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Search of human proteins with 13994335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 474 e-134
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 92 4e-19
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 90 2e-18
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 90 2e-18
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 90 2e-18
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 90 2e-18
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 90 2e-18
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 90 2e-18
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 85 6e-17
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 84 8e-17
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 84 8e-17
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 84 8e-17
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 84 1e-16
gi|57232759 intestine-specific homeobox [Homo sapiens] 84 1e-16
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 83 2e-16
gi|7706659 paired related homeobox 2 [Homo sapiens] 82 3e-16
gi|169881277 PROP paired-like homeobox 1 [Homo sapiens] 82 4e-16
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 82 4e-16
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 82 5e-16
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 81 9e-16
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 81 9e-16
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 80 1e-15
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 80 2e-15
gi|46249382 paired-like homeobox 2a [Homo sapiens] 79 3e-15
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 79 4e-15
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 79 4e-15
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 77 1e-14
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 77 1e-14
gi|4557489 cone-rod homeobox protein [Homo sapiens] 77 1e-14
gi|14149760 orthopedia homeobox [Homo sapiens] 77 1e-14
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 474 bits (1221), Expect = e-134
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 60
MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP
Sbjct: 1 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP 60
Query: 61 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 120
GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA
Sbjct: 61 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 120
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD 180
ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD
Sbjct: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD 180
Query: 181 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 232
VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF
Sbjct: 181 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF 232
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 92.0 bits (227), Expect = 4e-19
Identities = 57/136 (41%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 14 GAAFPAYRAPHAGGALLPPPSPAAALLPAPP-AGPGPATFAGFLGRDPGPAPPPPASLGS 72
GA +AP G PPP+PA PAP P P + ++PG A P P
Sbjct: 68 GARPACPKAPEEGSEPSPPPAPA----PAPEYEAPRP-----YCPKEPGEARPSPGLPVG 118
Query: 73 PAPPKGAAA----PSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPES 128
PA + + P RR RT+F+ QL LE F ++ YPD++ RE LA LPE
Sbjct: 119 PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEV 178
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWFQNRRAK RRQ
Sbjct: 179 RVQVWFQNRRAKWRRQ 194
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 8 ALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPPP 67
ALQ G PA P A PP P L +PP GPG APPPP
Sbjct: 256 ALQSLPGFGPPAQSLP----ASYTPPPPPPPFLNSPPLGPGLQPL----------APPPP 301
Query: 68 A 68
+
Sbjct: 302 S 302
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 195 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 254
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 255 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 308
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 309 TSYQPTSIPQAVSDPSS 325
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 196 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 310 TSYQPTSIPQAVSDPSS 326
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 196 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 310 TSYQPTSIPQAVSDPSS 326
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 196 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 310 TSYQPTSIPQAVSDPSS 326
