Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 7657405

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
         (170 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7657405 odorant binding protein 2A precursor [Homo sapiens]        347   4e-96
gi|7657407 odorant binding protein 2B [Homo sapiens]                  310   5e-85
gi|4504963 lipocalin 1 precursor [Homo sapiens]                       143   8e-35
gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]           46   2e-05
gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]           46   2e-05
gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]           46   2e-05
gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]                39   0.002
gi|65507519 glycodelin precursor [Homo sapiens]                        37   0.011
gi|65507501 glycodelin precursor [Homo sapiens]                        37   0.011
gi|48717447 lipocalin 9 [Homo sapiens]                                 35   0.031
gi|148226288 lipocalin-like 1 [Homo sapiens]                           33   0.15 
gi|38455402 lipocalin 2 [Homo sapiens]                                 32   0.20 
gi|126116598 lipocalin 10 [Homo sapiens]                               32   0.34 
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom...    30   1.0  
gi|167857790 orosomucoid 1 precursor [Homo sapiens]                    28   2.9  
gi|41872631 fatty acid synthase [Homo sapiens]                         28   3.8  
gi|62988357 lipocalin 8 [Homo sapiens]                                 28   3.8  
gi|89886464 lipocalcin 12 [Homo sapiens]                               27   8.5  
gi|7657359 contactin 5 isoform long [Homo sapiens]                     27   8.5  
gi|28373129 contactin 5 isoform short [Homo sapiens]                   27   8.5  
gi|31742492 Nedd4 binding protein 2 [Homo sapiens]                     27   8.5  
gi|40018629 hypothetical protein LOC23325 [Homo sapiens]               27   8.5  

>gi|7657405 odorant binding protein 2A precursor [Homo sapiens]
          Length = 170

 Score =  347 bits (889), Expect = 4e-96
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
           MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG
Sbjct: 1   MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60

Query: 61  NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120
           NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG
Sbjct: 61  NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120

Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
           GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH
Sbjct: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170


>gi|7657407 odorant binding protein 2B [Homo sapiens]
          Length = 170

 Score =  310 bits (793), Expect = 5e-85
 Identities = 153/170 (90%), Positives = 158/170 (92%)

Query: 1   MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60
           MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG
Sbjct: 1   MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGG 60

Query: 61  NLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYCKDQRRG 120
            LEATFTFMREDRCIQKKILMRKTEEPGK+SAYGGRKL+YLQELP  D Y+FYCKDQ  G
Sbjct: 61  KLEATFTFMREDRCIQKKILMRKTEEPGKYSAYGGRKLMYLQELPRRDHYIFYCKDQHHG 120

Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
           GL +MGKLVGRN +TN EALEEFKKLVQ KGLSEEDIF PLQTGSCV EH
Sbjct: 121 GLLHMGKLVGRNSDTNREALEEFKKLVQRKGLSEEDIFTPLQTGSCVPEH 170


>gi|4504963 lipocalin 1 precursor [Homo sapiens]
          Length = 176

 Score =  143 bits (360), Expect = 8e-35
 Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 7/172 (4%)

Query: 1   MKTLFLGVTLGLAAALS----FTLEEE--DITGTWYVKAMVVDKDFPEDRRPRKVSPVKV 54
           MK L L V+LGL AAL        +EE  D++GTWY+KAM VD++FPE      V+P+ +
Sbjct: 1   MKPLLLAVSLGLIAALQAHHLLASDEEIQDVSGTWYLKAMTVDREFPE-MNLESVTPMTL 59

Query: 55  TALGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDYVFYC 114
           T L GGNLEA  T +   RC + K ++ KT+EPGK++A GG+ + Y+      D Y+FYC
Sbjct: 60  TTLEGGNLEAKVTMLISGRCQEVKAVLEKTDEPGKYTADGGKHVAYIIRSHVKDHYIFYC 119

Query: 115 KDQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSC 166
           + +  G      KLVGR+P  NLEALE+F+K    +GLS E I +P Q+ +C
Sbjct: 120 EGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTESILIPRQSETC 171


>gi|169177936 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 4   LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
           L LG+TL  A       A++   +   I+G WY   +  D ++  E+    +V    +  
Sbjct: 6   LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65

