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Search of human proteins with 70778869
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70778869 invasion inhibitory protein 45 [Homo sapiens]
(388 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70778869 invasion inhibitory protein 45 [Homo sapiens] 800 0.0
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 40 0.004
gi|119709822 castor homolog 1, zinc finger isoform b [Homo sapiens] 40 0.004
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 39 0.010
gi|55741677 SET domain containing 1A [Homo sapiens] 37 0.030
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 37 0.040
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.040
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 36 0.067
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 36 0.067
gi|38570149 WWC family member 3 [Homo sapiens] 35 0.088
gi|149274646 hypothetical protein LOC57710 [Homo sapiens] 35 0.12
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.12
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 35 0.15
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.15
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.15
gi|254039650 synaptotagmin-like 5 isoform 1 [Homo sapiens] 34 0.20
gi|254039648 synaptotagmin-like 5 isoform 2 [Homo sapiens] 34 0.20
gi|20270305 synaptotagmin-like 5 isoform 1 [Homo sapiens] 34 0.20
gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens] 34 0.26
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens] 34 0.26
gi|171906567 peripheral benzodiazepine receptor-associated prote... 34 0.26
gi|171906559 peripheral benzodiazepine receptor-associated prote... 34 0.26
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 33 0.33
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 33 0.33
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 33 0.44
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 33 0.44
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
>gi|70778869 invasion inhibitory protein 45 [Homo sapiens]
Length = 388
Score = 800 bits (2067), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MVEAEELAQLRLLNLELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSST 60
MVEAEELAQLRLLNLELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSST
Sbjct: 1 MVEAEELAQLRLLNLELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSST 60
Query: 61 SLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTS 120
SLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTS
Sbjct: 61 SLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTS 120
Query: 121 SLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDW 180
SLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDW
Sbjct: 121 SLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDW 180
Query: 181 IAGSLDTSSSITSQPEAFFSKLQEFRETNKEECICSHPEPQLPGLRESSGSGVEEDHECV 240
IAGSLDTSSSITSQPEAFFSKLQEFRETNKEECICSHPEPQLPGLRESSGSGVEEDHECV
Sbjct: 181 IAGSLDTSSSITSQPEAFFSKLQEFRETNKEECICSHPEPQLPGLRESSGSGVEEDHECV 240
Query: 241 YCYRVNRRLFPVPVDPGTPCRLCRTPRDQQGPGTLAQPAHVRVSIPLSILEPPHRYHIHR 300
YCYRVNRRLFPVPVDPGTPCRLCRTPRDQQGPGTLAQPAHVRVSIPLSILEPPHRYHIHR
Sbjct: 241 YCYRVNRRLFPVPVDPGTPCRLCRTPRDQQGPGTLAQPAHVRVSIPLSILEPPHRYHIHR 300
Query: 301 RKSFDASDTLALPRHCLLGWDIFPPKSEKSSAPRNLDLWSSVSAEAQHQKLSGTSSPFHP 360
RKSFDASDTLALPRHCLLGWDIFPPKSEKSSAPRNLDLWSSVSAEAQHQKLSGTSSPFHP
