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Search of human proteins with 13775180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13775180 testis expressed sequence 13A [Homo sapiens]
(409 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13775180 testis expressed sequence 13A [Homo sapiens] 844 0.0
gi|13775178 testis expressed 13B [Homo sapiens] 283 3e-76
gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 114 2e-25
gi|239752412 PREDICTED: similar to testis expressed sequence 13A... 114 2e-25
gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 114 2e-25
gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens] 112 8e-25
gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens] 112 8e-25
gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo ... 112 8e-25
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 45 1e-04
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 45 1e-04
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 45 1e-04
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 45 1e-04
gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens] 40 0.005
gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens] 40 0.005
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 39 0.007
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 38 0.015
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.055
gi|5453567 craniofacial development protein 1 [Homo sapiens] 36 0.055
gi|38570058 hypothetical protein LOC80129 [Homo sapiens] 36 0.072
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 36 0.072
gi|30795231 brain abundant, membrane attached signal protein 1 [... 35 0.094
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa... 35 0.094
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 35 0.094
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 35 0.094
gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens] 35 0.12
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens] 35 0.12
gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens] 35 0.12
gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens] 35 0.12
gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens] 35 0.12
gi|21361891 SH2 domain containing 4A [Homo sapiens] 35 0.16
>gi|13775180 testis expressed sequence 13A [Homo sapiens]
Length = 409
Score = 844 bits (2181), Expect = 0.0
Identities = 409/409 (100%), Positives = 409/409 (100%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP
Sbjct: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET
Sbjct: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
Query: 121 ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA 180
ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA
Sbjct: 121 ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA 180
Query: 181 AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAASMETTEK 240
AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAASMETTEK
Sbjct: 181 AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAASMETTEK 240
Query: 241 LERILLQLLGDADQEKYTYWGQKEGDLRSVETATSYFSGTTNPWSRASSEPLPVQLPASY 300
LERILLQLLGDADQEKYTYWGQKEGDLRSVETATSYFSGTTNPWSRASSEPLPVQLPASY
Sbjct: 241 LERILLQLLGDADQEKYTYWGQKEGDLRSVETATSYFSGTTNPWSRASSEPLPVQLPASY 300
Query: 301 SYSYSSPFSSFSDIPTISPPQATVTAPVPPQLPSDWEAFDTSLWSDGGPHRIDHQEHPRD 360
SYSYSSPFSSFSDIPTISPPQATVTAPVPPQLPSDWEAFDTSLWSDGGPHRIDHQEHPRD
Sbjct: 301 SYSYSSPFSSFSDIPTISPPQATVTAPVPPQLPSDWEAFDTSLWSDGGPHRIDHQEHPRD 360
Query: 361 RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGKGIWLQKPH 409
RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGKGIWLQKPH
Sbjct: 361 RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGKGIWLQKPH 409
>gi|13775178 testis expressed 13B [Homo sapiens]
Length = 312
Score = 283 bits (723), Expect = 3e-76
Identities = 153/218 (70%), Positives = 169/218 (77%), Gaps = 12/218 (5%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MALRPEDPSSGFRH NVVAFI EKMARHTKGPEFY ENISLSWE+VEDKLRAILEDSEVP
Sbjct: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