Query: 57  LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
           LG  +L    TF     C +  +  + TE+    S  Y G  +I + E    +   FY K
Sbjct: 66  LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121

Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
           + + G    M +L  R P+ + +  E F K  +  G+ +E+IF   +   C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173


>gi|169179152 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 4   LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
           L LG+TL  A       A++   +   I+G WY   +  D ++  E+    +V    +  
Sbjct: 6   LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65

Query: 57  LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
           LG  +L    TF     C +  +  + TE+    S  Y G  +I + E    +   FY K
Sbjct: 66  LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121

Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
           + + G    M +L  R P+ + +  E F K  +  G+ +E+IF   +   C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173


>gi|169181274 PREDICTED: similar to hCG1795014 [Homo sapiens]
          Length = 181

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 12/172 (6%)

Query: 4   LFLGVTLGLAA------ALSFTLEEEDITGTWYVKAMVVD-KDFPEDRRPRKVSPVKVTA 56
           L LG+TL  A       A++   +   I+G WY   +  D ++  E+    +V    +  
Sbjct: 6   LCLGLTLVCAQEEENNDAVTSNFDLSKISGEWYSVLLASDCREKIEEDGSMRVFVKHIDY 65

Query: 57  LGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDYVFYCK 115
           LG  +L    TF     C +  +  + TE+    S  Y G  +I + E    +   FY K
Sbjct: 66  LGNSSL----TFKLNGNCTEINLACKPTEKNAICSTDYNGLNVIDILETDYDNYIYFYNK 121

Query: 116 DQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
           + + G    M +L  R P+ + +  E F K  +  G+ +E+IF   +   C+
Sbjct: 122 NIKNGETFLMLELYVRTPDVSSQLKERFVKYCEEHGIDKENIFDLTKVDRCL 173


>gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]
          Length = 190

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 6/155 (3%)

Query: 21  EEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALG-GGNLEATFTFMREDRCIQKKI 79
           +++   G W+   +  +  +  +++        V A    G L  T TF+R+++C  + +
Sbjct: 35  QQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQCETRTM 94

Query: 80  LMRKTEEPGKFS----AYGGRKLIYLQELPGTDDYVFYCKDQRRGGLRY-MGKLVGRNPN 134
           L++     G +S     +G    + + E       + Y +  +  G  + M  L  R   
Sbjct: 95  LLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQT 154

Query: 135 TNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLE 169
              E  E+F    + +G +E+ I    QT  C+ E
Sbjct: 155 PRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCMTE 189


>gi|65507519 glycodelin precursor [Homo sapiens]
          Length = 180

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 20  LEEEDITGTWYVKAMVVDKD--FPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQK 77
           LE   + GTW+  AM  +        + P +V    +      NLE        + C++K
Sbjct: 28  LELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEK 87

Query: 78  KILMRKTEEPGKF 90
           K+L  KTE P KF
Sbjct: 88  KVLGEKTENPKKF 100


>gi|65507501 glycodelin precursor [Homo sapiens]
          Length = 180

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 20  LEEEDITGTWYVKAMVVDKD--FPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQK 77
           LE   + GTW+  AM  +        + P +V    +      NLE        + C++K
Sbjct: 28  LELPKLAGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNSCVEK 87

Query: 78  KILMRKTEEPGKF 90
           K+L  KTE P KF
Sbjct: 88  KVLGEKTENPKKF 100


>gi|48717447 lipocalin 9 [Homo sapiens]
          Length = 176

 Score = 35.0 bits (79), Expect = 0.031
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 1   MKTLFLGVTLGLAAALSF---TLEEED-----ITGTWYVKAMVVDK-DFPEDRRPRKVSP 51
           M  L L + L L AA  F   T+ + +     ++G WY   M  D  +  ++    +V  
Sbjct: 1   MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV 60

Query: 52  VKVTALGGGNLEATFTFMREDRCIQKKILMRKTEEPGKFSA-YGGRKLIYLQELPGTDDY 110
             +  L  G+L   F +M +  C+   ++  KTE+ G++S  Y G+  + + E       
Sbjct: 61  RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI 120

