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Search of human proteins with 7657313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657313 Lsm1 protein [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657313 Lsm1 protein [Homo sapiens] 259 3e-70
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] 58 3e-09
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s... 40 5e-04
gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote... 39 0.001
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom... 38 0.002
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p... 38 0.002
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p... 38 0.002
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.005
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.005
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.005
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.005
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 37 0.005
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 34 0.039
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 34 0.039
gi|46195755 SCAN domain containing 3 [Homo sapiens] 33 0.051
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] 31 0.25
gi|94681049 hypothetical protein LOC80217 [Homo sapiens] 31 0.33
gi|21327708 nucleosome assembly protein 1-like 1 [Homo sapiens] 30 0.43
gi|4758756 nucleosome assembly protein 1-like 1 [Homo sapiens] 30 0.43
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 30 0.43
gi|254281232 zinc finger and SCAN domain containing 12 [Homo sap... 30 0.57
gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens] 30 0.57
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 29 0.97
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 29 0.97
gi|40254988 LSM domain containing 1 [Homo sapiens] 29 0.97
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 29 0.97
gi|36029914 valosin containing protein (p97)/p47 complex interac... 28 1.6
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 28 1.6
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 28 1.6
gi|229577185 epidermal growth factor receptor pathway substrate ... 28 2.8
>gi|7657313 Lsm1 protein [Homo sapiens]
Length = 133
Score = 259 bits (663), Expect = 3e-70
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP 60
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP 60
Query: 61 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR 120
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR
Sbjct: 61 RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR 120
Query: 121 GLSIPRADTLDEY 133
GLSIPRADTLDEY
Sbjct: 121 GLSIPRADTLDEY 133
>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
sapiens]
Length = 96
Score = 57.8 bits (138), Expect = 3e-09
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKK-YGDIPRGIFV 65
T++L I++ V+ DGR ++G L+ DQ NL+L ++ ER+ + + G+++
Sbjct: 2 TSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYI 61
Query: 66 VRGENVVLLGEIDLEKESDTPLQQVSIEEI 95
VRG+NV ++GEID E +S L + E +
Sbjct: 62 VRGDNVAVIGEIDEETDSALDLGNIRAEPL 91
>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
sapiens]
Length = 76
Score = 40.0 bits (92), Expect = 5e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
+DKK + L GR + G LR D F NLV+ + VE G++ G+ V+RG ++++
Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---IGMVVIRGNSIIM 69
Query: 74 LGEID 78
L ++
Sbjct: 70 LEALE 74
>gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
Length = 62
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
+DKK + L GR + G L+ +D F NLV+ + VE G++ G+ V+RG ++++
Sbjct: 1 MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN---TGMVVIRGNSILM 57
Query: 74 LGEID 78
L ++
Sbjct: 58 LEALE 62
>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
sapiens]
Length = 74
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 15 DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLL 74
DKK + L GR + G LR D F NLV+ + VE G++ G+ +RG ++++L
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN---IGMVEIRGNSIIML 70
Query: 75 GEID 78
++
Sbjct: 71 EALE 74
>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 15 DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLL 74
DKK + L GR + G LR D F NLV+ + VE G++ G+ +RG ++++L
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN---IGMVEIRGNSIIML 70
Query: 75 GEID 78
++
Sbjct: 71 EALE 74
>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
protein [Homo sapiens]
Length = 74
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 15 DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLL 74
DKK + L GR + G LR D F NLV+ + VE G++ G+ +RG ++++L
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN---IGMVEIRGNSIIML 70
Query: 75 GEID 78
++
Sbjct: 71 EALE 74
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K P
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K P
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K P
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K P
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.0 bits (84), Expect = 0.005
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K P
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 33.9 bits (76), Expect = 0.039
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
isoform B [Homo sapiens]
Length = 231
Score = 33.9 bits (76), Expect = 0.039
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR----- 61
++ +++ ID + +L+DGR IG ++ D+ NL+L E + K
Sbjct: 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query: 62 --GIFVVRGENVVLLGEIDLEKESDTPLQQVSI 92
G+ ++RGEN+V + ++ DT + +V +