SEVKEACTWGSLALGVRFAHRQ QLQ RV+WL GFAKLH+SAA LAS+L +L+EQQE
Sbjct: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
Query: 121 ERKEAASRLRMAQTSLVEVQKERD--------KELVSPHEWEQGAGWPGLATAGGVCTEG 172
E EA +L++ +TSL EVQ+ERD EL P Q +PGLATAGG TEG
Sbjct: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGDWTEG 180
Query: 173 AAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAM 210
A E+E+E AVAAAGAAGGKG E+R E AP E +
Sbjct: 181 AGEQEKE-AVAAAGAAGGKG---EERYAEAGPAPAEVL 214
>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 114 bits (285), Expect = 2e-25
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 14/212 (6%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH++V+ FIN ++ GP FY+ S W +VED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL VR A RQ + H VR L A+ ++ + AL S L++LR + E
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA 180
AA++L +AQ +L + ERD + E+ +P A G E+
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIER---FPQAAPLAHEIMSGPQAEQN-- 171
Query: 181 AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAP 212
GAA A E+Q D+ + A P
Sbjct: 172 -----GAAACPLATEQQSDMVAMGTHANAQMP 198
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 368 QQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGK 401
Q++P + P +W CPWC A+NFS R C+ C K
Sbjct: 607 QEKPASFPVPVNWKCPWCKAINFSWRTACYKCKK 640
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 272 TATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPF-SSFSDIPTISPPQAT--VTAPV 328
T Y G +PW++ PLPV P + + PF F +P + P T A V
Sbjct: 201 TDVLYVPGPLSPWAQGMQPPLPVPHP----FPHPPPFPMKFPSLPPLPPAVVTGAEAAAV 256
Query: 329 PPQLP 333
P Q+P
Sbjct: 257 PLQMP 261
>gi|239752412 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 114 bits (285), Expect = 2e-25
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 14/212 (6%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH++V+ FIN ++ GP FY+ S W +VED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL VR A RQ + H VR L A+ ++ + AL S L++LR + E
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA 180
AA++L +AQ +L + ERD + E+ +P A G E+
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIER---FPQAAPLAHEIMSGPQAEQN-- 171
Query: 181 AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAP 212
GAA A E+Q D+ + A P
Sbjct: 172 -----GAAACPLATEQQSDMVAMGTHANAQMP 198
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 368 QQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGK 401
Q++P + P +W CPWC A+NFS R C+ C K
Sbjct: 607 QEKPASFPVPVNWKCPWCKAINFSWRTACYKCKK 640
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 272 TATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPF-SSFSDIPTISPPQAT--VTAPV 328
T Y G +PW++ PLPV P + + PF F +P + P T A V
Sbjct: 201 TDVLYVPGPLSPWAQGMQPPLPVPHP----FPHPPPFPMKFPSLPPLPPAVVTGAEAAAV 256
Query: 329 PPQLP 333
P Q+P
Sbjct: 257 PLQMP 261
>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 714
Score = 114 bits (285), Expect = 2e-25
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 14/212 (6%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH++V+ FIN ++ GP FY+ S W +VED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL VR A RQ + H VR L A+ ++ + AL S L++LR + E
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVCTEGAAEEEEEA 180
AA++L +AQ +L + ERD + E+ +P A G E+
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIER---FPQAAPLAHEIMSGPQAEQN-- 171
Query: 181 AVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAP 212
GAA A E+Q D+ + A P
Sbjct: 172 -----GAAACPLATEQQSDMVAMGTHANAQMP 198
Score = 46.6 bits (109), Expect = 4e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 368 QQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDCGK 401
Q++P + P +W CPWC A+NFS R C+ C K
Sbjct: 669 QEKPASFPVPVNWKCPWCKAINFSWRTACYKCKK 702
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 272 TATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPF-SSFSDIPTISPPQAT--VTAPV 328
T Y G +PW++ PLPV P + + PF F +P + P T A V
Sbjct: 201 TDVLYVPGPLSPWAQGMQPPLPVPHP----FPHPPPFPMKFPSLPPLPPAVVTGAEAAAV 256
Query: 329 PPQLP 333
P Q+P
Sbjct: 257 PLQMP 261
>gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 890
Score = 112 bits (279), Expect = 8e-25
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FIN ++ R+ P FY S W +VED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL V+ A RQ + ++V WL G + ++ + AL S L++LR
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ERKEAASRLRMAQTSLVEVQKERD 144
E +E A++L + Q +L +V ERD
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERD 140
Score = 48.1 bits (113), Expect = 1e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 361 RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDC 399
++ SE QQ+P P +W CPWCNA+NF R C C
Sbjct: 837 KKASESQQQKPASCSSPVNWACPWCNAMNFPRNKVCSKC 875
>gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 993
Score = 112 bits (279), Expect = 8e-25
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FIN ++ R+ P FY S W +VED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL V+ A RQ + ++V WL G + ++ + AL S L++LR
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ERKEAASRLRMAQTSLVEVQKERD 144
E +E A++L + Q +L +V ERD
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERD 140
Score = 48.1 bits (113), Expect = 1e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 361 RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDC 399
++ SE QQ+P P +W CPWCNA+NF R C C
Sbjct: 940 KKASESQQQKPASCSSPVNWACPWCNAMNFPRNKVCSKC 978
>gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo
sapiens]
Length = 993
Score = 112 bits (279), Expect = 8e-25
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Query: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FIN ++ R+ P FY S W +VED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
+K ACTW +LAL V+ A RQ + ++V WL G + ++ + AL S L++LR
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ERKEAASRLRMAQTSLVEVQKERD 144
E +E A++L + Q +L +V ERD
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERD 140
Score = 48.1 bits (113), Expect = 1e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 361 RRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDC 399
++ SE QQ+P P +W CPWCNA+NF R C C
Sbjct: 940 KKASESQQQKPASCSSPVNWACPWCNAMNFPRNKVCSKC 978
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 45.1 bits (105), Expect = 1e-04
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 31/262 (11%)
Query: 24 KMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQA 83
++ + + E +E + E++ED+L+A ED+++ EV G ++ Q
Sbjct: 1529 ELEKSKRALETQMEEMKTQLEELEDELQAT-EDAKLRLEVNMQALKGQFERDLQARDEQN 1587
Query: 84 QLQRHRV-RWLHGFAK----------LHKSAAQALASDLKKLREQQETE---RKEAASRL 129
+ +R ++ R LH + L +A + L DLK L Q ++ R+EA +L
Sbjct: 1588 EEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 1647
Query: 130 RMAQTSLVEVQKE-------RDKELVSPHEWEQGAG---------WPGLATAGGVCTEGA 173
R Q + + Q+E RD+ + E E+ A LA A +
Sbjct: 1648 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1707
Query: 174 AEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAA 233
E+EE A A+ +G ++E+R +E A +E + M + +A
Sbjct: 1708 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAE 1767
Query: 234 SMETTEKLERILLQLLGDADQE 255
+ ER Q A Q+
Sbjct: 1768 QLSNELATERSTAQKNESARQQ 1789
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 45.1 bits (105), Expect = 1e-04
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 31/262 (11%)
Query: 24 KMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQA 83
++ + + E +E + E++ED+L+A ED+++ EV G ++ Q
Sbjct: 1536 ELEKSKRALETQMEEMKTQLEELEDELQAT-EDAKLRLEVNMQALKGQFERDLQARDEQN 1594
Query: 84 QLQRHRV-RWLHGFAK----------LHKSAAQALASDLKKLREQQETE---RKEAASRL 129
+ +R ++ R LH + L +A + L DLK L Q ++ R+EA +L
Sbjct: 1595 EEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 1654
Query: 130 RMAQTSLVEVQKE-------RDKELVSPHEWEQGAG---------WPGLATAGGVCTEGA 173
R Q + + Q+E RD+ + E E+ A LA A +
Sbjct: 1655 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1714
Query: 174 AEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAA 233
E+EE A A+ +G ++E+R +E A +E + M + +A
Sbjct: 1715 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAE 1774
Query: 234 SMETTEKLERILLQLLGDADQE 255
+ ER Q A Q+
