Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 6912694
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens] 631 0.0
gi|239755070 PREDICTED: similar to proprotein convertase subtili... 35 0.060
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 35 0.060
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 35 0.060
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 35 0.060
gi|239755573 PREDICTED: similar to ectonucleotide pyrophosphatas... 35 0.10
gi|11140823 X-linked ectodysplasin receptor [Homo sapiens] 34 0.17
gi|238859557 regulatory factor X1 [Homo sapiens] 33 0.30
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 33 0.30
gi|108773804 Fraser syndrome 1 [Homo sapiens] 33 0.30
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 32 0.51
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo... 32 0.51
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|5174711 T-box 1 isoform B [Homo sapiens] 32 0.66
gi|18104952 T-box 1 isoform C [Homo sapiens] 32 0.66
gi|18104950 T-box 1 isoform A [Homo sapiens] 32 0.66
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] 32 0.66
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] 32 0.66
gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo ... 32 0.87
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 31 1.1
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 31 1.1
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 31 1.1
gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens] 31 1.5
gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens] 31 1.5
gi|239744589 PREDICTED: mucin 19 [Homo sapiens] 31 1.5
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 31 1.5
gi|42794273 F-box and leucine-rich repeat protein 22 [Homo sapiens] 31 1.5
gi|169212026 PREDICTED: keratin associated protein [Homo sapiens] 30 1.9
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 30 1.9
gi|157427665 hypothetical protein LOC205147 [Homo sapiens] 30 1.9
>gi|6912694 tumor necrosis factor receptor 13B [Homo sapiens]
Length = 293
Score = 631 bits (1627), Expect = 0.0
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MSGLGRSRRGGRSRVDQEERFPQGLWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQR 60
MSGLGRSRRGGRSRVDQEERFPQGLWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQR
Sbjct: 1 MSGLGRSRRGGRSRVDQEERFPQGLWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQR 60
Query: 61 TCAAFCRSLSCRKEQGKFYDHLLRDCISCASICGQHPKQCAYFCENKLRSPVNLPPELRR 120
TCAAFCRSLSCRKEQGKFYDHLLRDCISCASICGQHPKQCAYFCENKLRSPVNLPPELRR
Sbjct: 61 TCAAFCRSLSCRKEQGKFYDHLLRDCISCASICGQHPKQCAYFCENKLRSPVNLPPELRR 120
Query: 121 QRSGEVENNSDNSGRYQGLEHRGSEASPALPGLKLSADQVALVYSTLGLCLCAVLCCFLV 180
QRSGEVENNSDNSGRYQGLEHRGSEASPALPGLKLSADQVALVYSTLGLCLCAVLCCFLV
Sbjct: 121 QRSGEVENNSDNSGRYQGLEHRGSEASPALPGLKLSADQVALVYSTLGLCLCAVLCCFLV 180
Query: 181 AVACFLKKRGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAP 240
AVACFLKKRGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAP
Sbjct: 181 AVACFLKKRGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAP 240
Query: 241 TQESAVTPGTPDPTCAGRWGCHTRTTVLQPCPHIPDSGLGIVCVPAQEGGPGA 293
TQESAVTPGTPDPTCAGRWGCHTRTTVLQPCPHIPDSGLGIVCVPAQEGGPGA
Sbjct: 241 TQESAVTPGTPDPTCAGRWGCHTRTTVLQPCPHIPDSGLGIVCVPAQEGGPGA 293
>gi|239755070 PREDICTED: similar to proprotein convertase
subtilisin/kexin type 5 [Homo sapiens]
Length = 853
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 28 GVAMRSCPEEQYWDPLLGTCMSCKTIC------NHQSQRTC-------AAFCRSLSCRKE 74
G +R C Y D +G C SC C H +C C + +E
Sbjct: 102 GSCVRKCGPGFYGDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQE 161
Query: 75 QGKFYDHLLRDCISCASIC 93
+GKF++ +LR C S C
Sbjct: 162 EGKFWNDILRKLQPCHSSC 180
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 29 VAMRSCPEEQYWDPLLGTCMSCKTICNH------QSQRTCA--AFCRSLSCRKE--QGKF 78
+A C +YWD C C C H +TC + + +C K+ +G +
Sbjct: 443 MANEKCSPSEYWDEDAPGCKPCHVKCFHCMGPAEDQCQTCPMNSLLLNTTCVKDCPEGYY 502
Query: 79 YDHLLRDCISCASIC----GQHPKQC 100
D C C S C G+H +QC
Sbjct: 503 ADEDSNRCAHCHSSCRTCEGRHSRQC 528
Score = 28.9 bits (63), Expect = 5.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 25 LWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQRTCAAFCRSLSCRK 73
L+ G+ + CP Y++ C C H+S TC++ +C+K
Sbjct: 389 LYDGLCLEECPAGTYYEKQTKECRDC-----HKSCLTCSSSGTCTTCQK 432
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 28 GVAMRSCPEEQYWDPLLGTCMSCKTIC------NHQSQRTC-------AAFCRSLSCRKE 74
G +R C Y D +G C SC C H +C C + +E