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 196 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 310 TSYQPTSIPQAVSDPSS 326
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/137 (39%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 63 APPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAAL 122
A P + GS + QRR RT+F+AEQL+ LE F RT YPDI+ RE LA
Sbjct: 196 ASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
Query: 123 TLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVN 182
L E+R+QVWF NRRA+ R+Q+G A + NH PG P LP
Sbjct: 256 AKLTEARVQVWFSNRRARWRKQAG------ANQLMAFNHLIPGGFPPTAMPTLPTYQLSE 309
Query: 183 CLPEPNGVGGGISDSSS 199
+P + +SD SS
Sbjct: 310 TSYQPTSIPQAVSDPSS 326
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 84.7 bits (208), Expect = 6e-17
Identities = 61/148 (41%), Positives = 69/148 (46%), Gaps = 31/148 (20%)
Query: 32 PPSPAAALLPAPPAGPG----------------------PATFAGFLGRDPGP---APPP 66
PP PA PA P PG P AG R P P
Sbjct: 41 PPQPAGRQSPAKPEEPGAPEAAPCACCCCCGPRAAPCGPPEAAAGLGARLAWPLRLGPAV 100
Query: 67 PASLGSPAPPKGA---AAPSASQRRKR---TSFSAEQLQLLELVFRRTRYPDIHLRERLA 120
P SLG+PA GA A SQRR R T FS EQLQ LE +F + +YPD+ RERLA
Sbjct: 101 PLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLA 160
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQSGKS 148
L E R++VWF+NRRAK R Q S
Sbjct: 161 GRIRLREERVEVWFKNRRAKWRHQKRAS 188
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 84.3 bits (207), Expect = 8e-17
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 86 QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F+AEQL+ LE F RT YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 217 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 276
Query: 146 GKSFQPLARPEIILNHCAPGTETKCLKPQLP 176
G A NH PG P LP
Sbjct: 277 G------ANQLAAFNHLLPGGFPPTGMPTLP 301
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 84.3 bits (207), Expect = 8e-17
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 86 QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F+AEQL+ LE F RT YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 215 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 274
Query: 146 GKSFQPLARPEIILNHCAPGTETKCLKPQLP 176
G A NH PG P LP
Sbjct: 275 G------ANQLAAFNHLLPGGFPPTGMPTLP 299
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 84.3 bits (207), Expect = 8e-17
Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 86 QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQS 145
QRR RT+F+AEQL+ LE F RT YPDI+ RE LA T L E+R+QVWF NRRA+ R+Q+
Sbjct: 217 QRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQA 276
Query: 146 GKSFQPLARPEIILNHCAPGTETKCLKPQLP 176
G A NH PG P LP
Sbjct: 277 G------ANQLAAFNHLLPGGFPPTGMPTLP 301
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 84.0 bits (206), Expect = 1e-16
Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Query: 69 SLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPES 128
S+G PA P+ QRR+RT+F+ QL +LE +F +TRYPDI +RE +A LPES
Sbjct: 28 SVGYPATPR-------KQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPES 80
Query: 129 RIQVWFQNRRAKSRRQSGKSFQPLARP 155
R+QVWF+NRRAK R+Q +RP
Sbjct: 81 RVQVWFKNRRAKCRQQQQSGSGTKSRP 107
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 84.0 bits (206), Expect = 1e-16
Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 44 PAGPGPATFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPSA-SQRRKRTSFSAEQLQLLE 102
P GPG + GP + G PPK S+RR RT+F+ EQL LE
Sbjct: 49 PEGPG----------EEGPGEAAASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELE 98
Query: 103 LVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+F T YPD+H+R +LAA LPE+R+Q+WFQN+RAK R+Q
Sbjct: 99 KIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQ 140
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 82.8 bits (203), Expect = 2e-16
Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 69 SLGSPAPPKGAAAPSAS---QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLL 125
S+G P P A+ P+A+ QRR+RT+F+ QL +LE +F +TRYPDI +RE +A L
Sbjct: 28 SVGYPGP--WASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 85
Query: 126 PESRIQVWFQNRRAKSRRQ 144
PESR+QVWF+NRRAK R+Q
Sbjct: 86 PESRVQVWFKNRRAKCRQQ 104
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 82.4 bits (202), Expect = 3e-16
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 73 PAPPKGAAAP-SASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQ 131
P+P +G+AA QRR RT+F++ QLQ LE VF RT YPD +RE LA L E+R+Q
Sbjct: 90 PSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQ 149
