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Search of human proteins with 7657373
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657373 tetraspan NET-6 [Homo sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657373 tetraspan NET-6 [Homo sapiens] 416 e-117
gi|5174667 sarcoma amplified sequence [Homo sapiens] 251 2e-67
gi|4502679 CD63 antigen isoform A [Homo sapiens] 65 4e-11
gi|91199546 CD63 antigen isoform B [Homo sapiens] 61 8e-10
gi|68800005 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|4507543 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|68800018 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|68800024 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|68800011 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|68799997 tetraspanin 4 isoform a [Homo sapiens] 61 8e-10
gi|87159824 CD151 antigen [Homo sapiens] 54 7e-08
gi|87159822 CD151 antigen [Homo sapiens] 54 7e-08
gi|21237751 CD151 antigen [Homo sapiens] 54 7e-08
gi|21237748 CD151 antigen [Homo sapiens] 54 7e-08
gi|10834972 CD53 antigen [Homo sapiens] 54 7e-08
gi|91106727 CD53 antigen [Homo sapiens] 54 7e-08
gi|5729941 tetraspanin 9 [Homo sapiens] 54 9e-08
gi|6912528 transmembrane 4 superfamily member 12 [Homo sapiens] 52 3e-07
gi|4759238 transmembrane 4 superfamily member 3 [Homo sapiens] 52 5e-07
gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens] 51 8e-07
gi|50511934 transmembrane 4 superfamily member 17 isoform b [Hom... 51 8e-07
gi|54859560 transmembrane 4 superfamily member 17 isoform a [Hom... 51 8e-07
gi|54859505 transmembrane 4 superfamily member 17 isoform c [Hom... 51 8e-07
gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo ... 50 1e-06
gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens] 49 3e-06
gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens] 47 9e-06
gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens] 47 9e-06
gi|4502693 CD9 antigen [Homo sapiens] 47 1e-05
gi|30425534 tetraspanin 33 [Homo sapiens] 47 1e-05
gi|21265104 tetraspanin 7 [Homo sapiens] 46 2e-05
>gi|7657373 tetraspan NET-6 [Homo sapiens]
Length = 204
Score = 416 bits (1069), Expect = e-117
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA
Sbjct: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
Query: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASARN 120
LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASARN
Sbjct: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASARN 120
Query: 121 DIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGLFFSFTE 180
DIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGLFFSFTE
Sbjct: 121 DIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGLFFSFTE 180
Query: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
ILGVWLTYRYRNQKDPRANPSAFL
Sbjct: 181 ILGVWLTYRYRNQKDPRANPSAFL 204
>gi|5174667 sarcoma amplified sequence [Homo sapiens]
Length = 210
Score = 251 bits (642), Expect = 2e-67
Identities = 121/210 (57%), Positives = 155/210 (73%), Gaps = 6/210 (2%)
Query: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIA 60
MVCGGFACSKN LCALN++Y LVSLLLIG+AAWG G GL+SS+ ++G VIAVG+FL LIA
Sbjct: 1 MVCGGFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIA 60
Query: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVG-WNNTASAR 119
+ GL+GAV HHQVLLFFYMIIL LVFI QF +SC+CLA+N+ +Q ++ W + R
Sbjct: 61 VAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTR 120
Query: 120 NDIQRNLNCCGFRSV-----NPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGIGL 174
++++R+ +CCG ++ D C A C +C C +++ E L+ +GG+GL
Sbjct: 121 DELERSFDCCGLFNLTTLYQQDYDFCTAICKSQSPTCQMCGEKFLKHSDEALKILGGVGL 180
Query: 175 FFSFTEILGVWLTYRYRNQKDPRANPSAFL 204
FFSFTEILGVWL R+RNQKDPRANPSAFL
Sbjct: 181 FFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