Sbjct: 1775 QLSNELATERSTAQKNESARQQ 1796
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 45.1 bits (105), Expect = 1e-04
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 31/262 (11%)
Query: 24 KMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQA 83
++ + + E +E + E++ED+L+A ED+++ EV G ++ Q
Sbjct: 1536 ELEKSKRALETQMEEMKTQLEELEDELQAT-EDAKLRLEVNMQALKGQFERDLQARDEQN 1594
Query: 84 QLQRHRV-RWLHGFAK----------LHKSAAQALASDLKKLREQQETE---RKEAASRL 129
+ +R ++ R LH + L +A + L DLK L Q ++ R+EA +L
Sbjct: 1595 EEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 1654
Query: 130 RMAQTSLVEVQKE-------RDKELVSPHEWEQGAG---------WPGLATAGGVCTEGA 173
R Q + + Q+E RD+ + E E+ A LA A +
Sbjct: 1655 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1714
Query: 174 AEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAA 233
E+EE A A+ +G ++E+R +E A +E + M + +A
Sbjct: 1715 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAE 1774
Query: 234 SMETTEKLERILLQLLGDADQE 255
+ ER Q A Q+
Sbjct: 1775 QLSNELATERSTAQKNESARQQ 1796
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 45.1 bits (105), Expect = 1e-04
Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 31/262 (11%)
Query: 24 KMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQA 83
++ + + E +E + E++ED+L+A ED+++ EV G ++ Q
Sbjct: 1529 ELEKSKRALETQMEEMKTQLEELEDELQAT-EDAKLRLEVNMQALKGQFERDLQARDEQN 1587
Query: 84 QLQRHRV-RWLHGFAK----------LHKSAAQALASDLKKLREQQETE---RKEAASRL 129
+ +R ++ R LH + L +A + L DLK L Q ++ R+EA +L
Sbjct: 1588 EEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGREEAIKQL 1647
Query: 130 RMAQTSLVEVQKE-------RDKELVSPHEWEQGAG---------WPGLATAGGVCTEGA 173
R Q + + Q+E RD+ + E E+ A LA A +
Sbjct: 1648 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1707
Query: 174 AEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEARAA 233
E+EE A A+ +G ++E+R +E A +E + M + +A
Sbjct: 1708 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAE 1767
Query: 234 SMETTEKLERILLQLLGDADQE 255
+ ER Q A Q+
Sbjct: 1768 QLSNELATERSTAQKNESARQQ 1789
>gi|20127479 RNA binding motif protein 10 isoform 1 [Homo sapiens]
Length = 930
Score = 39.7 bits (91), Expect = 0.005
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 340 DTSLWSDGGPHRIDHQEHPRDRRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDC 399
D + W + H ++ YS+P +P + DW C C NF RR+ CF C
Sbjct: 183 DATRWMEANQHSLNILGQKVSMHYSDP---KPKINE---DWLCNKCGVQNFKRREKCFKC 236
Query: 400 G 400
G
Sbjct: 237 G 237
>gi|23111018 RNA binding motif protein 10 isoform 2 [Homo sapiens]
Length = 852
Score = 39.7 bits (91), Expect = 0.005
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 340 DTSLWSDGGPHRIDHQEHPRDRRYSEPHQQRPPVYRRPGDWDCPWCNAVNFSRRDTCFDC 399
D + W + H ++ YS+P +P + DW C C NF RR+ CF C
Sbjct: 106 DATRWMEANQHSLNILGQKVSMHYSDP---KPKINE---DWLCNKCGVQNFKRREKCFKC 159
Query: 400 G 400
G
Sbjct: 160 G 160
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 39.3 bits (90), Expect = 0.007
Identities = 63/285 (22%), Positives = 111/285 (38%), Gaps = 38/285 (13%)
Query: 45 KVEDKLRAILEDS-EVPSEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSA 103
K++ K+ ++ + + K+A + G ++GV+F+ + F K + A
Sbjct: 832 KLQSKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRESRSP--------FLKPDERA 883
Query: 104 AQALASDLKKLREQQETERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLA 163
+A + ++T+ K A + T K + K + + G G
Sbjct: 884 PTEMAKAAPGSTKPKKTKVKAKAGAKKTKGT------KGKTKPSKTRKKVRSGGG----- 932
Query: 164 TAGGVCTEGAAEEEEEAAVAAAGAAGGKGAEE-----EQRDVEVVAAPVEAMAPPVEAGA 218
+GG + G ++ A + + AAG KGAEE E+R +V + P APP A
Sbjct: 933 -SGG--SGGQVSLKKSKADSCSQAAGTKGAEETSWSGEERAAKVPSTPPPKAAPPPPALT 989
Query: 219 APMETQFPHVEARAASMETTEKLERILLQLLGDADQEKYTYWGQKEGDLRSVETATSYFS 278
+T + S E E ++ G A++E+ ++E + E
Sbjct: 990 PDSQTVDSSCKTPEVSFLPEEATEEAGVR--GGAEEEE-----EEEEEEEEEEEEEEQQP 1042
Query: 279 GTTNPWSRASSEPLPVQLPASY---SYSYSSPFSSFSDIPTISPP 320
TT S A++ P S S + P S S +PT+ PP
Sbjct: 1043 ATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPP 1087
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 38.1 bits (87), Expect = 0.015
