BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] (387 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 795 0.0 gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 699 0.0 gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 614 e-176 gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 533 e-152 gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 532 e-151 gi|34878701 paired box protein 2 isoform b [Homo sapiens] 494 e-140 gi|34878699 paired box protein 2 isoform a [Homo sapiens] 484 e-137 gi|34878716 paired box protein 2 isoform d [Homo sapiens] 474 e-134 gi|34878703 paired box protein 2 isoform e [Homo sapiens] 464 e-131 gi|9951920 paired box 5 [Homo sapiens] 456 e-128 gi|34878709 paired box protein 2 isoform c [Homo sapiens] 433 e-121 gi|189083681 paired box gene 6 isoform a [Homo sapiens] 222 4e-58 gi|4505615 paired box gene 6 isoform a [Homo sapiens] 222 4e-58 gi|4580424 paired box gene 6 isoform b [Homo sapiens] 213 3e-55 gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 212 4e-55 gi|7524359 paired box 7 isoform 2 [Homo sapiens] 211 9e-55 gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 207 1e-53 gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 207 1e-53 gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 207 1e-53 gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 207 1e-53 gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 207 1e-53 gi|4505619 paired box 7 isoform 1 [Homo sapiens] 206 3e-53 gi|207029223 paired box 7 isoform 3 [Homo sapiens] 206 3e-53 gi|197276661 paired box 1 [Homo sapiens] 194 9e-50 gi|7242167 paired box 9 [Homo sapiens] 194 1e-49 gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 191 1e-48 gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 191 1e-48 gi|170784824 paired box 4 [Homo sapiens] 164 1e-40 gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 41 0.002 gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 39 0.006 >gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] Length = 387 Score = 795 bits (2053), Expect = 0.0 Identities = 387/387 (100%), Positives = 387/387 (100%) Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAG 300 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAG Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAG 300 Query: 301 REMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSS 360 REMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSS Sbjct: 301 REMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSS 360 Query: 361 LLSSPYYYSSTSRPSAPPTTATAFDHL 387 LLSSPYYYSSTSRPSAPPTTATAFDHL Sbjct: 361 LLSSPYYYSSTSRPSAPPTTATAFDHL 387 >gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] Length = 450 Score = 699 bits (1803), Expect = 0.0 Identities = 362/450 (80%), Positives = 370/450 (82%), Gaps = 63/450 (14%) Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA- 299 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD 300 Query: 300 ------------------------------GREMVGPTLPGYP--PHIPT-----SGQGS 322 + VG +P + PH + +GQ Sbjct: 301 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL 360 Query: 323 YASSAIAG---------------------MVAG----SEYSGNAYGHTPYSSYSEAWRFP 357 + + G +AG SEYSGNAYGHTPYSSYSEAWRFP Sbjct: 361 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP 420 Query: 358 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL 387 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL Sbjct: 421 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL 450 >gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] Length = 398 Score = 614 bits (1584), Expect = e-176 Identities = 303/318 (95%), Positives = 306/318 (96%), Gaps = 2/318 (0%) Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAG 300 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA Sbjct: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA 300 Query: 301 RE--MVGPTLPGYPPHIP 316 + + PG P +P Sbjct: 301 PPFWICSKSAPGSRPSMP 318 >gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] Length = 321 Score = 533 bits (1374), Expect = e-152 Identities = 260/260 (100%), Positives = 260/260 (100%) Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 Query: 241 ERQHYPEAYASPSHTKGEQG 260 ERQHYPEAYASPSHTKGEQG Sbjct: 241 ERQHYPEAYASPSHTKGEQG 260 >gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] Length = 287 Score = 532 bits (1370), Expect = e-151 Identities = 261/270 (96%), Positives = 264/270 (97%) Query: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK Sbjct: 1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK 60 Query: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND Sbjct: 61 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND 120 Query: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY Sbjct: 121 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY 180 Query: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF Sbjct: 181 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF 240 Query: 241 ERQHYPEAYASPSHTKGEQGLYPLPLLNST 270 ERQHYPEAYASPSHTKGEQ + L + +T Sbjct: 241 ERQHYPEAYASPSHTKGEQEVNTLAMPMAT 270 >gi|34878701 paired box protein 2 isoform b [Homo sapiens] Length = 393 Score = 494 bits (1273), Expect = e-140 Identities = 249/386 (64%), Positives = 294/386 (76%), Gaps = 5/386 (1%) Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61 P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68 Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128 Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181 VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186 Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241 ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246 Query: 242 RQHYPEAYASPSHTKGEQGL-YPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299 R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306 Query: 300 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNS 359 GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAWRF N Sbjct: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNP 366 Query: 360 SLLSSPYYYSSTSRPSAPPTTATAFD 385 +LLSSPYYYS+ R SAP A A+D Sbjct: 367 ALLSSPYYYSAAPR-SAPAAAAAAYD 391 >gi|34878699 paired box protein 2 isoform a [Homo sapiens] Length = 416 Score = 484 bits (1246), Expect = e-137 Identities = 251/409 (61%), Positives = 297/409 (72%), Gaps = 28/409 (6%) Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61 P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68 Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128 Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181 VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186 Query: 182 INGLLGIAQPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSG 218 ING+LGI + +KRK D+ + +D S+ DSQS Sbjct: 187 INGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 246 Query: 219 PRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGL-YPLPLLNSTLDDGKAT 277 RKHLR D F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++ Sbjct: 247 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 306 Query: 278 LTPSNTP-LGRNLSTHQTYPVVAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSE 336 L+ S P LG N+S QTYPVV GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE Sbjct: 307 LSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSE 366 Query: 337 YSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFD 385 +SGN Y H Y++Y+EAWRF N +LLSSPYYYS+ R SAP A A+D Sbjct: 367 FSGNPYSHPQYTAYNEAWRFSNPALLSSPYYYSAAPR-SAPAAAAAAYD 414 >gi|34878716 paired box protein 2 isoform d [Homo sapiens] Length = 408 Score = 474 bits (1221), Expect = e-134 Identities = 244/391 (62%), Positives = 290/391 (74%), Gaps = 10/391 (2%) Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61 P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68 Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128 Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181 VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186 Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241 ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246 Query: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299 R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306 Query: 300 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNS 359 GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE+SGN Y H Y++Y+EAWRF N Sbjct: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSNP 366 Query: 360 SLLSSPYYYSSTSRPSAP-PTTATAF--DHL 387 +LL P P P P TAT++ DH+ Sbjct: 367 ALLMPP---PGPPLPLLPLPMTATSYRGDHI 394 >gi|34878703 paired box protein 2 isoform e [Homo sapiens] Length = 431 Score = 464 bits (1194), Expect = e-131 Identities = 246/414 (59%), Positives = 293/414 (70%), Gaps = 33/414 (7%) Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61 P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68 Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128 Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181 VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186 Query: 182 INGLLGIAQPGSDKRKMDDSD--------------------QDSCRLSI---DSQSSSSG 218 ING+LGI + +KRK D+ + +D S+ DSQS Sbjct: 187 INGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS 246 Query: 219 PRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKAT 277 RKHLR D F+Q LE L+ FER YP+ + + H K EQG Y LP L LD+ K++ Sbjct: 247 LRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 306 Query: 278 LTPSNTP-LGRNLSTHQTYPVVAGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSE 336 L+ S P LG N+S QTYPVV GR+M TLPGYPPH+P +GQGSY +S +AGMV GSE Sbjct: 307 LSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSE 366 Query: 337 YSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAP-PTTATAF--DHL 387 +SGN Y H Y++Y+EAWRF N +LL P P P P TAT++ DH+ Sbjct: 367 FSGNPYSHPQYTAYNEAWRFSNPALLMPP---PGPPLPLLPLPMTATSYRGDHI 417 >gi|9951920 paired box 5 [Homo sapiens] Length = 391 Score = 456 bits (1172), Expect = e-128 Identities = 232/384 (60%), Positives = 283/384 (73%), Gaps = 13/384 (3%) Query: 7 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66 R+GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKILGRYY Sbjct: 14 RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 73 Query: 67 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126 ETGSI+PGVIGGSKPKVATPKVVEKI +YKRQNPTMFAWEIRDRLLAE VCDNDTVPSVS Sbjct: 74 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVS 133 Query: 127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186 SINRIIRTKVQQP N P+ + H+++ + +VT S +DS GS+YSI+G+L Sbjct: 134 SINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185 Query: 187 GIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQH 244 GI P +D KRK D+ Q+S + S RK +R D F+Q LE L+ FERQH Sbjct: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQH 245 Query: 245 YPEAYASPSHTKGEQ--GLYPLPLLNSTLDDGKATL-TPSNTPLGRNLSTHQTYPVVAGR 301 Y + + + K EQ + L LDD KA L +P+ +G ++ Q+YP+V GR Sbjct: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGR 305 Query: 302 EMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSL 361 ++ TLPGYPPH+P +GQGSY++ + GMV GSE+SG+ Y H YSSY+++WRFPN L Sbjct: 306 DLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHPQYSSYNDSWRFPNPGL 365 Query: 362 LSSPYYYSSTSRPSAPPTTATAFD 385 L SPYYYS+ +R +APP ATA+D Sbjct: 366 LGSPYYYSAAARGAAPPAAATAYD 389 >gi|34878709 paired box protein 2 isoform c [Homo sapiens] Length = 396 Score = 433 bits (1114), Expect = e-121 Identities = 229/384 (59%), Positives = 272/384 (70%), Gaps = 22/384 (5%) Query: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61 P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI Sbjct: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68 Query: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT Sbjct: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128 Query: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181 VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS Sbjct: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186 Query: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241 ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE Sbjct: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246 Query: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299 R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV Sbjct: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306 Query: 300 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNS 359 GR+M TLPGYPPH+P +GQGSY +S +AGMV EA P+S Sbjct: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMV------------------PEAAVGPSS 348 Query: 360 SLLSSPYYYSSTSRPSAPPTTATA 383 SL+S P + P PT A++ Sbjct: 349 SLMSKPGRKLAEVPPCVQPTGASS 372 >gi|189083681 paired box gene 6 isoform a [Homo sapiens] Length = 422 Score = 222 bits (566), Expect = 4e-58 Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%) Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65 +++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60 Query: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125 YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120 Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177 SSINR++R + + D + G T P ++V P P D Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178 Query: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237 G S +DSD+ RL + + + RT +F+Q +E LE Sbjct: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226 Query: 238 CPFERQHYPEAYA 250 FER HYP+ +A Sbjct: 227 KEFERTHYPDVFA 239 >gi|4505615 paired box gene 6 isoform a [Homo sapiens] Length = 422 Score = 222 bits (566), Expect = 4e-58 Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 22/253 (8%) Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65 +++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+VS+GCVSKILGRY Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60 Query: 66 YETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSV 125 YETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRLL+EGVC ND +PSV Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120 Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSSAVTPPESPQSDSLG 177 SSINR++R + + D + G T P ++V P P D Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSV--PGQPTQDGCQ 178 Query: 178 STYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLE 237 G S +DSD+ RL + + + RT +F+Q +E LE Sbjct: 179 QQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------RT-SFTQEQIEALE 226 Query: 238 CPFERQHYPEAYA 250 FER HYP+ +A Sbjct: 227 KEFERTHYPDVFA 239 >gi|4580424 paired box gene 6 isoform b [Homo sapiens] Length = 436 Score = 213 bits (541), Expect = 3e-55 Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 36/267 (13%) Query: 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR------------- 52 +++ H G+NQLGG FVNGRPLP+ RQ+IV+LAH G RPCDISR L+ Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60 Query: 53 -VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111 VS+GCVSKILGRYYETGSIRP IGGSKP+VATP+VV KI YKR+ P++FAWEIRDRL Sbjct: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120 Query: 112 LAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHT--------LIPSS 163 L+EGVC ND +PSVSSINR++R + + D + G T P + Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180 Query: 164 AVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHL 223 +V P P D G S +DSD+ RL + + + Sbjct: 181 SV--PGQPTQDGCQQQEG-----GGENTNSISSNGEDSDEAQMRLQLKRKLQRN------ 227 Query: 224 RTDAFSQHHLEPLECPFERQHYPEAYA 250 RT +F+Q +E LE FER HYP+ +A Sbjct: 228 RT-SFTQEQIEALEKEFERTHYPDVFA 253 >gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] Length = 483 Score = 212 