ K ++ E K++QKE++KK +E+K K GP+
Sbjct: 466 EASKEREKKREKEEKKRLELE----KKEQKEKEKKEQEIKKKFKLTGPI 510
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQK 34
RE +KK L+ KK+ KE +++++ K+K K
Sbjct: 475 REKEEKKRLELEKKEQKEKEKKEQEIKKKFK 505
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 5 EGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
E K++ K+ K++ K ++ E K++QKE++KK +E+K K GP+
Sbjct: 466 EASKEREKKREKEEKKRLELE----KKEQKEKEKKEQEIKKKFKLTGPI 510
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQK 34
RE +KK L+ KK+ KE +++++ K+K K
Sbjct: 475 REKEEKKRLELEKKEQKEKEKKEQEIKKKFK 505
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGK 63
RE + K ++ +++ KE E++K FK+K++E +K+ + L+ K GK +T I S K
Sbjct: 348 RERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKDTLRDK--GKKAESTESIGSSEK 405
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK 64
+KK K KK+ K ++E K+K+KE++K + K K + T G KKS K+
Sbjct: 838 EKKSKKPKKKEKKHKEKERDKEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQ 894
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 9 KKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKA 47
+K + +K++K+ +++K K+K+++++KK E+ K K+
Sbjct: 831 EKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKKS 869
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGP 52
K+K + KK+ KE + K K+K ++E+++ + K K+ + P
Sbjct: 852 KEKERDKEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQPP 896
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATG 56
+E K+K K+ K K+ ++K + K K++ KK +AAG+ P+ G
Sbjct: 858 KEKKKEKEKKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGSEEAAGE-PVQNG 909
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 4 REGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGK 63
RE ++K K+ +KQ KE ++++K ++++K+ Q + L+ KA G GG + S +
Sbjct: 742 REKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPHDGGDRPSAE 801
Score = 31.2 bits (69), Expect = 0.19
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 6 GGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEE 42
G K+ KQ K++ K+ E K K+++KE QK+ +E
Sbjct: 716 GSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKE 752
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 10 KPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAA 48
KP K+ +K+ KE ++DK K+K+K + K EE KAK A
Sbjct: 487 KPKKKKEKKEKEKKKKDKE-KEKEKHKVKAEEEKKAKVA 524
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 8 KKKPLKQPKKQAKEMDEEDKAFKQKQKEEQK--------KLEELKAKAAGKGPLATGG-- 57
KKK K+ +K+ K+ ++E + K K +EE+K + ++ KA A T G
Sbjct: 490 KKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAPPAKQAQQKKAPAKKANSTTTAGRQ 549
Query: 58 IKKSGKK 64
+KK GK+
Sbjct: 550 LKKGGKQ 556
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 11 PLKQPKKQAKEMDEEDKAF-KQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK 64
P+ +PKK+ ++ ++E K K+K+KE+ K E + KA P KK+ K
Sbjct: 484 PVNKPKKKKEKKEKEKKKKDKEKEKEKHKVKAEEEKKAKVAPPAKQAQQKKAPAK 538
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 33.1 bits (74), Expect = 0.049
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 13 KQPKKQAKEMDEEDKAFKQ-----KQKEEQKKLEELKAKAAGKGPLATGGIKK 60
K+ KK++K+ E+D+ K ++KEE K EE AK P ++GG+K+
Sbjct: 460 KKSKKKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKE 512
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.122 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,869,151
Number of Sequences: 37866
Number of extensions: 120147
Number of successful extensions: 3224
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 1352
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.