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 281 TNPWSRASSE--PLPVQLPASYSYSYSSPFSSFSDIPTISPPQATVTAPVPPQLPS 334
+NP S ++S P+P P S S+P + +P +PP A + APVPP P+
Sbjct: 272 SNPLSVSASVLVPVPASAPPSGPVPLSAPAPAPLSVPVSAPPLALIQAPVPPSAPT 327
Score = 32.3 bits (72), Expect = 0.80
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 283 PWSRASSEPLPVQLPASYSYSYSSPFSSFSDIPTISPPQATV--TAPVPPQLPS 334
P S + +P+ +PA +S P + +P SPP A V AP PP +P+
Sbjct: 214 PHSVPDAFQVPLSVPAPVPHSGLVPVQVATSVPAPSPPLAPVPALAPAPPSVPT 267
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 36.2 bits (82), Expect = 0.055
Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 156 GAGWPGLATAGGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVE 215
GAG PG A G + EE+EEA AA GAA G R AAPV + +
Sbjct: 1296 GAGAPGPAEEDGEDEDEDEEEDEEA--AAPGAAAGPRGPGRAR-----AAPVPVVVSSAD 1348
Query: 216 AGAA-PMETQFPHVEARAASMETTEKLERILLQLLGDADQEKYTYWGQKEGDLRSVETAT 274
A AA P+ R A +LER + D Y + + + SV+
Sbjct: 1349 ADAARPLRGLLK--SPRGADEPEDSELERKRKMVSFHGDVTVYLFDQETPTNELSVQAPP 1406
Query: 275 SYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPFSSF-------SDIPTISPP 320
G T+P S + P P PA+ + S S F D P + PP
Sbjct: 1407 ---EGDTDP-STPPAPPTPPH-PATPGDGFPSNDSGFGGSFEWAEDFPLLPPP 1454
>gi|5453567 craniofacial development protein 1 [Homo sapiens]
Length = 299
Score = 36.2 bits (82), Expect = 0.055
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 31/250 (12%)
Query: 102 SAAQALASDLKKLREQQETERKEAASRL----RMAQTSLVEVQKERDKELVSPHEWEQGA 157
S + D+ +L ++ E + +E + R AQ+ + +K R L E E+ A
Sbjct: 21 SGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQS--IPARKRRQGGLSLEEEEEEDA 78
Query: 158 GWPGLATAGGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAP----- 212
+EG++ EEE+ A G + A +++ D E+ A+ + + P
Sbjct: 79 NSE---------SEGSSSEEEDDAAEQEKGIGSEDARKKKED-ELWASFLNDVGPKSKVP 128
Query: 213 ---PVEAGAAPMETQFPHVEARAASMETTEKLERILLQLLGDADQEKYTYWGQKEGDLRS 269
V+ G ET + +A +E ++ E++ + + D E+ KE D S
Sbjct: 129 PSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRV--TKEVDATS 186
Query: 270 VETATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPFSSFSDIPTISPPQATVTAPVP 329
E A S+F +A+ LPA SS SS + I + ++
Sbjct: 187 KE-AKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSL--LGKIGAKKQKMSTLEK 243
Query: 330 PQLPSDWEAF 339
+L DWE+F
Sbjct: 244 SKL--DWESF 251
>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
Length = 715
Score = 35.8 bits (81), Expect = 0.072
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 18 VAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVPSEVKEACTWGSLALGVR 77
V +NEK+ + +K E + +S + K E+ L L D P E + + L L +R
Sbjct: 140 VVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQ-LRDCLDPDERNDKASDEDLILKLR 198
Query: 78 FAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQETERKEAAS------RLRM 131
++ + + ++ L +H+ A+A + +L + E+K+AAS +L
Sbjct: 199 DLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQ 258
Query: 132 AQTSLVEVQKERDKEL 147
S VE ++ ++E+
Sbjct: 259 DLLSAVEAKEALEREV 274
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 35.8 bits (81), Expect = 0.072
Identities = 57/241 (23%), Positives = 75/241 (31%), Gaps = 27/241 (11%)
Query: 95 GFAKLHKSAAQALASDLKKLREQQETERKEAASRLRMAQTSLVEVQKERDKELVSPHEWE 154
G + H L S K+ ++A S L+ ++ + +
Sbjct: 455 GKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAA 514
Query: 155 QGAGWPGLATAGGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPV 214
A P LA A AA AA A A A AAP A AP
Sbjct: 515 AAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPA--------------AAPAVAAAPAA 560
Query: 215 EAGAAPMETQFPHVEARAASMETTEKLERILLQLLGDADQEKYTYWGQK----EGDLRSV 270
A AAP +Q P V AS + A Q + G K EG ++
Sbjct: 561 AASAAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLKAINVEGPVQGA 620
Query: 271 ETATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPFSSFSDIPTISPPQATVTAPVPP 330
+ S F P S A PA S S SS +P P ++P P
Sbjct: 621 QALGSSFKPVQAPGSGA---------PAPAGISGSDLQSSGGPLPDARPGAVQASSPAPL 671
Query: 331 Q 331
Q
Sbjct: 672 Q 672