>gi|4502679 CD63 antigen isoform A [Homo sapiens]
Length = 238
Score = 65.1 bits (157), Expect = 4e-11
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 4 GGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVG----------VVIAVG 53
GG C K L L L + + +G+ A G+G L+ S ++ V+IAVG
Sbjct: 5 GGMKCVKFLLYVLLLAFCACA---VGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVG 61
Query: 54 IFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCA--------CLALNQEQQG 105
+FLFL+A VG GA K + L+ + I L L+ +V+ + + A N +
Sbjct: 62 VFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQ 121
Query: 106 QLLEVGWNN-TASARNDIQRNLNCCG---------FRSVNPNDTCLASCVKSDHSC---- 151
Q+ NN TAS + +Q + CCG S++ N + C+ C
Sbjct: 122 QMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINF 181
Query: 152 -------SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
C IG + + + V L +F E+LG+
Sbjct: 182 NEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGI 221
>gi|91199546 CD63 antigen isoform B [Homo sapiens]
Length = 236
Score = 60.8 bits (146), Expect = 8e-10
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 22/146 (15%)
Query: 4 GGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVG----------VVIAVG 53
GG C K L L L + + +G+ A G+G L+ S ++ V+IAVG
Sbjct: 5 GGMKCVKFLLYVLLLAFCACA---VGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVG 61
Query: 54 IFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCA--------CLALNQEQQG 105
+FLFL+A VG GA K + L+ + I L L+ +V+ + + A N +
Sbjct: 62 VFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQ 121
Query: 106 QLLEVGWNN-TASARNDIQRNLNCCG 130
Q+ NN TAS + +Q + CCG
Sbjct: 122 QMENYPKNNHTASILDRMQADFKCCG 147
>gi|68800005 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|4507543 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|68800018 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|68800024 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|68800011 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|68799997 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 60.8 bits (146), Expect = 8e-10
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISS----LRVVGVVIAVGIFLFLIAL 61
K + A NLL+ L ++G+ W F +SS L ++I G F+ I
Sbjct: 10 KYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIITGAFVMAIGF 69
Query: 62 VGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQE-----QQ---------GQL 107
VG +GA+K ++ LL + ++LLLVF+++ +++ A + QQ G
Sbjct: 70 VGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQ 129
Query: 108 LEVGWNNTASARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--------- 151
VG N S IQ + CCG F N + C++ SC
Sbjct: 130 GNVGLTNAWSI---IQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWW 186
Query: 152 -SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+PC + + E L VG GL + +ILG+
Sbjct: 187 KAPCYETVKVWLQENLLAVGIFGLCTALVQILGL 220
>gi|87159824 CD151 antigen [Homo sapiens]
Length = 253
Score = 54.3 bits (129), Expect = 7e-08
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 47/230 (20%)
Query: 5 GFACSKNCLCALNLLYTLVSLLLIGIAAWGIGF-----GLISS---LRVVGVVIAVGIFL 56
G C K L N + L L ++ + W + L++S L +++ G +
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVV 71
Query: 57 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE------- 109
+ ++G K + LL Y I+LL++F+++ A Q+ +L E
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMT 131
Query: 110 -----VGWNNTASARNDIQRNLNCCGFRS------------------VNPNDTC---LAS 143
G SA + +Q+ +CCG + V P+ C +A
Sbjct: 132 KRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVAL 191
Query: 144 CVKSDHSCS------PCAPIIGEYAGEVLRFVGGIGLFFSFTEILGVWLT 187
C + DH+ + C + + E LR +G +G+ + ++ G+ T
Sbjct: 192 CGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFT 241
>gi|87159822 CD151 antigen [Homo sapiens]
Length = 253
Score = 54.3 bits (129), Expect = 7e-08
