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Search of human proteins with 7661916
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7661916 lysosomal protein transmembrane 4 alpha [Homo
sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens] 483 e-137
gi|30409982 lysosomal associated transmembrane protein 4 beta [H... 211 3e-55
gi|5803056 lysosomal multispanning membrane protein 5 [Homo sapi... 77 1e-14
gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens] 33 0.16
gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens] 33 0.16
gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens] 31 0.79
gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens] 31 0.79
gi|4504681 interleukin 8 receptor alpha [Homo sapiens] 31 1.0
gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4 (transme... 31 1.0
gi|153792074 proline rich 12 [Homo sapiens] 30 1.8
gi|226342941 zinc finger, DHHC-type containing 15 isoform 2 [Hom... 30 2.3
gi|21450653 zinc finger, DHHC-type containing 15 isoform 1 [Homo... 30 2.3
gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens] 30 2.3
gi|45505163 LISCH protein isoform 1 [Homo sapiens] 29 3.0
gi|21264578 tetraspan 1 [Homo sapiens] 29 3.9
gi|45545424 LISCH protein isoform 2 [Homo sapiens] 29 3.9
gi|110349719 titin isoform N2-A [Homo sapiens] 28 5.2
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 28 6.7
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 28 6.7
gi|24497515 homeobox A3 isoform b [Homo sapiens] 28 8.8
gi|24497513 homeobox A3 isoform a [Homo sapiens] 28 8.8
gi|13562112 homeobox A3 isoform a [Homo sapiens] 28 8.8
gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens] 28 8.8
gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens] 28 8.8
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 28 8.8
gi|154448890 THO complex 1 [Homo sapiens] 28 8.8
>gi|7661916 lysosomal protein transmembrane 4 alpha [Homo sapiens]
Length = 233
Score = 483 bits (1243), Expect = e-137
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV
Sbjct: 1 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA
Sbjct: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
>gi|30409982 lysosomal associated transmembrane protein 4 beta [Homo
sapiens]
Length = 317
Score = 211 bits (538), Expect = 3e-55
Identities = 101/229 (44%), Positives = 146/229 (63%), Gaps = 19/229 (8%)
Query: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ QY N+ S
Sbjct: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148
Query: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208
Query: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
VAI+ L Y I+EY+ QLP +FPY+DD+++++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268
Query: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
NCY+YIN RN ++ VY + P + V KEPPPPY+ A
Sbjct: 269 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVSA 317
>gi|5803056 lysosomal multispanning membrane protein 5 [Homo
sapiens]
Length = 262
Score = 77.0 bits (188), Expect = 1e-14
Identities = 65/260 (25%), Positives = 106/260 (40%), Gaps = 61/260 (23%)
Query: 20 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SMPAVNIQYEVIGNYYSSERMAD 78
C C +VR T L +++++++L+ I +VEV H S + Y I + SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----- 66
Query: 79 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIK 138
F + ++FIIS L+ G + + +L+PF ++ D++L L + S LP
Sbjct: 67 -----FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYL 121
Query: 139 EYLD--------------QLPDF-----------------------------PYKDDLLA 155
+ QL DF P ++D+
Sbjct: 122 KLASRSRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPH 181
Query: 156 LDSSCLLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTY 215
++ I + F +IFK Y+ CVW CY+ I N + + + VLP+Y
Sbjct: 182 NQFIKMMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMN--SVEEKRNSKMLQKVVLPSY 239
Query: 216 EMAVKMPEKEP-----PPPY 230
E A+ +P K P PPPY
Sbjct: 240 EEALSLPSKTPEGGPAPPPY 259
>gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 107 GWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVL 166
G L F F ++ CLV + +L L + LD P K++ A+ + +L
