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Search of human proteins with 13569962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 404 e-113
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 375 e-104
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 222 2e-58
gi|16933567 mel transforming oncogene [Homo sapiens] 219 9e-58
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 217 5e-57
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 214 5e-56
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 214 5e-56
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 214 5e-56
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 212 2e-55
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 211 4e-55
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 187 5e-48
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 187 7e-48
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 185 2e-47
gi|50234889 RAB43 protein [Homo sapiens] 185 3e-47
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 184 4e-47
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 184 6e-47
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 184 6e-47
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 183 7e-47
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 183 7e-47
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 182 2e-46
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 181 4e-46
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 181 4e-46
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 181 4e-46
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 176 1e-44
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 170 9e-43
gi|19923483 GTPase Rab14 [Homo sapiens] 169 2e-42
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 167 7e-42
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 167 7e-42
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 164 4e-41
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 164 4e-41
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 404 bits (1039), Expect = e-113
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
Query: 181 GERPNLKIDSTPVKPAGGGCC 201
GERPNLKIDSTPVKPAGGGCC
Sbjct: 181 GERPNLKIDSTPVKPAGGGCC 201
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 375 bits (963), Expect = e-104
Identities = 188/202 (93%), Positives = 194/202 (96%), Gaps = 1/202 (0%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES+ NVKQWLQEIDRYASENVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK DLTTKKVVD TTAKEFADSLGIPFLETSAKNATNVEQ+FMTMAAEIKKRMGPGA +G
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 183
Query: 181 G-ERPNLKIDSTPVKPAGGGCC 201
G E+ N+KI STPVK +GGGCC
Sbjct: 184 GAEKSNVKIQSTPVKQSGGGCC 205
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 222 bits (565), Expect = 2e-58
Identities = 102/173 (58%), Positives = 139/173 (80%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YDYLFKLLLIGDSGVGK+CLL RF++D + ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFRTIT++YYRGA GI++VYD+T+++S+ N+K W++ I+ +AS +V ++++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILG 120
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173
NK D+ K+ V ++ A GI FLETSAK++ NVE+AF T+A +I ++
Sbjct: 121 NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 219 bits (559), Expect = 9e-58
Identities = 106/191 (55%), Positives = 143/191 (74%), Gaps = 3/191 (1%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YDYLFKLLLIGDSGVGK+C+L RF++D + ++ISTIG+DFKIRTIELDGK IKLQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFRTIT++YYRGA GI++VYD+T+++S+ N++ W++ I+ +AS +V K+++G
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG 120
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG---PGA 177
NK D+ K+ V ++ A GI F+ETSAK NVE AF T+A +IK +M G
Sbjct: 121 NKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGN 180
Query: 178 ASGGERPNLKI 188
+ G +KI
Sbjct: 181 SPQGSNQGVKI 191
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 217 bits (553), Expect = 5e-57
Identities = 100/184 (54%), Positives = 140/184 (76%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
+WDTAGQERF+TIT++YYRGA GII+VYD+TD++S+ N++ W++ I AS V +LL+G
Sbjct: 61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLG 120
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK D+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +
Sbjct: 121 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 180
Query: 181 GERP 184
G +P
Sbjct: 181 GNKP 184
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 214 bits (544), Expect = 5e-56
Identities = 99/184 (53%), Positives = 138/184 (75%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
+WDTAGQERF+TIT++YYRGA GII+ YD+TD++S+ N++ W++ I AS V LL+G
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK D+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 GERP 184
G +P
Sbjct: 305 GNKP 308
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 214 bits (544), Expect = 5e-56
Identities = 99/184 (53%), Positives = 138/184 (75%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