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 47/230 (20%)
Query: 5 GFACSKNCLCALNLLYTLVSLLLIGIAAWGIGF-----GLISS---LRVVGVVIAVGIFL 56
G C K L N + L L ++ + W + L++S L +++ G +
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVV 71
Query: 57 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE------- 109
+ ++G K + LL Y I+LL++F+++ A Q+ +L E
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMT 131
Query: 110 -----VGWNNTASARNDIQRNLNCCGFRS------------------VNPNDTC---LAS 143
G SA + +Q+ +CCG + V P+ C +A
Sbjct: 132 KRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVAL 191
Query: 144 CVKSDHSCS------PCAPIIGEYAGEVLRFVGGIGLFFSFTEILGVWLT 187
C + DH+ + C + + E LR +G +G+ + ++ G+ T
Sbjct: 192 CGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFT 241
>gi|21237751 CD151 antigen [Homo sapiens]
Length = 253
Score = 54.3 bits (129), Expect = 7e-08
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 47/230 (20%)
Query: 5 GFACSKNCLCALNLLYTLVSLLLIGIAAWGIGF-----GLISS---LRVVGVVIAVGIFL 56
G C K L N + L L ++ + W + L++S L +++ G +
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVV 71
Query: 57 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE------- 109
+ ++G K + LL Y I+LL++F+++ A Q+ +L E
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMT 131
Query: 110 -----VGWNNTASARNDIQRNLNCCGFRS------------------VNPNDTC---LAS 143
G SA + +Q+ +CCG + V P+ C +A
Sbjct: 132 KRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVAL 191
Query: 144 CVKSDHSCS------PCAPIIGEYAGEVLRFVGGIGLFFSFTEILGVWLT 187
C + DH+ + C + + E LR +G +G+ + ++ G+ T
Sbjct: 192 CGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFT 241
>gi|21237748 CD151 antigen [Homo sapiens]
Length = 253
Score = 54.3 bits (129), Expect = 7e-08
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 47/230 (20%)
Query: 5 GFACSKNCLCALNLLYTLVSLLLIGIAAWGIGF-----GLISS---LRVVGVVIAVGIFL 56
G C K L N + L L ++ + W + L++S L +++ G +
Sbjct: 12 GTVCLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVV 71
Query: 57 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE------- 109
+ ++G K + LL Y I+LL++F+++ A Q+ +L E
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMT 131
Query: 110 -----VGWNNTASARNDIQRNLNCCGFRS------------------VNPNDTC---LAS 143
G SA + +Q+ +CCG + V P+ C +A
Sbjct: 132 KRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVAL 191
Query: 144 CVKSDHSCS------PCAPIIGEYAGEVLRFVGGIGLFFSFTEILGVWLT 187
C + DH+ + C + + E LR +G +G+ + ++ G+ T
Sbjct: 192 CGQRDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFT 241
>gi|10834972 CD53 antigen [Homo sapiens]
Length = 219
Score = 54.3 bits (129), Expect = 7e-08
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAW-------GIGFGLISSLRVVGVVIAVGIFLFLIALV 62
K L NLL+ + ++G + G+ F + SL + V + VG + ++A +
Sbjct: 10 KYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVGSIIMVVAFL 69
Query: 63 GLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGW---------- 112
G +G++K ++ LL + I+LL++ + + +++ L + +++ + + G
Sbjct: 70 GCMGSIKENKCLLMSFFILLLIILLAEVTLAIL-LFVYEQKLNEYVAKGLTDSIHRYHSD 128
Query: 113 NNTASARNDIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGI 172
N+T +A + IQ L CCG + + + SD C + ++G I
Sbjct: 129 NSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHSNFLYIGII 188
Query: 173 GLFFSFTEILGV 184
+ E+LG+
Sbjct: 189 TICVCVIEVLGM 200
>gi|91106727 CD53 antigen [Homo sapiens]
Length = 219
Score = 54.3 bits (129), Expect = 7e-08
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAW-------GIGFGLISSLRVVGVVIAVGIFLFLIALV 62
K L NLL+ + ++G + G+ F + SL + V + VG + ++A +
Sbjct: 10 KYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVGSIIMVVAFL 69
Query: 63 GLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGW---------- 112
G +G++K ++ LL + I+LL++ + + +++ L + +++ + + G