Query: 132 VWFQNRRAKSRR 143
VWFQNRRAK RR
Sbjct: 150 VWFQNRRAKFRR 161
>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
Length = 226
Score = 82.0 bits (201), Expect = 4e-16
Identities = 50/114 (43%), Positives = 57/114 (50%)
Query: 74 APPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVW 133
+P G S+RR RT+FS QL+ LE F R +YPDI RE LA T L E+RIQVW
Sbjct: 57 SPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLARDTGLSEARIQVW 116
Query: 134 FQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVDVNCLPEP 187
FQNRRAK R+Q QPLA T C V C P P
Sbjct: 117 FQNRRAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPVTCFPHP 170
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 82.0 bits (201), Expect = 4e-16
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 7/76 (9%)
Query: 69 SLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPES 128
S+G PA P+ QRR+RT+F+ QL +LE +F +TRYPDI +RE +A LPES
Sbjct: 28 SVGYPATPR-------KQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPES 80
Query: 129 RIQVWFQNRRAKSRRQ 144
R+QVWF+NRRAK R+Q
Sbjct: 81 RVQVWFKNRRAKCRQQ 96
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 81.6 bits (200), Expect = 5e-16
Identities = 62/159 (38%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 46 GPGPATFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVF 105
G GPAT G LG G AP RR RT+F+ QL LE F
Sbjct: 6 GEGPATEGGGLG-------------------PGEEAPKKKHRRNRTTFTTYQLHQLERAF 46
Query: 106 RRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ------SGKSFQPLARPEIIL 159
+ YPD++ RE LAA LPE R+QVWFQNRRAK RRQ SG P L
Sbjct: 47 EASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPAL 106
Query: 160 NHCAPGTETKCLKPQL-PLEVDVNCLPEPNGVGGGISDS 197
P + L+P L P V LP G G G+ S
Sbjct: 107 PFARPPAMSLPLEPWLGPGPPAVPGLPRLLGPGPGLQAS 145
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 80.9 bits (198), Expect = 9e-16
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 86 QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F+A+QL+ LE F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 71 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 129
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 80.9 bits (198), Expect = 9e-16
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 86 QRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
QRR RT+F+A+QL+ LE F++T YPD+ +RERLA T LPE+R+QVWF+NRRAK R++
Sbjct: 66 QRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKK 124
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 80.5 bits (197), Expect = 1e-15
Identities = 63/179 (35%), Positives = 76/179 (42%), Gaps = 58/179 (32%)
Query: 22 APHAGGALLPPPSPAAALLPA-------------PPA------GPGPATFAGFLGRDP-- 60
APH A PP P PA PPA GPGPA G P
Sbjct: 35 APHLHPA--PPRGPRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHFYEGPAE 92
Query: 61 --------------------GPAPPPPASLGSPAP-------PKGAAAPSASQ------- 86
GP P GSP P P P + +
Sbjct: 93 AEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSK 152
Query: 87 -RRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
RR RT+FS QL+ LE VF++T YPD++ RE+LA T L E+R+QVWFQNRRAK R++
Sbjct: 153 KRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 211
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 79.7 bits (195), Expect = 2e-15
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 61 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA 120
GP + L SP + + +RR RT+F++ QL+ LE VF++T YPD++ RE+LA
Sbjct: 189 GPQDRASSDLPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLA 248
Query: 121 ALTLLPESRIQVWFQNRRAKSRRQ 144
T L E+R+QVWFQNRRAK R++
Sbjct: 249 MRTDLTEARVQVWFQNRRAKWRKR 272
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 79.0 bits (193), Expect = 3e-15
Identities = 50/121 (41%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 26 GGALLPPPSPA--AALLPAPPAGPGPATFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPS 83
GG P PA AA P P G P P P P
Sbjct: 31 GGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPYSAVPYKF---FPEPSGLHEK 87
Query: 84 ASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRR 143
QRR RT+F++ QL+ LE VF T YPDI+ RE LA L E+R+QVWFQNRRAK R+
Sbjct: 88 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 147
Query: 144 Q 144
Q
Sbjct: 148 Q 148
Score = 32.7 bits (73), Expect = 0.27
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 23 PHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPP--------PASLGSPA 74
P + +L PPP+P A +P P P A G PGP P P A G
Sbjct: 186 PDSTASLPPPPAPGLA---SPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGG 242
