Guide to the Human Genome
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Name: C20orf107 Sequence: fasta or formatted (171aa) NCBI GI: 71043642
Description:

hypothetical protein LOC388799

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          6           1
 C cysteine            3.5          6           1
 D aspartate           1.8          3           1
 E glutamate           7.0         12           2
 F phenylalanine       5.3          9           1
 G glycine             5.8         10           1
 H histidine           1.8          3           1
 I isoleucine          2.3          4           1
 K lysine              7.6         13           2
 L leucine            13.5         23           3
 M methionine          2.3          4           1
 N asparagine          4.7          8           1
 P proline             5.8         10           2
 Q glutamine           5.3          9           1
 R arginine            4.7          8           2
 S serine              9.9         17           3
 T threonine           4.7          8           1
 V valine              5.8         10           2
 W tryptophan          2.9          5           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388799 
C20orf106             0.861   hypothetical protein LOC200232 
ZNF263                0.015   zinc finger protein 263 
ZFP82                 0.015   zinc finger protein 82 homolog 
MOBKL1B               0.015   Mob4B protein 
HKR1                  0.012   GLI-Kruppel family member HKR1 
LOC729747             0.012   similar to zinc finger protein 709 
ZNF624                0.009   zinc finger protein 624 
ZNF718                0.009   zinc finger protein 718 
CCDC144A              0.009   coiled-coil domain containing 144A 
LOC100133142          0.009   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.009   PREDICTED: similar to zinc finger protein 208 [Homo...
ZFP30                 0.009   zinc finger protein 30 homolog 
ZNF557                0.009   zinc finger protein 557 isoform a 
ZNF557                0.009   zinc finger protein 557 isoform a 
ZNF557                0.009   zinc finger protein 557 isoform b 
MOBKL1A               0.009   MOB1, Mps One Binder kinase activator-like 1A 
ZNF266                0.009   zinc finger protein 266 
ZNF266                0.009   zinc finger protein 266 
ZNF337                0.009   zinc finger protein 337 
ZFP90                 0.009   zinc finger protein 90 
ZNF670                0.006   zinc finger protein 670 
ZNF570                0.006   zinc finger protein 570 
ZNF493                0.006   zinc finger protein 493 isoform 1 
ZNF493                0.006   zinc finger protein 493 isoform 3 
PYGM                  0.006   muscle glycogen phosphorylase 
ZNF568                0.006   zinc finger protein 568 
NPTX2                 0.006   neuronal pentraxin II 
ZNF540                0.006   zinc finger protein 540 
ZNF780A               0.006   zinc finger protein 780A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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