Query: 111 VFYCKDQRRG 120
            F+ ++ R G
Sbjct: 121 TFHLQNFRNG 130


>gi|148226288 lipocalin-like 1 [Homo sapiens]
          Length = 164

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 37  DKDFPEDRRPRKVSPVKVTALGGGNLEATFTF-MREDRCIQKKILMRKTEEPGKFSAYGG 95
           D+DF + +   K++ V VT LG G+L   F +      C +      +   PG+FS    
Sbjct: 8   DQDFLDSKDTMKMAVVLVTPLGNGDLALKFGYPTPHGGCQKMDTTFTEGAVPGQFSNPAM 67

Query: 96  RKLIYLQELPGTDDYVFYCKDQRRGGLR------YMGKLVGRNP 133
                         +     + R+GGLR      Y G+  GR P
Sbjct: 68  ALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLYGGRAAGRRP 111


>gi|38455402 lipocalin 2 [Homo sapiens]
          Length = 198

 Score = 32.3 bits (72), Expect = 0.20
 Identities = 36/167 (21%), Positives = 57/167 (34%), Gaps = 23/167 (13%)

Query: 16  LSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCI 75
           L    ++    G WYV  +  +    ED+ P+K+           +   T    R+ +C 
Sbjct: 38  LQQNFQDNQFQGKWYVVGLAGNAILREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCD 97

Query: 76  QKKILMRKTEEPGKFSAYGGRKLIYLQELPGTDDY--------------VFYCK-DQRRG 120
                     +PG+F+      L  ++  PG   Y              VF+ K  Q R 
Sbjct: 98  YWIRTFVPGCQPGEFT------LGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNRE 151

Query: 121 GLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCV 167
             +    L GR      E  E F +  +  GL E  I  P+    C+
Sbjct: 152 YFKIT--LYGRTKELTSELKENFIRFSKSLGLPENHIVFPVPIDQCI 196


>gi|126116598 lipocalin 10 [Homo sapiens]
          Length = 200

 Score = 31.6 bits (70), Expect = 0.34
 Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  SFTLEEEDITGTWYVKAMVVDKDF---PEDRRPRKVSPVKVTALGGGNLEATFTFMREDR 73
           S  L     +G WY+ A   D        D+R    S VKV  +G   L     F R   
Sbjct: 32  SHALNWNKFSGFWYILATATDAQGFLPARDKRKLGASVVKVNKVG--QLRVLLAFRRLKG 89

Query: 74  CIQKKILMRKTEEP---GKFSAYG--------GRKLIYLQELPGTD-DYVFYCKDQRRGG 121
           C  +++++RK  +    G   AY         G K +    +  TD  Y        R  
Sbjct: 90  CQSQEVILRKDGKKPVFGNACAYAAGPREGQEGVKGVKAFHVLSTDYSYGLVYLRLGRAT 149

Query: 122 LRYMGKLVGRNPN-TNLEALEEFKKLVQHKGLSEEDIFMP 160
             Y   L+    N ++ ++L+EF       GLS+  + +P
Sbjct: 150 QNYKNLLLFHRQNVSSFQSLKEFMDACDILGLSKAAVILP 189


>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
           sapiens]
          Length = 541

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 28  TWYVKAMVVDKDFPEDRRPRKVSPVKVTAL 57
           T  +K ++VDKDF   + P+KV   K+  L
Sbjct: 222 TKLIKGVIVDKDFSHPQMPKKVEDAKIAIL 251


>gi|167857790 orosomucoid 1 precursor [Homo sapiens]
          Length = 201

 Score = 28.5 bits (62), Expect = 2.9
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 70  REDRCIQKKILMRKTEEPGKFSAY--GGRKLIYLQELPGTDDYV--FYCKDQRRGGLRYM 125
           R+D+CI     +    E G  S Y  G     +L  L  T  Y+  F   D++  GL   
Sbjct: 86  RQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLLILRDTKTYMLAFDVNDEKNWGL--- 142