Query: 75 PPKGAA 80
P GAA
Sbjct: 243 PGAGAA 248
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 25 AGGALLPPPSPAAALLPA-PPAGPGPATFAGFLG---RDPGPA 63
AGG P + AA LL A PA GP F+G L R PGPA
Sbjct: 236 AGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPA 278
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 78.6 bits (192), Expect = 4e-15
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 29 LLPPPSPAAALLPA----PPAGP--------GPATFAGFLGRDPGPAPPPPASLGSPAPP 76
L PPP P + PA PA P ++ ++ G P P G+
Sbjct: 17 LRPPPPPPHDMGPAFHLARPADPREPLENSASESSDTELPEKERGGEPKGPEDSGAGGTG 76
Query: 77 KGAA---APSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVW 133
G A A QRR+RT F+++QLQ LE F+R RYPD+ +RE +A T L E R++VW
Sbjct: 77 CGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVW 136
Query: 134 FQNRRAKSRRQ 144
F+NRRAK R++
Sbjct: 137 FKNRRAKWRKR 147
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 78.6 bits (192), Expect = 4e-15
Identities = 53/122 (43%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 30 LPP--PSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPPPASLGSPAPPKG--AAAPSAS 85
LPP P PAA P P+ P PA LGR + S + + A+P+
Sbjct: 109 LPPRGPEPAA---PLAPSRPPPA-----LGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG 160
Query: 86 QRRKR---TSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSR 142
+R+KR T F+A QL+ LE F YPD++ RE LA T LPE RIQVWFQNRRAK R
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWR 220
Query: 143 RQ 144
++
Sbjct: 221 KR 222
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 77.0 bits (188), Expect = 1e-14
Identities = 46/111 (41%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 34 SPAAALLPAPPAGPGPATFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPSASQRRKRTSF 93
SPA +L A P G G++ + ASL +P G+ QRR+RT F
Sbjct: 13 SPALSLSDAGTPHPQLPEH-GCKGQEHSDSEKASASLPGGSPEDGSL--KKKQRRQRTHF 69
Query: 94 SAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAKSRRQ 144
+++QLQ LE F+R RYPD+ RE +A T L E+R++VWF+NRRAK R++
Sbjct: 70 TSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 120
Score = 37.4 bits (85), Expect = 0.011
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 31 PPPSPAAALLP----APPAGPGPATFAGFLGRDPGPAPPPPAS------LGSPAPPKGAA 80
PP S AA+++P AP PGP G G PG AP +S S A AA
Sbjct: 190 PPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAA 249
Query: 81 APSASQRRKRTSFSAEQLQLLELVFRRTRYPDIH 114
A S R + S L+L YP +H
Sbjct: 250 ASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVH 283
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 77.0 bits (188), Expect = 1e-14
Identities = 53/124 (42%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 27 GALLPPPSPA--AALLPAPP---AGPGPATFAGFLGRDPGPAPPPPASLGSPAPPK-GAA 80
G L P P A LLP G PA+ A +DP P P G P P + G
Sbjct: 43 GDLAPNSDPVEGATLLPGEDITTVGSTPASLA-VSAKDPDKQPGPQ---GGPNPSQAGQQ 98
Query: 81 APSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAK 140
Q+R RT F+ QL LE F +T YPDI +RE LA L ESR+QVWFQNRRAK
Sbjct: 99 QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158
Query: 141 SRRQ 144
+++
Sbjct: 159 WKKR 162
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 77.0 bits (188), Expect = 1e-14
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 82 PSA--SQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRA 139
PSA QRR+RT+F+ QL+ LE +F +T+YPD++ RE +A LPESR+QVWF+NRRA
Sbjct: 33 PSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRA 92
Query: 140 KSRRQSGKSFQPLARP 155
K R+Q + Q P
Sbjct: 93 KCRQQRQQQKQQQQPP 108
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 77.0 bits (188), Expect = 1e-14
Identities = 53/124 (42%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 27 GALLPPPSPA--AALLPAPP---AGPGPATFAGFLGRDPGPAPPPPASLGSPAPPK-GAA 80
G L P P A LLP G PA+ A +DP P P G P P + G
Sbjct: 43 GDLAPNSDPVEGATLLPGEDITTVGSTPASLA-VSAKDPDKQPGPQ---GGPNPSQAGQQ 98
Query: 81 APSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLLPESRIQVWFQNRRAK 140
Q+R RT F+ QL LE F +T YPDI +RE LA L ESR+QVWFQNRRAK
Sbjct: 99 QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158
Query: 141 SRRQ 144
+++
Sbjct: 159 WKKR 162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,414,197
Number of Sequences: 37866
Number of extensions: 875130
Number of successful extensions: 20883
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 1217
Number of HSP's that attempted gapping in prelim test: 9168
Number of HSP's gapped (non-prelim): 8773
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.