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 35.4 bits (80), Expect = 0.094
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 110 DLKKLREQQETERKEAASRLRMAQTSLVEVQKERDKELVSPHEWEQGAGWPGLATAGGVC 169
D + E++E E+ AA++ + + + + + P EQ PG A AGG
Sbjct: 61 DAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPA-AGGEA 119
Query: 170 TEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVE 229
+ AAE A +AA AAG + ++EE + A A GA +++ E
Sbjct: 120 PK-AAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSE 178
Query: 230 ARAASMETTEKLE 242
A +S ET E
Sbjct: 179 AAPSSKETPAATE 191
>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
sapiens]
Length = 1352
Score = 35.4 bits (80), Expect = 0.094
Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 48/243 (19%)
Query: 116 EQQETERKEAASRLRMAQTSLVEVQKE----------RDKELVSPHEWEQGAGWPGLATA 165
EQQ+ E +E +L + +E QKE R+KEL E EQ +
Sbjct: 374 EQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQRRHY------ 427
Query: 166 GGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
E EEE + EEEQR +E++ + + Q
Sbjct: 428 ----EEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQL-------------LHEQA 470
Query: 226 PHVEARAASMETTEKLERILLQLLGDADQ--------------EKYTYWGQKEGDLRSVE 271
+E + +E + ER+ QL + D EK + KEG S +
Sbjct: 471 LLLEYKRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEK 530
Query: 272 TATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPFSSFSDIPTISPPQA-TVTAPVPP 330
A + + +R SS +P ++ S P S I + P + + PV P
Sbjct: 531 PAWAKEVEERSRLNRQSSPAMPHKVANRISDPNLPPRSESFSISGVQPARTPPMLRPVDP 590
Query: 331 QLP 333
Q+P
Sbjct: 591 QIP 593
>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
sapiens]
Length = 1360
Score = 35.4 bits (80), Expect = 0.094
Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 48/243 (19%)
Query: 116 EQQETERKEAASRLRMAQTSLVEVQKE----------RDKELVSPHEWEQGAGWPGLATA 165
EQQ+ E +E +L + +E QKE R+KEL E EQ +
Sbjct: 374 EQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRREKELRKQQEREQRRHY------ 427
Query: 166 GGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
E EEE + EEEQR +E++ + + Q
Sbjct: 428 ----EEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQL-------------LHEQA 470
Query: 226 PHVEARAASMETTEKLERILLQLLGDADQ--------------EKYTYWGQKEGDLRSVE 271
+E + +E + ER+ QL + D EK + KEG S +
Sbjct: 471 LLLEYKRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEK 530
Query: 272 TATSYFSGTTNPWSRASSEPLPVQLPASYSYSYSSPFSSFSDIPTISPPQA-TVTAPVPP 330
A + + +R SS +P ++ S P S I + P + + PV P
Sbjct: 531 PAWAKEVEERSRLNRQSSPAMPHKVANRISDPNLPPRSESFSISGVQPARTPPMLRPVDP 590
Query: 331 QLP 333
Q+P
Sbjct: 591 QIP 593
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.4 bits (80), Expect = 0.094
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 104 AQALASDLKKLREQQETERKEAASRLRMAQTSLV--EVQKERDKE------------LVS 149
A+A A + ++++E + A+S L + V EVQ E KE +
Sbjct: 1264 ARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEAVQLE 1323
Query: 150 PHEWEQGAGWPGLATAGGVCTEGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVV 203
+ E+G G+ TEG ++EEEA + GG+G +EE +E V
Sbjct: 1324 ETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGGEGLQEEGVQLEEV 1377
Score = 30.4 bits (67), Expect = 3.0
Identities = 42/130 (32%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
Query: 170 TEGA-AEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAP----VEAMAPPVEAGAAPMETQ 224
+EGA A+E EEAA A G + E ++ E A P VEA+ VE A E Q
Sbjct: 1935 SEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQ 1994
Query: 225 --FPHVEARAASMETTEKLERILLQLLGDADQEKYTYWGQKEG-DLRSVETATSYFSGTT 281
VEA A E E E + G Q K EG + + VE T G
Sbjct: 1995 PESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPK------SEGEEAQEVEGETQKTEGDA 2048
Query: 282 NPWSRASSEP 291
P S P
Sbjct: 2049 QPESDGVEAP 2058
>gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]
Length = 1464
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 175 EEEEEAAVAAAGAAGGKGAEE---------EQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
EEE+EAA AAA AA A + +VE VEA P VEA +E
Sbjct: 1234 EEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEAAE 1293