+WDTAGQERF+TIT++YYRGA GII+ YD+TD++S+ N++ W++ I AS V LL+G
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK D+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 GERP 184
G +P
Sbjct: 305 GNKP 308
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 214 bits (544), Expect = 5e-56
Identities = 99/184 (53%), Positives = 138/184 (75%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YD+LFKLLLIGDSGVGK+CL++RFA+D + +YISTIG+DFKIRT++++GK IKLQ
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQ 184
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
+WDTAGQERF+TIT++YYRGA GII+ YD+TD++S+ N++ W++ I AS V LL+G
Sbjct: 185 VWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLG 244
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK D+ K+ V A + A GI F ETSAK++ NV++AF ++A +I + G +
Sbjct: 245 NKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGN 304
Query: 181 GERP 184
G +P
Sbjct: 305 GNKP 308
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 212 bits (539), Expect = 2e-55
Identities = 104/162 (64%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M +YD+LFKLL+IGDSGVGKS LLLRFAD+T++ SYI+TIGVDFKIRT+E++G+ +KLQ
Sbjct: 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFRTITS+YYRG HG+IVVYDVT ES+ NVK+WL EI++ ++V ++LVG
Sbjct: 61 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG 119
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 162
NK+D +KVV+ A +FA +GI ETSAK NVE+ F
Sbjct: 120 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 211 bits (536), Expect = 4e-55
Identities = 98/168 (58%), Positives = 133/168 (79%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
YD LFKLLLIGDSGVGK+C+L RF+DD + ++ISTIG+DFKI+T+EL GK IKLQIWDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQERF TIT+SYYRGA GI++VYD+T+ +S+ N+ +WL+ ID +A+E+V ++L+GNK D
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 172
+ K+VV + A GI F ETSAK N+E+AF+T+A +I ++
Sbjct: 126 MDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 187 bits (475), Expect = 5e-48
Identities = 91/201 (45%), Positives = 132/201 (65%), Gaps = 5/201 (2%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
+DY+FKLLLIG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ K IKLQIWDT
Sbjct: 19 FDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDT 78
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQER+RTIT++YYRGA G +++YD+ +QES+A V+ W +I Y+ +N +LVGNK D
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG----PGAASG 180
L ++VV + AD LG F E SAK NV+Q F + I ++M P ++SG
Sbjct: 139 LEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSG 198
Query: 181 GERPNLKIDSTPV-KPAGGGC 200
+ P +P+ C
Sbjct: 199 SNGKGPAVGDAPAPQPSSCSC 219
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 187 bits (474), Expect = 7e-48
Identities = 93/166 (56%), Positives = 122/166 (73%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
Query: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169
DL + V A+ FA+ G+ F+ETSA ++TNVE AF T+ EI
Sbjct: 127 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 185 bits (470), Expect = 2e-47
Identities = 88/195 (45%), Positives = 130/195 (66%), Gaps = 7/195 (3%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
+DY+FK+L+IG+S VGK+ L R+ADD++T +++ST+G+DFK++TI + K IKLQIWDT
Sbjct: 19 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 78
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQER+RTIT++YYRGA G I++YD+T++ES+ V+ W +I Y+ +N LLVGNK D
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 138
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG-------PGA 177
+ ++VV + ++ AD LG F E SAK+ NV+Q F + I ++M P
Sbjct: 139 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAV 198
Query: 178 ASGGERPNLKIDSTP 192
+ P L P
Sbjct: 199 TGAKQGPQLSDQQVP 213
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 185 bits (469), Expect = 3e-47
Identities = 91/198 (45%), Positives = 138/198 (69%), Gaps = 2/198 (1%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
+YD+LFKL+L+GD+ VGK+C++ RF ++E STIGVDF ++T+E+ GK +KLQIWD
Sbjct: 14 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWD 73
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
TAGQERFRTIT SYYR A+G I+ YD+T + S+ +V W++++ +YA N+ +LL+GNKS
Sbjct: 74 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 133
Query: 124 DLTTKKVVDNTTAKEFADSLGI-PFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182
DL+ + V A+ A+ I +ETSAK+++NVE+AF+ +A E+ R G S
Sbjct: 134 DLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKS 193
Query: 183 RPNLKIDSTPVKPAGGGC 200
+++++S + G GC
Sbjct: 194 PDHIQLNSKDI-GEGWGC 210
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 184 bits (467), Expect = 4e-47
Identities = 97/200 (48%), Positives = 131/200 (65%), Gaps = 4/200 (2%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
Query: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 127 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186
Query: 180 GGERPNLKIDSTPVKPAGGG 199
E P + V P G
Sbjct: 187 HDESPGNNVVDISVPPTTDG 206
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 184 bits (466), Expect = 6e-47