Sbjct: 90 GMLRKLFSSHRFQVIIICLVVLDALLVLAEL--ILDLKIIQPDKNNYAAMVFHYMSITIL 147
Query: 167 VFFALFIIFKAYLINCVWNCYKY 189
VFF + IIFK ++ + +K+
Sbjct: 148 VFFMMEIIFKLFVFRLEFFHHKF 170
>gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 107 GWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVL 166
G L F F ++ CLV + +L L + LD P K++ A+ + +L
Sbjct: 90 GMLRKLFSSHRFQVIIICLVVLDALLVLAEL--ILDLKIIQPDKNNYAAMVFHYMSITIL 147
Query: 167 VFFALFIIFKAYLINCVWNCYKY 189
VFF + IIFK ++ + +K+
Sbjct: 148 VFFMMEIIFKLFVFRLEFFHHKF 170
>gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens]
Length = 342
Score = 31.2 bits (69), Expect = 0.79
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPY 230
N Y N + Y F P Y+LP YE V P PPPPY
Sbjct: 80 NLIAYREAHNYSALPFY--FRFLPNYLLPPYEEVVNRP-PTPPPPY 122
>gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens]
Length = 363
Score = 31.2 bits (69), Expect = 0.79
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPY 230
N Y N + Y F P Y+LP YE V P PPPPY
Sbjct: 101 NLIAYREAHNYSALPFY--FRFLPNYLLPPYEEVVNRP-PTPPPPY 143
>gi|4504681 interleukin 8 receptor alpha [Homo sapiens]
Length = 350
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 30 IILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERM 76
+ LG W + +NL + L + HPN+ V YEV+GN + RM
Sbjct: 156 VCLGCWGLSMNLSLPFFLFRQAYHPNNSSPV--CYEVLGNDTAKWRM 200
>gi|13129074 proline rich Gla (G-carboxyglutamic acid) 4
(transmembrane) [Homo sapiens]
Length = 226
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 167 VFFALFIIFKAYLINCVWNCYK---------YINNRNVPEIAVYPAFEA-----PPQYV- 211
VF +F + YL C+ C + Y R+ P I EA PP
Sbjct: 126 VFLVIFGLLGYYL--CITKCNRLQHPCSSAVYERGRHTPSIIFRRPEEAALSPLPPSVED 183
Query: 212 --LPTYEMAVKMPEK---EPPPPY 230
LP+YE AV + K PPPPY
Sbjct: 184 AGLPSYEQAVALTRKHSVSPPPPY 207
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 1.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 202 PAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
PA +PP V PT P PPPP +P+
Sbjct: 1480 PALPSPPPLVAPTPSSPPPPPLPPPPPPAMPS 1511
>gi|226342941 zinc finger, DHHC-type containing 15 isoform 2 [Homo
sapiens]
Length = 328
Score = 29.6 bits (65), Expect = 2.3
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 112 FFCYRLFDFVLSCL-VAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFA 170
FF L VL CL +A + +Y IK + +LP K +L L LF+ +FF
Sbjct: 164 FFLQFLAYSVLYCLYIATTVFSYF--IKYWRGELPSVRSKFHVLFL-----LFVACMFFV 216
Query: 171 LFIIFKAYLINCVWNCYKYINNRNVPEIAVYPAFEAPPQ 209
+I Y +C+ N+ E P F + P+
Sbjct: 217 SLVILFGY------HCWLVSRNKTTLEAFCTPVFTSGPE 249
>gi|21450653 zinc finger, DHHC-type containing 15 isoform 1 [Homo
sapiens]
Length = 337
Score = 29.6 bits (65), Expect = 2.3
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 112 FFCYRLFDFVLSCL-VAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFA 170
FF L VL CL +A + +Y IK + +LP K +L L LF+ +FF
Sbjct: 173 FFLQFLAYSVLYCLYIATTVFSYF--IKYWRGELPSVRSKFHVLFL-----LFVACMFFV 225
Query: 171 LFIIFKAYLINCVWNCYKYINNRNVPEIAVYPAFEAPPQ 209
+I Y +C+ N+ E P F + P+
Sbjct: 226 SLVILFGY------HCWLVSRNKTTLEAFCTPVFTSGPE 258
>gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 77 ADNACVLFAVSVLMFIISSMLVYGAISYQVGWL-------IPFFCYRLF--DFVLSCLVA 127
+ A +F V ++F++ S++ +S ++ WL + + C F +FVL L
Sbjct: 205 SSTAARIFGVISIIFVVVSIINMALMSAELSWLDLQLLEILEYVCISWFTGEFVLRFLCV 264
Query: 128 ISSLTYLPRIKEYLDQLPDFPYKDDLL 154
+L ++ +D L P+ LL
Sbjct: 265 RDRCRFLRKVPNIIDLLAILPFYITLL 291
>gi|45505163 LISCH protein isoform 1 [Homo sapiens]
Length = 630
Score = 29.3 bits (64), Expect = 3.0
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 23/94 (24%)
Query: 152 DLLALDSSCLLFIVLVFFALFIIFKAYLINCVW------NCYKYINNRNVPE-----IAV 200
+L+ LD LF+V+V A F+IF L+ W C Y+ P+ A+
Sbjct: 235 ELIVLD---WLFVVVVCLAAFLIF--LLLGICWCQCCPHTCCCYVRCPCCPDKCCCPEAL 289
Query: 201 YPAFEA-----PPQYVLPTYEMAVKMPEKEPPPP 229
Y A +A P Y TY A P K PPPP
Sbjct: 290 YAAGKAATSGVPSIYAPSTY--AHLSPAKTPPPP 321
>gi|21264578 tetraspan 1 [Homo sapiens]
Length = 241
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 83 LFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLD 142
