Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OBP2B Sequence: fasta or formatted (170aa) NCBI GI: 7657407
Description:

odorant binding protein 2B

Referenced in:

Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          8           3
 C cysteine            1.8          3           1
 D aspartate           5.3          9           1
 E glutamate           8.8         15           3
 F phenylalanine       4.7          8           1
 G glycine             8.8         15           3
 H histidine           2.9          5           2
 I isoleucine          2.9          5           1
 K lysine              9.4         16           2
 L leucine            11.2         19           2
 M methionine          3.5          6           1
 N asparagine          1.2          2           1
 P proline             4.1          7           1
 Q glutamine           2.9          5           1
 R arginine            7.1         12           2
 S serine              3.5          6           1
 T threonine           7.1         12           1
 V valine              5.9         10           2
 W tryptophan          0.6          1           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   odorant binding protein 2B 
OBP2A                 0.880   odorant binding protein 2A precursor 
LCN1                  0.380   lipocalin 1 precursor 
AMBP                  0.074   alpha-1-microglobulin/bikunin preproprotein 
LOC100129193          0.065   PREDICTED: similar to hCG1795014 
LOC100129193          0.065   PREDICTED: similar to hCG1795014 
LOC100129193          0.065   PREDICTED: similar to hCG1795014 
PTGDS                 0.046   prostaglandin H2 D-isomerase 
LCN9                  0.043   lipocalin 9 
PAEP                  0.025   glycodelin precursor 
PAEP                  0.025   glycodelin precursor 
LCN2                  0.022   lipocalin 2 
LCN10                 0.019   lipocalin 10 
CCT5                  0.015   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
ORM1                  0.015   orosomucoid 1 precursor 
CCDC148               0.012   coiled-coil domain containing 148 
FASN                  0.009   fatty acid synthase 
SERPINH1              0.009   serine (or cysteine) proteinase inhibitor, clade H, ...
MEGF8                 0.009   multiple EGF-like-domains 8 
LRRC4C                0.006   netrin-G1 ligand 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press