Sbjct: 70 GCMGSIKENKCLLMSFFILLLIILLAEVTLAIL-LFVYEQKLNEYVAKGLTDSIHRYHSD 128
Query: 113 NNTASARNDIQRNLNCCGFRSVNPNDTCLASCVKSDHSCSPCAPIIGEYAGEVLRFVGGI 172
N+T +A + IQ L CCG + + + SD C + ++G I
Sbjct: 129 NSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHSNFLYIGII 188
Query: 173 GLFFSFTEILGV 184
+ E+LG+
Sbjct: 189 TICVCVIEVLGM 200
>gi|5729941 tetraspanin 9 [Homo sapiens]
Length = 239
Score = 53.9 bits (128), Expect = 9e-08
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 1 MVCGGFACSKNCLCALNLLYTLVSLLLIGIAAW-GIGFGLIS-------SLRVVGVVIAV 52
M G C K + NL++ L L+G+ W + G + SL +VIA+
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 53 GIFLFLIALVGLIGAVKHHQVLLFFYMIILL------LVFIVQFSVSCACLALNQE---Q 103
G + + +G +GA+K ++ LL + I+LL L+ ++ F V + N + +
Sbjct: 61 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLK 120
Query: 104 QGQLLEVGWNNTA--SARNDIQRNLNCCG-------FRSVNPNDTCLASCVKSDHSC--- 151
+G LL NN +A N IQ + CCG + + N C+++ C
Sbjct: 121 EGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 152 -------SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
+ C + + + +G +G+ +ILG+
Sbjct: 181 ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGM 220
>gi|6912528 transmembrane 4 superfamily member 12 [Homo sapiens]
Length = 305
Score = 52.4 bits (124), Expect = 3e-07
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 75/244 (30%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWGIGF-----GLISSLRVV------------GVVI 50
C + L ALNLL+ L+S+ ++ ++AW + L + RV V+I
Sbjct: 9 CLRCLLYALNLLFWLMSISVLAVSAWMRDYLNNVLTLTAETRVEEAVILTYFPVVHPVMI 68
Query: 51 AVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEV 110
AV FL ++ ++G G VK + +LL +Y LL++F V+ AC EQ+ ++ V
Sbjct: 69 AVCCFLIIVGMLGYCGTVKRNLLLLAWYFGSLLVIFCVEL----ACGVWTYEQE-LMVPV 123
Query: 111 GWNN--TASAR----------------NDIQRNLNCCGFRSVN----------PNDTCLA 142
W++ T AR N QR CCG P D+C
Sbjct: 124 QWSDMVTLKARMTNYGLPRYRWLTHAWNFFQREFKCCGVVYFTDWLEMTEMDWPPDSC-- 181
Query: 143 SCVKSDHSCSPCAP-------------------IIGEYAGEVLRFVGGIGLFFSFTEILG 183
CV+ CS A + G +VLRF +G+ T+IL
Sbjct: 182 -CVREFPGCSKQAHQEDLSDLYQEGCGKKMYSFLRGTKQLQVLRF---LGISIGVTQILA 237
Query: 184 VWLT 187
+ LT
Sbjct: 238 MILT 241
>gi|4759238 transmembrane 4 superfamily member 3 [Homo sapiens]
Length = 237
Score = 51.6 bits (122), Expect = 5e-07
Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 45/226 (19%)
Query: 2 VCGGFACSKNCLCALNLLYTLVSLLLIGIAAW-----------GIGFGLISSLRVVGVVI 50
+ G AC K + N L+ L +L++ +A W G SS V ++I
Sbjct: 1 MAGVSACIKYSMFTFNFLFWLCGILILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILI 60
Query: 51 AVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEV 110
AVG + ++ +G GA+K + +L + I LLL+ ++Q + + + E
Sbjct: 61 AVGAIIMILGFLGCCGAIKESRCMLLLFFIGLLLILLLQVATGILGAVFKSKSDRIVNET 120
Query: 111 GWNNT--ASARND-----------IQRNLNCCGFRSVN---------PNDTCLASCVKSD 148
+ NT SA + Q CCG VN + L +C+
Sbjct: 121 LYENTKLLSATGESEKQFQEAIIVFQEEFKCCGL--VNGAADWGNNFQHYPELCACLDKQ 178
Query: 149 HSC----------SPCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
C C I ++ + L V GI + EILG+
Sbjct: 179 RPCQSYNGKQVYKETCISFIKDFLAKNLIIVIGISFGLAVIEILGL 224
>gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens]
Length = 270
Score = 50.8 bits (120), Expect = 8e-07
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAW-----GIGFGLISSLRVVGV-----VIAVGIFLFLI 59
K L + N+++ L ++ +G+ W G+ L R+ G+ V+ VG+ +F +
Sbjct: 16 KYLLFSYNIIFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRMHGIDPVVLVLMVGVVMFTL 75
Query: 60 ALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASAR 119
G +GA++ + LL F+ ++L+F ++ +V+ + + E +N S R
Sbjct: 76 GFAGCVGALRENICLLNFFCGTIVLIFFLELAVAVLAFLFQDWVRDRFREFFESNIKSYR 135
Query: 120 NDI---------QRNLNCCGFRSVNPNDTCL---ASCVKSDHSCSPC 154
+DI Q+ CCG + P D L +C + +S C