Sbjct: 301 RKSFDASDTLALPRHCLLGWDIFPPKSEKSSAPRNLDLWSSVSAEAQHQKLSGTSSPFHP 360
Query: 361 ASPMQMLPPTPTWSVPQVPRPHVPRQKP 388
ASPMQMLPPTPTWSVPQVPRPHVPRQKP
Sbjct: 361 ASPMQMLPPTPTWSVPQVPRPHVPRQKP 388
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 43 SSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPP-------DACRGDLRD-VARSGVAS 94
SS S S TP TP ++ S P +SV PP A +G + +AR A+
Sbjct: 825 SSGSAASATPDTPTLVASGAGDSAPVAAASVPAPPASIMERISASKGLISPMMARLAAAA 884
Query: 95 LPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRSI 145
L P+ S + P P PEP G PGP EA RS+
Sbjct: 885 LKPSATFDPGSGQQVTPARFPPAQVK----PEPGESTGAPGPHEASQDRSL 931
>gi|119709822 castor homolog 1, zinc finger isoform b [Homo sapiens]
Length = 1166
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 43 SSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPP-------DACRGDLRD-VARSGVAS 94
SS S S TP TP ++ S P +SV PP A +G + +AR A+
Sbjct: 825 SSGSAASATPDTPTLVASGAGDSAPVAAASVPAPPASIMERISASKGLISPMMARLAAAA 884
Query: 95 LPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRSI 145
L P+ S + P P PEP G PGP EA RS+
Sbjct: 885 LKPSATFDPGSGQQVTPARFPPAQVK----PEPGESTGAPGPHEASQDRSL 931
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 38.5 bits (88), Expect = 0.010
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 31 SVARAASESSLESSSSYNSETPSTPETSSTSLSTSC----PRGRSSVWGPPDACRGDLRD 86
S +R+ S+S SSS NS + + + S S S SC R RS + R R
Sbjct: 737 SRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRS 796
Query: 87 VARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGD 133
+RS S P + + S P P S+ LG++S P P RLG+
Sbjct: 797 QSRSRSKSYSPGRRRRSRSRS-PTPPSSAGLGSNS-APPIPDSRLGE 841
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 37.0 bits (84), Expect = 0.030
Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 21 LWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTSLST------SCPRGRSSVW 74
L+ D S + + S SS SSSS +S + S+ +SS+ S+ P S
Sbjct: 1019 LYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSAS 1078
Query: 75 GPPDACRGDL---------RDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDP 125
PP VA S V LP + + S RP + S ++ LR P
Sbjct: 1079 PPPREVPVPTPAPVEVPVPERVAGSPVTPLP----EQEASPARPAGPTEESPPSAPLRPP 1134
Query: 126 EPSGRLGDPGPQEAQTPRS--ILAQQSKLSKPRVTFSEESAVP 166
EP P P+ + P S L K + V+FS VP
Sbjct: 1135 EPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVP 1177
Score = 33.1 bits (74), Expect = 0.44
Identities = 45/163 (27%), Positives = 64/163 (39%), Gaps = 30/163 (18%)
Query: 31 SVARAASESSLESSSSYNSETPSTPETSSTS-------------LSTSCPRGRSSVWGPP 77
+ + +AS SSL SSSS +S + S+ SS + TS P R++ PP
Sbjct: 334 TASSSASSSSLSSSSSSSSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRRATREEPP 393
Query: 78 DA--CRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPG 135
A S + LPP + + RP AP PEP G G G
Sbjct: 394 GAPFAENTAERFPPSYTSYLPPEPSRPTDQDYRPPASEAP-----PPEPPEPGGGGGGGG 448
Query: 136 P----QEAQT-PRSILAQQSKLSKPRVT-----FSEESAVPKR 168
P +E +T PR +S P T F++ S++ R
Sbjct: 449 PSPEREEVRTSPRPASPARSGSPAPETTNESVPFAQHSSLDSR 491
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 36.6 bits (83), Expect = 0.040
Identities = 92/378 (24%), Positives = 147/378 (38%), Gaps = 67/378 (17%)
Query: 39 SSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPA 98
SS ++S +SE+ P SS+ PR PP+A R +S PP
Sbjct: 547 SSDSATSQEHSESKDPPPKSSSK----APRA------PPEAPHPGKRSCQKSPAQQEPPQ 596