bits (540), Expect = 4e-55 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128 GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI Sbjct: 94 GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153 Query: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188 +RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191 Query: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP+ Sbjct: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244 Query: 248 AY 249 Y Sbjct: 245 IY 246 >gi|7524359 paired box 7 isoform 2 [Homo sapiens] Length = 518 Score = 211 bits (537), Expect = 9e-55 Identities = 158/408 (38%), Positives = 199/408 (48%), Gaps = 84/408 (20%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPSVSS Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+R++R K F + A K G + +SI+G+LG Sbjct: 154 ISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGILG 191 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 DK D D ++S+ RK R+ F+ LE LE FER HYP Sbjct: 192 ------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 240 Query: 247 EAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATLTP 280 + Y + + + G L N L G TL P Sbjct: 241 DIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPP 300 Query: 281 SNTPLGRNLSTHQTYPVVAGREMVGPTLPGYPPHIP-TSGQGSYASSAIAGMVAGSEYSG 339 P TYP + G T+ P P T QG A++A A + Sbjct: 301 YQLP-------DSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAA------DTS 347 Query: 340 NAYG-HTPYSSYSEAWRFPNS--------SLLSSPYYYSSTSRPSAPP 378 +AYG +SSYS+++ P + S SP S PSA P Sbjct: 348 SAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVP 395 >gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] Length = 403 Score = 207 bits (528), Expect = 1e-53 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244 Query: 247 EAY 249 + Y Sbjct: 245 DIY 247 >gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] Length = 407 Score = 207 bits (528), Expect = 1e-53 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244 Query: 247 EAY 249 + Y Sbjct: 245 DIY 247 >gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] Length = 505 Score = 207 bits (528), Expect = 1e-53 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244 Query: 247 EAY 249 + Y Sbjct: 245 DIY 247 >gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] Length = 484 Score = 207 bits (528), Expect = 1e-53 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244 Query: 247 EAY 249 + Y Sbjct: 245 DIY 247 >gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] Length = 479 Score = 207 bits (528), Expect = 1e-53 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187 I+RI+R+K G + + E+ +S+ + +SI+G+L Sbjct: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192 Query: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246 S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP Sbjct: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244 Query: 247 EAY 249 + Y Sbjct: 245 DIY 247 >gi|4505619 paired box 7 isoform 1 [Homo sapiens] Length = 520 Score = 206 bits (524), Expect = 3e-53 Identities = 158/410 (38%), Positives = 199/410 (48%), Gaps = 86/410 (20%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS--V 125 GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPS V Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153 Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGL 185 SSI+R++R K F + A K G + +SI+G+ Sbjct: 154 SSISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGI 191 Query: 186 LGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQH 244 LG DK D D ++S+ RK R+ F+ LE LE FER H Sbjct: 192 LG------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240 Query: 245 YPEAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATL 278 YP+ Y + + + G L N L G TL Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300 Query: 279 TPSNTPLGRNLSTHQTYPVVAGREMVGPTLPGYPPHIP-TSGQGSYASSAIAGMVAGSEY 337 P P TYP + G T+ P P T QG A++A A Sbjct: 301 PPYQLP-------DSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAA------D 347 Query: 338 SGNAYG-HTPYSSYSEAWRFPNS--------SLLSSPYYYSSTSRPSAPP 378 + +AYG +SSYS+++ P + S SP S PSA P Sbjct: 348 TSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVP 397 >gi|207029223 paired box 7 isoform 3 [Homo sapiens] Length = 505 Score = 206 bits (524), Expect = 3e-53 Identities = 158/410 (38%), Positives = 199/410 (48%), Gaps = 86/410 (20%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS--V 125 GSIRPG IGGSKP+ VATP V +KI +YKR+NP MF+WEIRDRLL +G CD TVPS V Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153 Query: 126 SSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGL 185 SSI+R++R K F + A K G + +SI+G+ Sbjct: 154 SSISRVLRIK----FGKKEEEDEADKKEDDGEK------------------KAKHSIDGI 191 Query: 186 LGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQH 244 LG DK D D ++S+ RK R+ F+ LE LE FER H Sbjct: 192 LG------DKGNRLDEGSD-----VESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240 Query: 245 YPEAYASP---------------------SHTKGEQGLYPLPLLNSTL-----DDGKATL 278 YP+ Y + + + G L N L G TL Sbjct: 241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300 Query: 279 TPSNTPLGRNLSTHQTYPVVAGREMVGPTLPGYPPHIP-TSGQGSYASSAIAGMVAGSEY 