Guide to the Human Genome
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Name: SERINC1 Sequence: fasta or formatted (453aa) NCBI GI: 24308213
Description:

serine incorporator 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         31           3
 C cysteine            4.0         18           2
 D aspartate           2.6         12           2
 E glutamate           4.4         20           2
 F phenylalanine       5.5         25           2
 G glycine             6.2         28           2
 H histidine           1.3          6           1
 I isoleucine          6.6         30           3
 K lysine              2.9         13           1
 L leucine            11.9         54           3
 M methionine          3.5         16           2
 N asparagine          4.6         21           2
 P proline             3.5         16           1
 Q glutamine           2.2         10           1
 R arginine            2.9         13           1
 S serine              9.9         45           3
 T threonine           5.5         25           2
 V valine              8.2         37           2
 W tryptophan          3.1         14           2
 Y tyrosine            4.2         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serine incorporator 1 
SERINC3               0.587   tumor differentially expressed protein 1 
SERINC3               0.587   tumor differentially expressed protein 1 
SERINC2               0.565   tumor differentially expressed 2-like 
SERINC5               0.296   developmentally regulated protein TPO1 
SERINC4               0.087   serine incorporator 4 
ATP13A3               0.009   ATPase type 13A3 
EDAR                  0.007   ectodysplasin A receptor precursor 
LOC100291072          0.006   PREDICTED: hypothetical protein XP_002347541 
LOC100289369          0.006   PREDICTED: hypothetical protein XP_002342179 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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