Query: 99 KCQHQESLGRPRPH-----SAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLS 153
+ +++G +P SA + +SL+ G L P QT + ++K
Sbjct: 597 R----QTVGTKQPKKPVKASARAGSRTSLQGEREPGLL--PYGSRDQTSKDKPKVKTK-G 649
Query: 154 KPRVTFSEES--AVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPEAFFSKLQEFRETNKE 211
+PR S E AVP S + + SL S S PE +++ T +
Sbjct: 650 RPRAAASNEPKPAVPPSSEKKKH-------KSSLPAPSKALSGPEPAKDNVED--RTPEH 700
Query: 212 ECICSHPEPQLPGLRESSGSGVEEDHECVYCYRVNRR-LFPVPVDPGTPCRLCRTPRDQQ 270
+ E Q P SGS + V +R+ P+P+ +L RD
Sbjct: 701 FALVPLTESQGPP-HSGSGSRTSGCRQAVVVQEDSRKDRLPLPL---RDTKLLSPLRDTP 756
Query: 271 GPGTLAQPAHVRVSIPL--SILEPPHR----------------YHIHRRKSFDASDTLAL 312
P +L V++++ L I +PP + H ++S D+S LA
Sbjct: 757 PPQSLM----VKITLDLLSRIPQPPGKGSRQRKAEDKQPPAGKKHSSEKRSSDSSSKLAK 812
Query: 313 PRHCLLGWDIFPPKSEKSSAPRNLDLWSSVSAEAQHQKLSGT--SSPFHPASPMQMLPPT 370
R D ++K + + SS S+ + H++ S T S P +S +MLPP
Sbjct: 813 KRKGEAERDC---DNKKIRLEKEIKSQSS-SSSSSHKESSKTKPSRPSSQSSKKEMLPPP 868
Query: 371 PTWSVPQVP-RPHVPRQK 387
P S Q P +P + R +
Sbjct: 869 PVSSSSQKPAKPALKRSR 886
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 36.6 bits (83), Expect = 0.040
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 31 SVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARS 90
S + + S S SSSY+S + + SS S S S R SS P +
Sbjct: 563 SYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTK 622
Query: 91 GVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRD-PEPSGRLGDP 134
G + PP K ++S+ +P P AP T + PEP+ + GDP
Sbjct: 623 GEPAPPPGKA-GEKSVKKPAPPPAPPQATKTTAPVPEPT-KPGDP 665
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 46/169 (27%)
Query: 23 VGQDAVRRSVARAASESSLESSSSYNSETPSTP-----------------ETSSTSLSTS 65
V ++ +R + +S+ + +S+ PSTP E T L+ +
Sbjct: 765 VKEEKRKRDSSTQPPKSAKPPAGGKSSQQPSTPQQAPPGQPQQGTFVAHKEIKLTLLNKA 824
Query: 66 CPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDP 125
+G + P D R S PPAK RP+++P G+ RD
Sbjct: 825 ADKGSRKRYEPSDKDR-----------QSPPPAK----------RPNTSPDRGS---RDR 860
Query: 126 EPSGRLGDPGP-----QEAQTPRSILAQQSKLSKPRVTFSEESAVPKRS 169
+ GRLG P P Q ++ P + ++ +LS + S+ ++VP ++
Sbjct: 861 KSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSKVTSVPGKA 909
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 35.8 bits (81), Expect = 0.067
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 54/247 (21%)
Query: 2 VEAEELAQLRLLNLELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTS 61
++ EELA + + E L+ Q ++ + R AS + L S S S+ +SS+S
Sbjct: 531 LKIEELALAKGITEECLK-----QPSLEQKEGRRASHTLLPSHRLKQSADSSSSRSSSSS 585
Query: 62 LSTSCPRGRSSVWGPPDA--------CRGDLRDVARSGVASLPPAK-------CQHQESL 106
S+S R RS PD+ R RDVA++ + P + S
Sbjct: 586 SSSSRSRSRS-----PDSSGSRSHSPLRSKQRDVAQARTHANPRGRPKMGSRSTSESRSR 640
Query: 107 GRPRPHSAPSLGTSSL---------------RDPEPSGRLGDP--------GPQEAQTPR 143
R R SA S SL +DP + P P+E +
Sbjct: 641 SRSRSRSASSNSRKSLSPGVSRDSSTSYTETKDPSSGQEVATPPVPQLQVCEPKERTSTS 700
Query: 144 SILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPEAFFSKLQ 203
S Q +LS+P ESA + RL+P G + + +QP+ ++
Sbjct: 701 SSSVQARRLSQP------ESAEKHVTQRLQPERGSPKKCEAEEAEPPAATQPQTSETQTS 754
Query: 204 EFRETNK 210
E+ +
Sbjct: 755 HLPESER 761
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.8 bits (81), Expect = 0.067
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 31 SVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARS 90