337 P P TYP + G T+ P P T QG A++A A Sbjct: 301 PPYQLP-------DSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAA------D 347 Query: 338 SGNAYG-HTPYSSYSEAWRFPNS--------SLLSSPYYYSSTSRPSAPP 378 + +AYG +SSYS+++ P + S SP S PSA P Sbjct: 348 TSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQVMSILGNPSAVP 397 >gi|197276661 paired box 1 [Homo sapiens] Length = 534 Score = 194 bits (494), Expect = 9e-50 Identities = 102/183 (55%), Positives = 122/183 (66%), Gaps = 8/183 (4%) Query: 10 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 69 +G +NQLGG FVNGRPLP +R RIV+LA G+RPCDISRQLRVSHGCVSKIL RY ETG Sbjct: 99 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 158 Query: 70 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129 SI PG IGGSKP+V TP VV+ I DYK+ +P +FAWEIRDRLLA+GVCD VPSVSSI+ Sbjct: 159 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 218 Query: 130 RIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAV-----TPPESPQSDSLGSTYSING 184 RI+R K+ +L P +P + + P SP +GS + G Sbjct: 219 RILRNKIG---SLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHPGVPG 275 Query: 185 LLG 187 G Sbjct: 276 TAG 278 >gi|7242167 paired box 9 [Homo sapiens] Length = 341 Score = 194 bits (493), Expect = 1e-49 Identities = 109/205 (53%), Positives = 130/205 (63%), Gaps = 33/205 (16%) Query: 11 GGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS 70 G +NQLGG FVNGRPLP +R RIV+LA G+RPCDISRQLRVSHGCVSKIL RY ETGS Sbjct: 6 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65 Query: 71 IRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINR 130 I PG IGGSKP+V TP VV+ I YK+++P +FAWEIRDRLLA+GVCD VPSVSSI+R Sbjct: 66 ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 125 Query: 131 IIRTKV----QQ-----------------PFN------LPMDSCVATKSLSPGHTLIPSS 163 I+R K+ QQ P+N P+ + A PG IP S Sbjct: 126 ILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGS 185 Query: 164 AVTPPESPQSDSLGSTYSINGLLGI 188 P P S++S+ +LGI Sbjct: 186 VAMPRTWP------SSHSVTDILGI 204 >gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] Length = 206 Score = 191 bits (484), Expect = 1e-48 Identities = 91/128 (71%), Positives = 108/128 (84%), Gaps = 1/128 (0%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTK 135 I+RI+R+K Sbjct: 154 ISRILRSK 161 >gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] Length = 215 Score = 191 bits (484), Expect = 1e-48 Identities = 91/128 (71%), Positives = 108/128 (84%), Gaps = 1/128 (0%) Query: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68 G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93 Query: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127 GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153 Query: 128 INRIIRTK 135 I+RI+R+K Sbjct: 154 ISRILRSK 161 >gi|170784824 paired box 4 [Homo sapiens] Length = 343 Score = 164 bits (415), Expect = 1e-40 Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72 +NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG + Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60 Query: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132 P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++ Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120 Query: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167 R +Q+ LP + L+P S + TP Sbjct: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154 >gi|55743092 aristaless-like homeobox 4 [Homo sapiens] Length = 411 Score = 41.2 bits (95), Expect = 0.002 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 12/116 (10%) Query: 143 PMDSCVATKSLSPGHTL---IP-----SSAVTPPESPQSDSLGSTYSINGLLGIAQPGSD 194 P D + + S GH+ +P SS P P SD++G S + G Sbjct: 132 PPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQ 191 Query: 195 KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYA 250 R SD S DS+S+ R++ T F+ + LE LE F++ HYP+ YA Sbjct: 192 DRA--SSDLPSPLEKADSESNKGKKRRNRTT--FTSYQLEELEKVFQKTHYPDVYA 243 >gi|139394646 iroquois homeobox protein 5 [Homo sapiens] Length = 483 Score = 39.3 bits (90), Expect = 0.006 Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 15/139 (10%) Query: 245 YPEAYA-SPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAGREM 303 YP+ Y PS LY P ++++ G P LGR+ S P Sbjct: 3 YPQGYLYQPS---ASLALYSCPAYSTSVISG-----PRTDELGRSSSGSAFSPYAGSTAF 54 Query: 304 VGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLS 363 P+ PGY H+ A A A A S Y G+ Y HTP + S + + L S Sbjct: 55 TAPS-PGYNSHLQYG-----ADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGS 108 Query: 364 SPYYYSSTSRPSAPPTTAT 382 PY + + + TAT Sbjct: 109 YPYGDPAYRKNATRDATAT 127 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,780,845 Number of Sequences: 37866 Number of extensions: 919703 Number of successful extensions: 2484 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 73 Number of HSP's that attempted gapping in prelim test: 2363 Number of HSP's gapped (non-prelim): 176 length of query: 387 length of database: 18,247,518 effective HSP length: 104 effective length of query: 283 effective length of database: 14,309,454 effective search space: 4049575482 effective search space used: 4049575482 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.