Sbjct: 66 VLGLVLLRGENLVSM-TVEGPPPKDTGIARVPL 97
>gi|46195755 SCAN domain containing 3 [Homo sapiens]
Length = 1325
Score = 33.5 bits (75), Expect = 0.051
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 68 GENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEK----LKVQALKDR 120
GE VV L E DLE+E D P QQVS +E +E+ L++ K ++Q+++DR
Sbjct: 120 GEEVVTLLE-DLERELDEPRQQVSQGTYGQEVSMEEMIPLDSAKESLGTQLQSMEDR 175
>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
sapiens]
Length = 103
Score = 31.2 bits (69), Expect = 0.25
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPR-----GIFVVRG 68
IDK V + GR G L+ D NLVL T+E + + G+ V RG
Sbjct: 19 IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78
Query: 69 ENVVLL 74
+VVL+
Sbjct: 79 TSVVLI 84
>gi|94681049 hypothetical protein LOC80217 [Homo sapiens]
Length = 1665
Score = 30.8 bits (68), Expect = 0.33
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 86 PLQQVSIEEILEEQRVEQQTKLEAEKLKVQ 115
P++ ++EE+ E +RV QQ K+EAE LK++
Sbjct: 909 PMKARTVEELKELERVLQQKKIEAECLKLR 938
>gi|21327708 nucleosome assembly protein 1-like 1 [Homo sapiens]
Length = 391
Score = 30.4 bits (67), Expect = 0.43
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 74 LGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADTLD 131
+ +ID +++S+ +EE+ EE+ ++TKL+A +L VQ +++ + + LD
Sbjct: 1 MADIDNKEQSELDQDLDDVEEV-EEEETGEETKLKARQLTVQMMQNPQILAALQERLD 57
>gi|4758756 nucleosome assembly protein 1-like 1 [Homo sapiens]
Length = 391
Score = 30.4 bits (67), Expect = 0.43
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 74 LGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADTLD 131
+ +ID +++S+ +EE+ EE+ ++TKL+A +L VQ +++ + + LD
Sbjct: 1 MADIDNKEQSELDQDLDDVEEV-EEEETGEETKLKARQLTVQMMQNPQILAALQERLD 57
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 30.4 bits (67), Expect = 0.43
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 69 ENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDR 120
ENV GE E E + ++ EE LEE++ E++ + E E L V +D+
Sbjct: 894 ENVKGQGEKKEESEEEDEKEEEEEEEKLEEEKEEKEAQEEQESLSVGEEEDK 945
>gi|254281232 zinc finger and SCAN domain containing 12 [Homo
sapiens]
Length = 611
Score = 30.0 bits (66), Expect = 0.57
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 68 GENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAE---KLKVQALK 118
GE VV + E DLE+E D P +QVS+ +E +++ +L E + +Q++K
Sbjct: 114 GEEVVTVLE-DLERELDEPGEQVSVHTGEQEMFLQETVRLRKEGEPSMSLQSMK 166
>gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens]
Length = 800
Score = 30.0 bits (66), Expect = 0.57
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 76 EIDLEKES-DTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIP 125
E +LE+E + P+Q+++IEE L +E++ KL+ +K+ + AL LS P
Sbjct: 183 ERELEEEIIEDPIQELTIEEHL----IERKKKLQEKKMHIAALASAILSDP 229
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 29.3 bits (64), Expect = 0.97
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 8/44 (18%)
Query: 78 DLEKESDTPLQQVSI--------EEILEEQRVEQQTKLEAEKLK 113
++EKE+ + LQ++ I EI +Q++++Q +EAE+LK
Sbjct: 588 EVEKETRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLK 631
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 29.3 bits (64), Expect = 0.97
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 8/44 (18%)
Query: 78 DLEKESDTPLQQVSI--------EEILEEQRVEQQTKLEAEKLK 113
++EKE+ + LQ++ I EI +Q++++Q +EAE+LK
Sbjct: 588 EVEKETRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLK 631
>gi|40254988 LSM domain containing 1 [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 0.97
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKY-GDIPR--GIFVVRGEN 70
++K + + DGRTL+G D+ N++L E + + PR G+ +V G +
Sbjct: 97 LNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHH 156
Query: 71 VVLLGEIDLEKESDT 85
+V I++++ES T
Sbjct: 157 IV---SIEVQRESLT 168
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 29.3 bits (64), Expect = 0.97
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 72 VLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQ---TKLEAEKLKVQALKDR 120
+++ ++D KE + + ++ LE+QR+E++ K E +KL+ QAL+ +
Sbjct: 521 IMIHQVDELKEDISAKESALVKLHLEQQRIEKEKETLKAELQKLRQQALETK 572
>gi|36029914 valosin containing protein (p97)/p47 complex
interacting protein 1 [Homo sapiens]
Length = 1222
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGK 54
MN +P + +D+ KK++ L DG +IG RS+ L L +E + + K
Sbjct: 371 MNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEVFMDK 424
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 78 DLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLS 123
+L K + Q IE+ L+EQ +E Q+KL++E ++ KD ++
Sbjct: 1154 ELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKIT 1199
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 78 DLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLS 123
+L K + Q IE+ L+EQ +E Q+KL++E ++ KD ++
Sbjct: 1154 ELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALERQKDEKIT 1199
>gi|229577185 epidermal growth factor receptor pathway substrate 15
isoform B [Homo sapiens]
Length = 582
Score = 27.7 bits (60), Expect = 2.8
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 76 EIDLEKESDTPLQQVSIEEILEEQRVEQQT---KLEAEKLKVQALKD 119
E DL+++ DT Q+ S + L+++ + T KL+A+K +VQ L D
Sbjct: 39 EQDLKEKEDTIKQRTSEVQDLQDEVQRENTNLQKLQAQKQQVQELLD 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,530,737
Number of Sequences: 37866
Number of extensions: 186174
Number of successful extensions: 989
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 59
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.