S + ++S SS SSSS +S + S+ +S+T +SC + P A
Sbjct: 2644 SSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAP----------TAGP 2693
Query: 91 GVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQS 150
+ P K Q RP HS + P P + P P + P+ AQ
Sbjct: 2694 SAQAALPTKATKQAGKARPSAHS------PGKKTPAPQPQAPPPQPTQPLQPK---AQAG 2744
Query: 151 KLSKPR 156
S+P+
Sbjct: 2745 AKSRPK 2750
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 33 ARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSS 72
+RAAS +S SSSS +S + S+ +SS+S S+S SS
Sbjct: 2607 SRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
>gi|38570149 WWC family member 3 [Homo sapiens]
Length = 1092
Score = 35.4 bits (80), Expect = 0.088
Identities = 61/254 (24%), Positives = 98/254 (38%), Gaps = 46/254 (18%)
Query: 30 RSVARAASESSLESSSSYNS--ETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGD---L 84
+S+A +S SSL S S +S +TP P + + L+ G D R +
Sbjct: 447 QSLASLSSRSSLSSLSPPSSPLDTPFLPASRDSPLAQLADSCEGPGLGALDRLRAHASAM 506
Query: 85 RDVARSGVASLPP------AKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQE 138
D G+A+L P + H+ P P SAP GT +LR+
Sbjct: 507 GDEDLPGMAALQPHGVPGDGEGPHERG---PPPASAPVGGTVTLREDSAKRLERRARRIS 563
Query: 139 AQTPRSILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPEAF 198
A LA S + +P +E++ P DT+S+ P+
Sbjct: 564 ACLSDYSLASDSGVFEPLTKRNEDAEEPAYG----------------DTASN--GDPQIH 605
Query: 199 FSKLQEFRETNKEECICSHPEPQLPGLRESSGSGVEEDHECVYCYRVNRRLFPVPVDPGT 258
L++ + EC+ H + L+ +G V+ED +V+ R++ P+D GT
Sbjct: 606 VGLLRD----SGSECLLVH----VLQLKNPAGLAVKED------CKVHIRVYLPPLDSGT 651
Query: 259 PCRLCRTPRDQQGP 272
P C + Q P
Sbjct: 652 PNTYCSKALEFQVP 665
>gi|149274646 hypothetical protein LOC57710 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 251 PVPVDPGTPCRLC------RTPRDQQGPGTLAQPAHVRVSIPLSILEPPHRYHIHRRKSF 304
P P+D TPCR TP + GPG AQ S L I+ P H S
Sbjct: 734 PHPLDSRTPCRTAYATTAPMTP-ESSGPGGQAQVTESHES--LEIVSPSSLQQSHAEPSA 790
Query: 305 DASDTLALPRHCLLGWDIFPPKSEKSSAP 333
C GW PP S K+++P
Sbjct: 791 PHQAWQPTASLCPEGWAPTPPPSRKTTSP 819
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 53 STPETSSTSLSTSCPRGRSSV-WGPPDACRGDLRDVARSGVASLPPAKCQHQES-LGRPR 110
+TP + L+T P+G + P + +G L + G + P A + L P
Sbjct: 1154 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS 1213
Query: 111 PHSAPSLGTSSLRDPEPSGRLGDPGPQEAQT 141
P AP+ T + P P G L P P+ A T
Sbjct: 1214 PKGAPT--TPAATPPSPKGGLATPSPKGAPT 1242
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 53 STPETSSTSLSTSCPRGRSSV-WGPPDACRGDLRDVARSGVASLPPAKCQHQES-LGRPR 110
+TP + L+T P+G + P + +G L + G + P A + L P
Sbjct: 1177 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPS 1236
Query: 111 PHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTP 142
P AP+ T + P P G P P+ A TP
Sbjct: 1237 PKGAPT--TPAATPPSPKGGPATPPPKGAPTP 1266
Score = 34.3 bits (77), Expect = 0.20
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 53 STPETSSTSLSTSCPRGRSSV-WGPPDACRGDLRDVARSGVASLPPAKCQHQES-LGRPR 110
+TP + L+T P+G + P + +G L G + P A + L P
Sbjct: 1131 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 111 PHSAPSLGTSSLRDPEPSGRLGDPGPQEAQT 141
P AP+ T + P P G L P P+ A T
Sbjct: 1191 PKGAPT--TPAATPPSPKGGLATPSPKGAPT 1219
Score = 30.8 bits (68), Expect = 2.2
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 40 SLESSSSYNSETPSTPETSSTSLSTSCPRGRSSV-WGPPDACRGDLRDVARSGVASLPPA 98