Sbjct: 136 DDIDLQNLIDSLQKANQCCG--AYGPEDWDLNVYFNCSGASYSREKC 180
>gi|50511934 transmembrane 4 superfamily member 17 isoform b [Homo
sapiens]
Length = 329
Score = 50.8 bits (120), Expect = 8e-07
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWGIGF-GLISSLRV---------VGVVIAVGIFLF 57
C K L N+++ ++ L + I W G G++S++ V + + VG +
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMS 75
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTAS 117
++ G IGA++ + LL F+ + L L+F ++ + + QL NN +
Sbjct: 76 VLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKA 135
Query: 118 ARNDI---------QRNLNCCGFRSVNPND 138
R+DI Q +CCG R PND
Sbjct: 136 YRDDIDLQNLIDFAQEYWSCCGAR--GPND 163
>gi|54859560 transmembrane 4 superfamily member 17 isoform a [Homo
sapiens]
Length = 332
Score = 50.8 bits (120), Expect = 8e-07
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWGIGF-GLISSLRV---------VGVVIAVGIFLF 57
C K L N+++ ++ L + I W G G++S++ V + + VG +
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMS 75
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTAS 117
++ G IGA++ + LL F+ + L L+F ++ + + QL NN +
Sbjct: 76 VLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKA 135
Query: 118 ARNDI---------QRNLNCCGFRSVNPND 138
R+DI Q +CCG R PND
Sbjct: 136 YRDDIDLQNLIDFAQEYWSCCGAR--GPND 163
>gi|54859505 transmembrane 4 superfamily member 17 isoform c [Homo
sapiens]
Length = 266
Score = 50.8 bits (120), Expect = 8e-07
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWGIGF-GLISSLRV---------VGVVIAVGIFLF 57
C K L N+++ ++ L + I W G G++S++ V + + VG +
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGVMS 75
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTAS 117
++ G IGA++ + LL F+ + L L+F ++ + + QL NN +
Sbjct: 76 VLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKA 135
Query: 118 ARNDI---------QRNLNCCGFRSVNPND 138
R+DI Q +CCG R PND
Sbjct: 136 YRDDIDLQNLIDFAQEYWSCCGAR--GPND 163
>gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo
sapiens]
Length = 253
Score = 50.1 bits (118), Expect = 1e-06
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 43/223 (19%)
Query: 5 GFACSKNCLCALNLLYTLVSLLLIGIAAWGI--------GFGLISSLRVVGVVIAVGIFL 56
G SK L LNL++ + +L + A+ F + +L V+IAVG L
Sbjct: 5 GITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALL 64
Query: 57 FLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQL--------- 107
F+I L+G ++ + L ++IILLLVF+ + V + + ++
Sbjct: 65 FIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYK 124
Query: 108 LEVGWNNTASAR--NDIQRNLNCCG------------FRSVNPNDTCLASCVKSDHSCS- 152
G N A++R + +QR L+CCG F+ L+ C ++ +C+
Sbjct: 125 TYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASNCNG 184
Query: 153 -----------PCAPIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
C ++ + E++ V L F+ ++LG+
Sbjct: 185 SLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGM 227
>gi|21264583 transmembrane 4 superfamily member 9 [Homo sapiens]
Length = 268
Score = 48.9 bits (115), Expect = 3e-06
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWGIG----FGLISSLRVVG------VVIAVGIFLF 57
C K + N+++ + + +GI W ISS+ +G + + VG +F
Sbjct: 14 CIKYFIFGFNVIFWFLGITFLGIGLWAWNEKGVLSNISSITDLGGFDPVWLFLVVGGVMF 73
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTAS 117
++ G IGA++ + LL F+ + L ++F ++ + + QL NN +
Sbjct: 74 ILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIRA 133
Query: 118 ARNDI---------QRNLNCCG-FRSVNPNDTCLASCVKSDHSCSPC 154
R+DI Q CCG F + + N +C S+ S C
Sbjct: 134 YRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERC 180
>gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens]
Length = 267
Score = 47.4 bits (111), Expect = 9e-06
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 7 ACSKNCLCALNLLYTLVSLLLIGIAAWGI----GFGLI---SSLRVVG--VVIAVGIFLF 57
+C K + N L L+ I W + GF I + L + G +++A+G LF