Query: 226 PHVEARAASMETTEKL 241
P+ EA E E +
Sbjct: 1294 PNGEAEGPDGEAAEPI 1309
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 171 EGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEA 230
E E+E AA AAA Q + + VEA P VEA +E P VEA
Sbjct: 1232 EEEEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEA 1291
>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 175 EEEEEAAVAAAGAAGGKGAEE---------EQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
EEE+EAA AAA AA A + +VE VEA P VEA +E
Sbjct: 1358 EEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEAAE 1417
Query: 226 PHVEARAASMETTEKL 241
P+ EA E E +
Sbjct: 1418 PNGEAEGPDGEAAEPI 1433
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 171 EGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEA 230
E E+E AA AAA Q + + VEA P VEA +E P VEA
Sbjct: 1356 EEEEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEA 1415
>gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]
Length = 1462
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 175 EEEEEAAVAAAGAAGGKGAEE---------EQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
EEE+EAA AAA AA A + +VE VEA P VEA +E
Sbjct: 1232 EEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEAAE 1291
Query: 226 PHVEARAASMETTEKL 241
P+ EA E E +
Sbjct: 1292 PNGEAEGPDGEAAEPI 1307
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 171 EGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEA 230
E E+E AA AAA Q + + VEA P VEA +E P VEA
Sbjct: 1230 EEEEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEA 1289
>gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 175 EEEEEAAVAAAGAAGGKGAEE---------EQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
EEE+EAA AAA AA A + +VE VEA P VEA +E
Sbjct: 1358 EEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEAAE 1417
Query: 226 PHVEARAASMETTEKL 241
P+ EA E E +
Sbjct: 1418 PNGEAEGPDGEAAEPI 1433
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 171 EGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEA 230
E E+E AA AAA Q + + VEA P VEA +E P VEA
Sbjct: 1356 EEEEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEA 1415
>gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 35.0 bits (79), Expect = 0.12
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 175 EEEEEAAVAAAGAAGGKGAEE---------EQRDVEVVAAPVEAMAPPVEAGAAPMETQF 225
EEE+EAA AAA AA A + +VE VEA P VEA +E
Sbjct: 1358 EEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEAAE 1417
Query: 226 PHVEARAASMETTEKL 241
P+ EA E E +
Sbjct: 1418 PNGEAEGPDGEAAEPI 1433
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 171 EGAAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAMAPPVEAGAAPMETQFPHVEA 230
E E+E AA AAA Q + + VEA P VEA +E P VEA
Sbjct: 1356 EEEEEDEAAAAAAAAAQEVEANVHVPQVVLRIQGLNVEAAEPEVEAAEPEVEAAEPEVEA 1415
>gi|21361891 SH2 domain containing 4A [Homo sapiens]
Length = 454
Score = 34.7 bits (78), Expect = 0.16
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 85 LQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQETERKEAASRLRMAQTSLVEVQKERD 144
L+ ++R L ++ + Q LA + +++ ++KE+ + + + + ++++ER
Sbjct: 165 LEEEKIRSLSSSSR---NIQQMLADSINRMKAYAFHQKKESMKKKQDEEIN--QIEEERT 219
Query: 145 KELVSPHEWEQGAGWPGLATAGGVCTEG----AAEEEEEAAVAAAGAAGGKGAEEEQRDV 200
K++ W++ + W E A + E+ + GA G+G E Q +
Sbjct: 220 KQICK--SWKEDSEWQASLRKSKAADEKRRSLAKQAREDYKRLSLGAQKGRGGERLQSPL 277
Query: 201 EVVAAPVEAMAPP----VEAGAAPMETQFPHVEARAASMETTEKLER 243
V P PP + +GA P + R S E + R
Sbjct: 278 RVPQKPERPPLPPKPQFLNSGAYPQKPLRNQGVVRTLSSSAQEDIIR 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,841,309
Number of Sequences: 37866
Number of extensions: 903104
Number of successful extensions: 5189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 4670
Number of HSP's gapped (non-prelim): 678
length of query: 409
length of database: 18,247,518
effective HSP length: 105
effective length of query: 304
effective length of database: 14,271,588
effective search space: 4338562752
effective search space used: 4338562752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.