Identities = 87/201 (43%), Positives = 131/201 (65%), Gaps = 4/201 (1%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ + K IKLQIWDT
Sbjct: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQER+RTIT++YYRGA G I++YD+T++ES+ V+ W +I Y+ +N +LVGNK D
Sbjct: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG----AASG 180
+ ++V+ + + LG F ETSAK+ NV+Q F + I +M A
Sbjct: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAIT 206
Query: 181 GERPNLKIDSTPVKPAGGGCC 201
+ N ++ TP P C
Sbjct: 207 AAKQNTRLKETPPPPQPNCAC 227
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 184 bits (466), Expect = 6e-47
Identities = 87/199 (43%), Positives = 133/199 (66%), Gaps = 6/199 (3%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWD 63
YD FK++L+GDSGVGK+CLL+RF D + ++IST+G+DF+ + +++DG +KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
TAGQERFR++T +YYR AH ++++YDVT++ S+ N++ WL EI YA +V +L+GNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179
Query: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER 183
D ++VV ++ A G+PF+ETSAK NV+ AF +A E+K+R +
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR----SMKAPSE 235
Query: 184 PNLKI-DSTPVKPAGGGCC 201
P ++ D + G CC
Sbjct: 236 PRFRLHDYVKREGRGASCC 254
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 183 bits (465), Expect = 7e-47
Identities = 90/195 (46%), Positives = 129/195 (66%), Gaps = 1/195 (0%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
+DYLFK++LIGDS VGK+C++ F YTE+ +TIGVDF +R++++DGK +K+Q+WDT
Sbjct: 14 FDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDT 73
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQERFRTIT SYYR AH I+ YD+T + ++ ++ W+ EI++Y + NV +L+GNK D
Sbjct: 74 AGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCD 133
Query: 125 LTTKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER 183
L K+ V A A+ G + LETSAK + N+E+ F+ MA E+ R
Sbjct: 134 LWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESAL 193
Query: 184 PNLKIDSTPVKPAGG 198
L +DS+PV A G
Sbjct: 194 NGLPLDSSPVLMAQG 208
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 183 bits (465), Expect = 7e-47
Identities = 95/210 (45%), Positives = 136/210 (64%), Gaps = 13/210 (6%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R I +DGK IKLQIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQE FR+IT SYYRGA G ++VYD+T ++++ ++ WL++ ++++ N+ +L+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAAS-GGER 183
L +++ V + FA G+ F+ETSAK A+NVE+AF+ A EI +++ G E
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA 182
Query: 184 PNLKIDSTPV------------KPAGGGCC 201
+KI + AGGGCC
Sbjct: 183 NGIKIGPQHAATNATHAGNQGGQQAGGGCC 212
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 182 bits (462), Expect = 2e-46
Identities = 85/202 (42%), Positives = 137/202 (67%), Gaps = 6/202 (2%)
Query: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQ 60
+P YD K++L+GD+GVGK+C L++F D + ++I+T+G+DF+ + + +DG +KLQ
Sbjct: 23 SPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQ 82
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFR++T +YYR A ++++YD+T++ S+ N++ WL EI YA +V +L+G
Sbjct: 83 IWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLG 142
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG 180
NK+D+++++V+ + + A G+PFLETSAK NVE AF+ +A E+K R G A
Sbjct: 143 NKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQA--- 199
Query: 181 GERPNLKI-DSTPVKPAGGGCC 201
+ P+ +I D + CC
Sbjct: 200 -DEPSFQIRDYVESQKKRSSCC 220
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 181 bits (459), Expect = 4e-46
Identities = 87/172 (50%), Positives = 124/172 (72%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Y YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DGK IKLQIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ +++S N+ +L+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG 176
L +++ V + FA G+ F+ETSAK A NVE+AF+ A EI +++ G
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 174
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 181 bits (459), Expect = 4e-46
Identities = 86/192 (44%), Positives = 127/192 (66%), Gaps = 4/192 (2%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
+DY+FKLL+IG+S VGK+ L R+ADDT+T +++ST+G+DFK++T+ K +KLQIWDT
Sbjct: 19 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 78
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQER+RTIT++YYRGA G I++YD+T++ES+ V+ W +I Y+ +N +LVGNK D
Sbjct: 79 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 138
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASG---- 180
+ ++VV + A+ LG F E SAK +V QAF + I +M +
Sbjct: 139 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSML 198
Query: 181 GERPNLKIDSTP 192
G N ++ TP
Sbjct: 199 GSSKNTRLSDTP 210
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 181 bits (459), Expect = 4e-46
Identities = 83/166 (50%), Positives = 125/166 (75%)
Query: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
+YD+LFK++LIG++GVGK+CL+ RF + +TIGVDF I+T+E++G+ +KLQIWD
Sbjct: 5 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 64
Query: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
TAGQERFR+IT SYYR A+ +I+ YD+T +ES+ + +WL+EI++YAS V +LVGNK