SL+ + + + TP +P+ +T P+G P + +G L G + P A
Sbjct: 1075 SLKGAPTPPAATPPSPKGGP---ATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAA 1131
Query: 99 KCQHQES-LGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQT 141
+ L P P AP+ T + P P G L P P+ A T
Sbjct: 1132 TPPSPKGGLATPPPKGAPT--TPAATPPSPKGGLATPPPKGAPT 1173
Score = 29.6 bits (65), Expect = 4.8
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 29/119 (24%)
Query: 51 TPSTPETSSTS-LSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQHQESLGRP 109
TPS+ + S TS S +C G + P A +G A+ G +L +E L P
Sbjct: 1643 TPSSLKDSPTSPASVTCKMGATV----PQASKGL---PAKKGPTAL-------KEVLVAP 1688
Query: 110 RPHSAP--------------SLGTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSK 154
P S P S TS P+PS + G GP P +L Q SK
Sbjct: 1689 APESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSK 1747
Score = 28.9 bits (63), Expect = 8.3
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 93 ASLPPAKCQHQESLG--RPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQS 150
A PPA G P P AP+ ++ P P G P P+ A TP ++
Sbjct: 962 APTPPAATPPSPKGGPATPSPKGAPTPPAAT--PPSPKGGPATPSPKGAPTPPAVTPPSP 1019
Query: 151 KLSKPRVTFSEESAVP 166
K S F + ++ P
Sbjct: 1020 KGSPAATPFPKGASTP 1035
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 34.7 bits (78), Expect = 0.15
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 36 ASESSLESSSSYNSET-----PSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARS 90
+S S L +S S + T P+ E SL R S GPP A + +
Sbjct: 1028 SSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPAT 1087
Query: 91 GVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGR--------LGDPGPQEAQTP 142
+ PA+ + PRP + P+ R P PSGR L PGP T
Sbjct: 1088 PLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTA 1147
Query: 143 R 143
R
Sbjct: 1148 R 1148
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 29 RRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVA 88
RRS + ++S SS SSSS +S + S+ +SS+S S+S SS P + + +
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----PSPAKPGPQALP 2660
Query: 89 RSGVASLPPAKCQHQESLGRP----RPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRS 144
+ PP + S +P R + S R P P P P++ Q+ S
Sbjct: 2661 KPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP-----QPSPRDQQSSSS 2715
Score = 33.1 bits (74), Expect = 0.44
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 17/149 (11%)
Query: 29 RRSVARAASESSLESSSSYNSETPSTPETS---------STSLSTSCPRGRSSVWGPPDA 79
RRS + ++ E SS S + S+P + S S S+ CP+ +S PP
Sbjct: 739 RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQT--PPRR 796
Query: 80 CR-GDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQE 138
R G + A+S PP + + S + PS + S P P + G P Q
Sbjct: 797 SRSGSSQPKAKSRT---PPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQG 853
Query: 139 AQTPRSILAQQSKLSKPRVTFSEESAVPK 167
+ T S A + ++ R + E S P+
Sbjct: 854 SIT--SPQANEQSVTPQRRSCFESSPDPE 880
Score = 28.9 bits (63), Expect = 8.3
Identities = 37/135 (27%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 29 RRSVARAASESSLESSSSYNSETPSTP-ETSSTSLSTSCP--------RGRSSVWGPPDA 79
RRS + ++S SS SSSS +S + S+ +SS S +S P R S P +A
Sbjct: 2530 RRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEA 2589
Query: 80 CRGD----------LRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSG 129
R R + S +S + S S+ S +SS S
Sbjct: 2590 VREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP 2649