Query: 126 GKLVGRNPNTNLEALEEFKKLVQHKGLSEEDI 157
             +    P T  E L EF + +    + + D+
Sbjct: 143 -SVYADKPETTKEQLGEFYEALDCLRIPKSDV 173


>gi|41872631 fatty acid synthase [Homo sapiens]
          Length = 2511

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 49   VSPVKVTALGGGNLEATFTFMREDRCIQKKILMRKTEEP 87
            V P+K T   G  +E  F +M + + I K ++    EEP
Sbjct: 1823 VRPLKCTVFHGAQVEDAFRYMAQGKHIGKVVVQVLAEEP 1861


>gi|62988357 lipocalin 8 [Homo sapiens]
          Length = 152

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 20 LEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQKKI 79
          L+ + I G W    +  D+       P++V  + +T L G NL     +     C  +KI
Sbjct: 4  LDRQKIGGFWREVGVASDQSLVLTA-PKRVEGLFLT-LSGSNLTVKVAYNSSGSCEIEKI 61

Query: 80 LMRKTEEPGKFSAYGGRKL 98
          +  + +  GKF+  G R++
Sbjct: 62 VGSEIDSTGKFAFPGHREI 80


>gi|89886464 lipocalcin 12 [Homo sapiens]
          Length = 192

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 27  GTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMREDRCIQKKILMRKTEE 86
           G W+V  +  +   PE R               G  E      R   C     ++    +
Sbjct: 41  GEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQ 100

Query: 87  PGKFSAYGGRKLIYLQELPGTD---------DYVFYCKDQRRGGLRYMG----KLVGRNP 133
           PG+F+   G +       PG D         DY  +     R     +      L+GR+ 
Sbjct: 101 PGQFTVDHGVE-------PGADREETRVVDSDYTQFALMLSRRHTSRLAVLRISLLGRSW 153

Query: 134 NTNLEALEEFKKLVQHKGLSEEDIFMPLQTG 164
                 L++F  L + +GLS+++I  P  TG
Sbjct: 154 LLPPGTLDQFICLGRAQGLSDDNIVFPDVTG 184


>gi|7657359 contactin 5 isoform long [Homo sapiens]
          Length = 1100

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 12  LAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMRE 71
           L+     TL  + + G +  K   ++  FP      K + VK+     GN   T T+M+ 
Sbjct: 281 LSPPTPLTLRNDGVMGEYEPK---IEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKV 337

Query: 72  DRCIQKKILMRKTE 85
           +  I  K  +RK++
Sbjct: 338 NGYIPSKARLRKSQ 351


>gi|28373129 contactin 5 isoform short [Homo sapiens]
          Length = 1026

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 12  LAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGNLEATFTFMRE 71
           L+     TL  + + G +  K   ++  FP      K + VK+     GN   T T+M+ 
Sbjct: 207 LSPPTPLTLRNDGVMGEYEPK---IEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKV 263

Query: 72  DRCIQKKILMRKTE 85
           +  I  K  +RK++
Sbjct: 264 NGYIPSKARLRKSQ 277


>gi|31742492 Nedd4 binding protein 2 [Homo sapiens]
          Length = 1770

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 22/75 (29%)

Query: 89  KFSAYGGRKLIYLQELPG---------------------TDDYVFYCKDQRRGGLRYMGK 127
           K ++Y G  L+ L+ LPG                     TDDY FY   Q +  ++Y+G+
Sbjct: 433 KKTSYVGLVLVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDY-FYINGQYQFDVKYLGE 491

Query: 128 LVGRNPNTNLEALEE 142
               N N   EA E+
Sbjct: 492 AHEWNQNRAKEAFEK 506


>gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
          Length = 1173

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 113 YCKDQRRGGLRYMGKLVGRNPNTNLEALEEFKKLVQHKGLSEEDIFMPLQTGSCVLEH 170
           Y +  R GGL      +   P+  LE +  F++LV+ +GL+EE +       S + +H
Sbjct: 925 YVRMIRSGGLHCSSNAIRFVPD--LEDIVNFEELVKEEGLAEETLKAARHLDSVLSDH 980


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,626,398
Number of Sequences: 37866
Number of extensions: 292461
Number of successful extensions: 506
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 22
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press