Sbjct: 65 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 124
Query: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169
DL ++ V A+EF+++ + +LETSAK + NVE+ F+ +A +
Sbjct: 125 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 176 bits (446), Expect = 1e-44
Identities = 84/169 (49%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
D+ ++++IG GVGK+ L+ RF DDT+ E+ ST+GVDFKI+T+EL GK I+LQIWDTA
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
Query: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 125
GQERF +ITS+YYR A GII+VYD+T +E++ ++ +W++ ID+YASE+ LLVGNK D
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
Query: 126 TTKKVVDNTTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIKKRM 173
T + + ++FA + G+ F E SAK+ NV++ F+ + +I K+M
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 170 bits (430), Expect = 9e-43
Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 6/196 (3%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +T+ LD T+K +IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
R+ ++ YYRGA IVVYD+T++ES+A K W++E+ R AS N+ L GNK+DL K
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR--MGPGAASGGERPNL 186
+ VD A+ +AD + F+ETSAK + NV + FM +A ++ K PGA S R
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGR--- 197
Query: 187 KIDST-PVKPAGGGCC 201
+D T P +P CC
Sbjct: 198 GVDLTEPTQPTRNQCC 213
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 169 bits (427), Expect = 2e-42
Identities = 89/199 (44%), Positives = 121/199 (60%), Gaps = 11/199 (5%)
Query: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Y Y+FK ++IGD GVGKSCLL +F + + TIGV+F R IE+ G+ IKLQIWDT
Sbjct: 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67
Query: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
AGQERFR +T SYYRGA G ++VYD+T + +Y ++ WL + + N +L+GNK+D
Sbjct: 68 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 127
Query: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG-----AAS 179
L ++ V AK+FA+ G+ FLE SAK NVE AF+ A +I + + G AA
Sbjct: 128 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAE 187
Query: 180 GGERPNLKIDSTPVKPAGG 198
G + P P GG
Sbjct: 188 SG------VQHKPSAPQGG 200
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 167 bits (422), Expect = 7e-42
Identities = 82/196 (41%), Positives = 129/196 (65%), Gaps = 6/196 (3%)
Query: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
L K +L+GDSGVGK+ LL++F + S+ +T+G+ F + + +DG +KLQIWDTAG
Sbjct: 22 LHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQIWDTAG 81
Query: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126
QERFR++T +YYR A ++++YD+T++ S+ N++ WL EI YA +V +L+GNK+D++
Sbjct: 82 QERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMS 141
Query: 127 TKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNL 186
+++V+ + + A G+PFLETSAK NVE AF+ +A E+K R G A + P+
Sbjct: 142 SERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQA----DEPSF 197
Query: 187 KI-DSTPVKPAGGGCC 201
+I D + CC
Sbjct: 198 QIRDYVESQKKRSSCC 213
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 167 bits (422), Expect = 7e-42
Identities = 83/176 (47%), Positives = 114/176 (64%)
Query: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
M YD+LFK L+IG +G GKSCLL +F ++ + + TIGV+F R + + GKT+KLQ
Sbjct: 1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60
Query: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
IWDTAGQERFR++T SYYRGA G ++VYD+T +E+Y ++ WL + AS N+ +L G
Sbjct: 61 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120
Query: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG 176
NK DL ++ V A FA + FLETSA NVE+AF+ A I ++ G
Sbjct: 121 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSG 176
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 164 bits (416), Expect = 4e-41
Identities = 85/193 (44%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +T+ LD T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
R+ ++ YYRGA IVVYD+T+ +++A K W++E+ R AS N+ L GNK+DL +K
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188
+ V+ A+ +AD + F+ETSAK A NV + FM +A ++ K P A+G N +
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKN-EPQNATGAPGRNRGV 200
Query: 189 DSTPVKPAGGGCC 201
D PA C
Sbjct: 201 DLQENNPASRSQC 213
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 164 bits (416), Expect = 4e-41
Identities = 85/193 (44%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
FKL+L+G+S VGKS L+LRF + E STIG F +T+ LD T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 69 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
R+ ++ YYRGA IVVYD+T+ +++A K W++E+ R AS N+ L GNK+DL +K
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188
+ V+ A+ +AD + F+ETSAK A NV + FM +A ++ K P A+G N +
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKN-EPQNATGAPGRNRGV 200
Query: 189 DSTPVKPAGGGCC 201
D PA C
Sbjct: 201 DLQENNPASRSQC 213
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,005,909
Number of Sequences: 37866
Number of extensions: 264661
Number of successful extensions: 1283
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 293
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.