Query: 130 RLGDPGPQEAQTPRS 144
PGPQ P S
Sbjct: 2650 SPAKPGPQALPKPAS 2664
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 34.7 bits (78), Expect = 0.15
Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
Query: 29 RRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVA 88
RR + A+ S SSSS S +P TS R S PP R
Sbjct: 347 RRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPP-------RRRH 399
Query: 89 RSGVASLPPAKCQH----QESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRS 144
R + PP K +H Q+S + + S G +S + + G P A PR
Sbjct: 400 RPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRK 459
Query: 145 ILAQQSKLSKPRVTFSEESAVPKRSWRLRPYLGYDWIAGSLDTSSSITSQPE 196
+ +S+ K + +S +R +R + S D+ SS +S+ E
Sbjct: 460 VELSESEEDKGGKMAAADSVQQRRQYRRQNQ------QSSSDSGSSSSSEDE 505
Score = 30.4 bits (67), Expect = 2.8
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 51 TPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARSGVA---SLPPAKCQHQESLG 107
+PS P T+ P+ R+S PP R V+ S S P K +
Sbjct: 605 SPSPPPKRRTASPPPPPKRRASPSPPPK------RRVSHSPPPKQRSSPVTKRRSPSLSS 658
Query: 108 RPRPHSAPSLGTSSLRDPEPSGRLG-DPGPQEAQTPRS 144
+ R S+PS T R P+P+ R P P+ QT S
Sbjct: 659 KHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSS 696
>gi|254039650 synaptotagmin-like 5 isoform 1 [Homo sapiens]
Length = 730
Score = 34.3 bits (77), Expect = 0.20
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 5 EELAQLRLLNLELL--------RQLWV-GQDAVRRSVAR---AASESSLESSSSYNSETP 52
+++AQLR++ E +Q+ V G D VR+S+ R A E + + ++E
Sbjct: 107 DKIAQLRIITGEWFFEEKAKRFKQVNVLGTDVVRQSILRRSPGAEEVQSQEQTRQDAEKS 166
Query: 53 STPETSSTSLSTSCPRGRSSVWGP-PDACRGDL----RDVARSGVASLPPAKCQHQESLG 107
T + S P+ + + A RG++ D RS L QH SL
Sbjct: 167 DTSPVAGKKASHDGPKRKGFLLSKFRSATRGEIITPKTDTGRSYSLDLDG---QHFRSLK 223
Query: 108 RPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTP 142
P S G+S L D EP R TP
Sbjct: 224 SPPGSDRGSTGSSDLNDQEPGPRTPKSSRSNGVTP 258
>gi|254039648 synaptotagmin-like 5 isoform 2 [Homo sapiens]
Length = 752
Score = 34.3 bits (77), Expect = 0.20
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 5 EELAQLRLLNLELL--------RQLWV-GQDAVRRSVAR---AASESSLESSSSYNSETP 52
+++AQLR++ E +Q+ V G D VR+S+ R A E + + ++E
Sbjct: 107 DKIAQLRIITGEWFFEEKAKRFKQVNVLGTDVVRQSILRRSPGAEEVQSQEQTRQDAEKS 166
Query: 53 STPETSSTSLSTSCPRGRSSVWGP-PDACRGDL----RDVARSGVASLPPAKCQHQESLG 107
T + S P+ + + A RG++ D RS L QH SL
Sbjct: 167 DTSPVAGKKASHDGPKRKGFLLSKFRSATRGEIITPKTDTGRSYSLDLDG---QHFRSLK 223
Query: 108 RPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTP 142
P S G+S L D EP R TP
Sbjct: 224 SPPGSDRGSTGSSDLNDQEPGPRTPKSSRSNGVTP 258
>gi|20270305 synaptotagmin-like 5 isoform 1 [Homo sapiens]
Length = 730
Score = 34.3 bits (77), Expect = 0.20
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 5 EELAQLRLLNLELL--------RQLWV-GQDAVRRSVAR---AASESSLESSSSYNSETP 52
+++AQLR++ E +Q+ V G D VR+S+ R A E + + ++E
Sbjct: 107 DKIAQLRIITGEWFFEEKAKRFKQVNVLGTDVVRQSILRRSPGAEEVQSQEQTRQDAEKS 166
Query: 53 STPETSSTSLSTSCPRGRSSVWGP-PDACRGDL----RDVARSGVASLPPAKCQHQESLG 107
T + S P+ + + A RG++ D RS L QH SL
Sbjct: 167 DTSPVAGKKASHDGPKRKGFLLSKFRSATRGEIITPKTDTGRSYSLDLDG---QHFRSLK 223
Query: 108 RPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTP 142
P S G+S L D EP R TP
Sbjct: 224 SPPGSDRGSTGSSDLNDQEPGPRTPKSSRSNGVTP 258