L A V++F + + YGA + L+ FF L F+ A+ +L Y + +L
Sbjct: 60 LIAAGVVVFALGFLGCYGAKTESKCALVTFFFILLLIFIAEVAAAVVALVYTTMAEHFLT 119
Query: 143 QL 144
L
Sbjct: 120 LL 121
>gi|45545424 LISCH protein isoform 2 [Homo sapiens]
Length = 649
Score = 28.9 bits (63), Expect = 3.9
Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 32/122 (26%)
Query: 127 AISSLTYLPRIKEYLDQLPDF---PYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCV 183
A + L L R + LP F P +D LF+V+V A F+IF L+
Sbjct: 232 AYAELIVLGRTSGVAELLPGFQAGPIED---------WLFVVVVCLAAFLIF--LLLGIC 280
Query: 184 W------NCYKYINNRNVPE-----IAVYPAFEA-----PPQYVLPTYEMAVKMPEKEPP 227
W C Y+ P+ A+Y A +A P Y TY A P K PP
Sbjct: 281 WCQCCPHTCCCYVRCPCCPDKCCCPEALYAAGKAATSGVPSIYAPSTY--AHLSPAKTPP 338
Query: 228 PP 229
PP
Sbjct: 339 PP 340
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.5 bits (62), Expect = 5.2
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 188 KYINNRNVPEIAVYPAFEAPPQYVL----PTYEMAVKMPEK-EPPPPYLP 232
K I + VPE V +APP VL P ++ V +P+K +PPPP +P
Sbjct: 9791 KPIPVKPVPEEPVPTKPKAPPAKVLKKAVPEEKVPVPIPKKLKPPPPKVP 9840
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 28.1 bits (61), Expect = 6.7
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 131 LTYLPRIKEYLDQLPDFPYKDD---------LLALDSSCLLFIVLVFFALFIIFKAYLIN 181
L + ++E L L D P D ++AL +LF++ V A+ + + L
Sbjct: 662 LVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSP 721
Query: 182 CVWNCYKYINNRNVPEIAVYPAFEAPPQY 210
W+C+ P + V PP Y
Sbjct: 722 ATWDCFH-------PGLCVKSGPVVPPNY 743
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 28.1 bits (61), Expect = 6.7
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 131 LTYLPRIKEYLDQLPDFPYKDD---------LLALDSSCLLFIVLVFFALFIIFKAYLIN 181
L + ++E L L D P D ++AL +LF++ V A+ + + L
Sbjct: 662 LVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSP 721
Query: 182 CVWNCYKYINNRNVPEIAVYPAFEAPPQY 210
W+C+ P + V PP Y
Sbjct: 722 ATWDCFH-------PGLCVKSGPVVPPNY 743
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 27.7 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 202 PAFEAPPQ--YVLPTYEMAVKMPEKEPPPP 229
P F PPQ Y LP +P PPPP
Sbjct: 137 PPFSKPPQGTYGLPPASYPASLPSCAPPPP 166
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 202 PAFEAPPQ--YVLPTYEMAVKMPEKEPPPP 229
P F PPQ Y LP +P PPPP
Sbjct: 295 PPFSKPPQGTYGLPPASYPASLPSCAPPPP 324
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 27.7 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 202 PAFEAPPQ--YVLPTYEMAVKMPEKEPPPP 229
P F PPQ Y LP +P PPPP
Sbjct: 295 PPFSKPPQGTYGLPPASYPASLPSCAPPPP 324
>gi|33239443 synaptophysin-like 1 isoform b [Homo sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 8.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 58 PAVNI------QYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVY 99
P VNI Y +IG+Y SS + V FAV V ++ I+++L+Y
Sbjct: 75 PGVNICDVNWKDYVLIGDYSSSAQFY----VTFAVFVFLYCIAALLLY 118
>gi|5803185 synaptophysin-like 1 isoform a [Homo sapiens]
Length = 259
Score = 27.7 bits (60), Expect = 8.8
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 10/48 (20%)
Query: 58 PAVNI------QYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVY 99
P VNI Y +IG+Y SS + V FAV V ++ I+++L+Y
Sbjct: 93 PGVNICDVNWKDYVLIGDYSSSAQFY----VTFAVFVFLYCIAALLLY 136
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 27.7 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 209 QYVLPTYEMAVKMPEKEPPPPYLP 232
Q + E AV +P+ EPPPP +P
Sbjct: 235 QQAVVVAEAAVTIPKPEPPPPVVP 258
>gi|154448890 THO complex 1 [Homo sapiens]
Length = 657
Score = 27.7 bits (60), Expect = 8.8
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPE----------KEPPPP 229
N V N YK +NN N A+ P + PT + +PE KE PPP
Sbjct: 478 NMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPP 536
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.143 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,026,175
Number of Sequences: 37866
Number of extensions: 372681
Number of successful extensions: 1794
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1771
Number of HSP's gapped (non-prelim): 55
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.