Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRC14 Sequence: fasta or formatted (493aa) NCBI GI: 7661860
Description:

leucine rich repeat containing 14

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         49           2
 C cysteine            3.0         15           2
 D aspartate           4.7         23           2
 E glutamate           5.3         26           2
 F phenylalanine       3.7         18           1
 G glycine             5.3         26           2
 H histidine           3.0         15           1
 I isoleucine          1.6          8           2
 K lysine              1.6          8           2
 L leucine            19.1         94           3
 M methionine          2.0         10           1
 N asparagine          1.6          8           2
 P proline             6.1         30           3
 Q glutamine           5.7         28           3
 R arginine            7.5         37           2
 S serine              7.1         35           2
 T threonine           4.7         23           2
 V valine              5.7         28           2
 W tryptophan          0.8          4           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 14 
LOC389257             0.190   hypothetical protein LOC389257 
PRAME                 0.168   preferentially expressed antigen in melanoma 
PRAME                 0.168   preferentially expressed antigen in melanoma 
PRAME                 0.168   preferentially expressed antigen in melanoma 
PRAME                 0.168   preferentially expressed antigen in melanoma 
PRAME                 0.168   preferentially expressed antigen in melanoma 
PRAMEF6               0.159   PRAME family member 6 
PRAMEF5               0.157   PRAME family member 5 
PRAMEF23              0.154   PREDICTED: PRAME family member 23 
PRAMEF4               0.153   PRAME family member 4 
PRAMEL                0.153   PREDICTED: preferentially expressed antigen in mela...
PRAMEL                0.153   PREDICTED: preferentially expressed antigen in mela...
PRAMEF15              0.153   PRAME family member 15 
PRAMEF9               0.153   PRAME family member 9 
PRAMEF11              0.151   PREDICTED: PRAME family member 11 
PRAMEL                0.151   PREDICTED: preferentially expressed antigen in mela...
PRAMEF20              0.148   PRAME family member 20 
PRAMEF21              0.148   PRAME family member 21 
PRAMEF7               0.146   PRAME family member 7 
LOC729516             0.146   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.146   PRAME family member 8 
PRAMEF12              0.140   PRAME family member 12 
PRAMEF25              0.133   PREDICTED: PRAME family member 25-like 
PRAMEF11              0.130   PRAME family member 11 
LOC645359             0.119   PREDICTED: PRAME family member 
PRAMEF18              0.103   PRAME family member 18 
PRAMEF3               0.102   PRAME family member 3 
PRAMEF22              0.099   PRAME family member 22 
PRAMEF19              0.099   PRAME family member 19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press