>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 16 ELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWG 75
ELL ++ GQ A ++ + +A+ SS + + S S+ ETS S G G
Sbjct: 111 ELLEKITEGQAAKKQKLEQASGASSSQEAGS--SQAAKEDETSDGQAS-----GEQEEAG 163
Query: 76 PPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSL 117
P + G +GVA LP + Q + RPRP A L
Sbjct: 164 PSSSQAGP-----SNGVAPLPRSALLVQLATARPRPVKARPL 200
>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 33.9 bits (76), Expect = 0.26
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 16 ELLRQLWVGQDAVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWG 75
ELL ++ GQ A ++ + +A+ SS + + S S+ ETS S G G
Sbjct: 111 ELLEKITEGQAAKKQKLEQASGASSSQEAGS--SQAAKEDETSDGQAS-----GEQEEAG 163
Query: 76 PPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSL 117
P + G +GVA LP + Q + RPRP A L
Sbjct: 164 PSSSQAGP-----SNGVAPLPRSALLVQLATARPRPVKARPL 200
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 33.9 bits (76), Expect = 0.26
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 27 AVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRD 86
A+ +A S LE S Y+SE + S+++SC G WG R
Sbjct: 1421 ALEPGLASCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPP 1480
Query: 87 VARSGVASLP--PA------KCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLG 132
A SG P PA + + + + GR + + + T R + SGR G
Sbjct: 1481 KANSGPKPYPRLPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGRRG 1534
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 33.9 bits (76), Expect = 0.26
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 27 AVRRSVARAASESSLESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRD 86
A+ +A S LE S Y+SE + S+++SC G WG R
Sbjct: 1481 ALEPGLASCLSPKCLEISIEYDSEDEQEAGSGGISITSSCYPGDGEAWGTATVGRPRGPP 1540
Query: 87 VARSGVASLP--PA------KCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLG 132
A SG P PA + + + + GR + + + T R + SGR G
Sbjct: 1541 KANSGPKPYPRLPAWEKGEPERRGRSATGRAKEPLSRATETGEARGQDGSGRRG 1594
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 33.5 bits (75), Expect = 0.33
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Query: 42 ESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQ 101
+SS + E P P+T++ L S + GPP +L+ + V LP
Sbjct: 352 DSSMTRPQELPELPKTTALELQESSVASAMELPGPPATSMPELQGPPVTPVLELPGPSAT 411
Query: 102 HQESLGRPRPHSAPSL-GTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSKPR 156
L P P L G + PE G P PQ +Q + A L P+
Sbjct: 412 PVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEPPQ 467
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 33.5 bits (75), Expect = 0.33
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Query: 42 ESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGPPDACRGDLRDVARSGVASLPPAKCQ 101
+SS + E P P+T++ L S + GPP +L+ + V LP
Sbjct: 352 DSSMTRPQELPELPKTTALELQESSVASAMELPGPPATSMPELQGPPVTPVLELPGPSAT 411
Query: 102 HQESLGRPRPHSAPSL-GTSSLRDPEPSGRLGDPGPQEAQTPRSILAQQSKLSKPR 156
L P P L G + PE G P PQ +Q + A L P+
Sbjct: 412 PVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEPPQ 467
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.44
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 28 VRRSVARAASESSLESSSSYNSETP-----------STPETSSTS--LSTSCPRGRSSVW 74
VRR V+ A + +SS++ TP PETSS+ T PR S
Sbjct: 41 VRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLS--- 97
Query: 75 GPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDP 134
