Guide to the Human Genome
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Name: SERINC2 Sequence: fasta or formatted (455aa) NCBI GI: 71834872
Description:

tumor differentially expressed 2-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         36           2
 C cysteine            5.1         23           2
 D aspartate           2.6         12           1
 E glutamate           3.5         16           2
 F phenylalanine       7.9         36           5
 G glycine             6.4         29           1
 H histidine           1.5          7           1
 I isoleucine          5.3         24           2
 K lysine              2.0          9           1
 L leucine            13.4         61           3
 M methionine          2.6         12           2
 N asparagine          2.6         12           1
 P proline             4.2         19           2
 Q glutamine           4.2         19           5
 R arginine            3.1         14           1
 S serine              8.6         39           3
 T threonine           5.7         26           1
 V valine              7.0         32           2
 W tryptophan          3.1         14           2
 Y tyrosine            3.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor differentially expressed 2-like 
SERINC1               0.556   serine incorporator 1 
SERINC3               0.486   tumor differentially expressed protein 1 
SERINC3               0.486   tumor differentially expressed protein 1 
SERINC5               0.271   developmentally regulated protein TPO1 
SERINC4               0.081   serine incorporator 4 
ATP13A3               0.014   ATPase type 13A3 
OR7A17                0.010   olfactory receptor, family 7, subfamily A, member 17...
OR7C2                 0.009   olfactory receptor, family 7, subfamily C, member 2 ...
MT1B                  0.008   metallothionein 1B 
OR7A10                0.008   olfactory receptor, family 7, subfamily A, member 10...
MT1X                  0.008   metallothionein 1X 
MT1M                  0.008   metallothionein 1M 
MT1H                  0.008   metallothionein 1H 
MT1A                  0.008   metallothionein 1A 
MT1E                  0.005   metallothionein 1E 
MT2A                  0.005   metallothionein 2A 
MT1F                  0.005   metallothionein 1F 
OR2AT4                0.005   olfactory receptor, family 2, subfamily AT, member 4...
KRTAP10-9             0.005   keratin associated protein 10-9 
SLC22A18              0.005   tumor suppressing subtransferable candidate 5 [Homo...
SLC22A18              0.005   tumor suppressing subtransferable candidate 5 [Homo...
MT3                   0.005   metallothionein 3 
KRTAP5-9              0.005   keratin associated protein 5-9 
KRTAP4-1              0.005   keratin associated protein 4-1 
JOSD1                 0.004   Josephin domain containing 1 
KRTAP10-5             0.004   keratin associated protein 10-5 
KLK9                  0.004   kallikrein-related peptidase 9 
KRTAP5-6              0.004   keratin associated protein 5-6 
OR1D2                 0.004   olfactory receptor, family 1, subfamily D, member 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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