Sbjct: 7 SCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAANPLLLTGAYILLAMGGLLF 66
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE-------V 110
L+ +G GAV+ ++ LL F+ + +L++F+ + S + + +
Sbjct: 67 LLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQ 126
Query: 111 GWNNT---ASARNDIQRNLNCCGFRSVNPNDTCLAS 143
G N+T ++ N + CCG P D AS
Sbjct: 127 GNNDTDVFSATWNSVMITFGCCGVN--GPEDFKFAS 160
>gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens]
Length = 248
Score = 47.4 bits (111), Expect = 9e-06
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 21/156 (13%)
Query: 7 ACSKNCLCALNLLYTLVSLLLIGIAAWGI----GFGLI---SSLRVVG--VVIAVGIFLF 57
+C K + N L L+ I W + GF I + L + G +++A+G LF
Sbjct: 7 SCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAANPLLLTGAYILLAMGGLLF 66
Query: 58 LIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLE-------V 110
L+ +G GAV+ ++ LL F+ + +L++F+ + S + + +
Sbjct: 67 LLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQ 126
Query: 111 GWNNT---ASARNDIQRNLNCCGFRSVNPNDTCLAS 143
G N+T ++ N + CCG P D AS
Sbjct: 127 GNNDTDIFSATWNSVMITFGCCGVN--GPEDFKFAS 160
>gi|4502693 CD9 antigen [Homo sapiens]
Length = 228
Score = 47.0 bits (110), Expect = 1e-05
Identities = 44/209 (21%), Positives = 78/209 (37%), Gaps = 26/209 (12%)
Query: 2 VCGGFACSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSL-------------RVVGV 48
V GG C K L N ++ L + ++ I W S+ V +
Sbjct: 3 VKGGTKCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGVYI 62
Query: 49 VIAVGIFLFLIALVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLL 108
+I G + L+ +G GAV+ Q +L + LL++F ++ + + + E ++
Sbjct: 63 LIGAGALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDEVIKEVQ 122
Query: 109 EVGWN--NTASARNDIQRN--------LNCCGFRSVNP---NDTCLASCVKSDHSCSPCA 155
E + N +++ QR LNCCG +D C V + C
Sbjct: 123 EFYKDTYNKLKTKDEPQRETLKAIHYALNCCGLAGGVEQFISDICPKKDVLETFTVKSCP 182
Query: 156 PIIGEYAGEVLRFVGGIGLFFSFTEILGV 184
I E +G +G+ + I G+
Sbjct: 183 DAIKEVFDNKFHIIGAVGIGIAVVMIFGM 211
>gi|30425534 tetraspanin 33 [Homo sapiens]
Length = 283
Score = 47.0 bits (110), Expect = 1e-05
Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 10 KNCLCALNLLYTLVSLLLIGIAAWGI----GFGLISSLRVVGVV--IAVGIFLFLIALVG 63
K L N+L+ ++S++++ + + ++ L V + I VG+ +FL+ G
Sbjct: 23 KYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCG 82
Query: 64 LIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEVGWNNTASARNDI- 122
IG+++ + LL + + L VF++Q + + + +G++ E+ N R+D+
Sbjct: 83 CIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLD 142
Query: 123 --------QRNLNCCG 130
Q+ +CCG
Sbjct: 143 LQNLIDFGQKKFSCCG 158
>gi|21265104 tetraspanin 7 [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 39/220 (17%), Positives = 81/220 (36%), Gaps = 41/220 (18%)
Query: 8 CSKNCLCALNLLYTLVSLLLIGIAAWG-------IGFGLISSLRVVGVVIAVGIFLFLIA 60
C K L + ++ + ++L+ + WG I +S V+I G + +
Sbjct: 14 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 73
Query: 61 LVGLIGAVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNQEQQGQLLEV---------G 111
L G + +L Y + L LVF+ + + E + L G
Sbjct: 74 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNG 133
Query: 112 WNNTASARNDIQRNLNCCGFRSVNPNDT--------CLASCVKSDHSCSP---------- 153
+ + A + +QR+L+CCG ++ T SC ++ C+P
Sbjct: 134 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAA 193
Query: 154 -------CAPIIGEYAGEVLRFVGGIGLFFSFTEILGVWL 186
C ++ + + + G+ +F++++G+ L
Sbjct: 194 TKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLL 233
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.145 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,324,322
Number of Sequences: 37866
Number of extensions: 284836
Number of successful extensions: 1113
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 62
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.