PP R R+G PP H RP AP L LR P G G P
Sbjct: 98 -PPGRARS-----PRNG----PPLLVSHTGFPSPNRPRPAPHLLGHRLRG--PGGHKG-P 144
Query: 135 GP 136
GP
Sbjct: 145 GP 146
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.1 bits (74), Expect = 0.44
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 41 LESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGP-------PDACRGDLR-------- 85
L +SS+ SE PST +TS S S P W P P G+LR
Sbjct: 243 LPRTSSFLSEVPSTRPLCATSSSHSAP--LPFFWSPLRNPSPRPAPACGELRLGRLSPPR 300
Query: 86 -DVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRS 144
D S +H+ P P + P+ G +P S R GP AQ P S
Sbjct: 301 ADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRR----GPGPAQGPPS 356
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.44
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 28 VRRSVARAASESSLESSSSYNSETP-----------STPETSSTS--LSTSCPRGRSSVW 74
VRR V+ A + +SS++ TP PETSS+ T PR S
Sbjct: 41 VRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLS--- 97
Query: 75 GPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDP 134
PP R R+G PP H RP AP L LR P G G P
Sbjct: 98 -PPGRARS-----PRNG----PPLLVSHTGFPSPNRPRPAPHLLGHRLRG--PGGHKG-P 144
Query: 135 GP 136
GP
Sbjct: 145 GP 146
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.1 bits (74), Expect = 0.44
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 41 LESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGP-------PDACRGDLR-------- 85
L +SS+ SE PST +TS S S P W P P G+LR
Sbjct: 243 LPRTSSFLSEVPSTRPLCATSSSHSAP--LPFFWSPLRNPSPRPAPACGELRLGRLSPPR 300
Query: 86 -DVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRS 144
D S +H+ P P + P+ G +P S R GP AQ P S
Sbjct: 301 ADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRR----GPGPAQGPPS 356
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.44
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 28 VRRSVARAASESSLESSSSYNSETP-----------STPETSSTS--LSTSCPRGRSSVW 74
VRR V+ A + +SS++ TP PETSS+ T PR S
Sbjct: 41 VRRGVSPVAQADPAQDASSFSYSTPVQTATNPGPRHLRPETSSSKQHFRTKAPRNLS--- 97
Query: 75 GPPDACRGDLRDVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDP 134
PP R R+G PP H RP AP L LR P G G P
Sbjct: 98 -PPGRARS-----PRNG----PPLLVSHTGFPSPNRPRPAPHLLGHRLRG--PGGHKG-P 144
Query: 135 GP 136
GP
Sbjct: 145 GP 146
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.1 bits (74), Expect = 0.44
Identities = 35/120 (29%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 41 LESSSSYNSETPSTPETSSTSLSTSCPRGRSSVWGP-------PDACRGDLR-------- 85
L +SS+ SE PST +TS S S P W P P G+LR
Sbjct: 243 LPRTSSFLSEVPSTRPLCATSSSHSAP--LPFFWSPLRNPSPRPAPACGELRLGRLSPPR 300
Query: 86 -DVARSGVASLPPAKCQHQESLGRPRPHSAPSLGTSSLRDPEPSGRLGDPGPQEAQTPRS 144
D S +H+ P P + P+ G +P S R GP AQ P S
Sbjct: 301 ADTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRR----GPGPAQGPPS 356
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,623,627
Number of Sequences: 37866
Number of extensions: 1149495
Number of successful extensions: 5313
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 5062
Number of HSP's gapped (non-prelim): 447
length of query: 388
length of database: 18,247,518
effective HSP length: 104
effective length of query: 284
effective length of database: 14,309,454
effective search space: 4063884936
effective search space used: 4063884936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.