Sbjct: 102 GSCVRKCGPGFYGDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQE 161
Query: 75 QGKFYDHLLRDCISCASIC 93
+GKF++ +LR C S C
Sbjct: 162 EGKFWNDILRKLQPCHSSC 180
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 29 VAMRSCPEEQYWDPLLGTCMSCKTICNH------QSQRTCA--AFCRSLSCRKE--QGKF 78
+A C +YWD C C C H +TC + + +C K+ +G +
Sbjct: 443 MANEKCSPSEYWDEDAPGCKPCHVKCFHCMGPAEDQCQTCPMNSLLLNTTCVKDCPEGYY 502
Query: 79 YDHLLRDCISCASIC----GQHPKQC 100
D C C S C G+H +QC
Sbjct: 503 ADEDSNRCAHCHSSCRTCEGRHSRQC 528
Score = 28.5 bits (62), Expect = 7.3
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 25 LWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQRTCAAFCRSLSCRK 73
L+ G+ + CP Y++ C C H+S TC++ +C+K
Sbjct: 389 LYDGLCLEECPAGTYYEKETKECRDC-----HKSCLTCSSSGTCTTCQK 432
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 28 GVAMRSCPEEQYWDPLLGTCMSCKTIC------NHQSQRTC-------AAFCRSLSCRKE 74
G +R C Y D +G C SC C H +C C + +E
Sbjct: 102 GSCVRKCGPGFYGDQEMGECESCHRACETCTGPGHDECSSCQEGLQLLRGMCVHATKTQE 161
Query: 75 QGKFYDHLLRDCISCASIC 93
+GKF++ +LR C S C
Sbjct: 162 EGKFWNDILRKLQPCHSSC 180
Score = 34.3 bits (77), Expect = 0.13
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 29 VAMRSCPEEQYWDPLLGTCMSCKTICNH------QSQRTCA--AFCRSLSCRKE--QGKF 78
+A C +YWD C C C H +TC + + +C K+ +G +
Sbjct: 443 MANEKCSPSEYWDEDAPGCKPCHVKCFHCMGPAEDQCQTCPMNSLLLNTTCVKDCPEGYY 502
Query: 79 YDHLLRDCISCASIC----GQHPKQC 100
D C C S C G+H +QC
Sbjct: 503 ADEDSNRCAHCHSSCRTCEGRHSRQC 528
Score = 28.5 bits (62), Expect = 7.3
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 25 LWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQRTCAAFCRSLSCRK 73
L+ G+ + CP Y++ C C H+S TC++ +C+K
Sbjct: 389 LYDGLCLEECPAGTYYEKETKECRDC-----HKSCLTCSSSGTCTTCQK 432
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 35.4 bits (80), Expect = 0.060
Identities = 41/139 (29%), Positives = 49/139 (35%), Gaps = 30/139 (21%)
Query: 164 YSTLGLC--LCAVLCCFLVAVA-----CFLKKRGDPCS--CQPRSRPRQ--SPAKSSQDH 212
Y + G C LCA C VA C RGD CS C P Q P +
Sbjct: 95 YESRGFCVPLCAQECVHGRCVAPNQCQCVPGWRGDDCSSECAPGMWGPQCDKPCSCGNNS 154
Query: 213 AMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTPGTPDPTCAGRWGCHTRTTVLQPCP 272
+ + S V + P ++ P C P TPG P C R CH PC
Sbjct: 155 SCDPKSGVCSCPSGLQP-----PNCLQPC-----TPGYYGPACQFRCQCHG-----APC- 198
Query: 273 HIPDSGLGIVCVPAQEGGP 291
D G PA+ GP
Sbjct: 199 ---DPQTGACFCPAERTGP 214
>gi|239755573 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 (putative function)
[Homo sapiens]
Length = 661
Score = 34.7 bits (78), Expect = 0.10
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 15/72 (20%)
Query: 196 QPRSRPRQSPAKSSQDHAMEAGSP------------VSTSPEPV--ETCSFCFPECRAPT 241
QP S P++ A SS+ A E G+P V P+P T + P RAP
Sbjct: 535 QPASEPQEHDANSSKQIAREVGNPSTCWRRNCESAYVGPRPDPTIPGTLALTGPASRAPN 594
Query: 242 QESAVTPGTPDP 253
+SA P PDP
Sbjct: 595 PDSA-PPKAPDP 605
>gi|11140823 X-linked ectodysplasin receptor [Homo sapiens]
Length = 297
Score = 33.9 bits (76), Expect = 0.17
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 34 CPEEQYWDPLLGTCMSCKTICNHQS-QRTCA------AFCRSLSCRKEQGKFYDHLLRDC 86
C E +YWD G C++C+ Q + C A+C + R+ + + H + C
Sbjct: 3 CQENEYWDQW-GRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSC 61
Query: 87 ISCASI 92
I+CA I
Sbjct: 62 ITCAVI 67
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 33.1 bits (74), Expect = 0.30
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 196 QPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAV---TPGTPD 252
Q S P QSP +++ + AG+P T P+ ++ + TQE +V TP P
Sbjct: 201 QVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHG--VQQSVPVTQERSVVQATPQAPK 258
Query: 253 P------TCAGRWGCHTRTTVLQ----PCPHIPDSGLGIVCVPAQEGG 290
P T G H V Q P PH+ S + V EGG
Sbjct: 259 PGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYV-----EGG 301
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 33.1 bits (74), Expect = 0.30
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 183 ACFLKKRGDP-CSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPT 241
+CFL R P C CQPR + +H G+ + SP + P CR PT
Sbjct: 4209 SCFLNARRQPKCRCQPRYTGDKCELDQCWEHCRNGGT-CAASPSGM-------PTCRCPT 4260
Query: 242 QESAVTPGTPDPTCAGRWGCHTRTTVLQ 269
P CAG ++ TV Q
Sbjct: 4261 --GFTGPKCTQQVCAGYCANNSTCTVNQ 4286
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 33.1 bits (74), Expect = 0.30
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 25 LWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQRTCAAFCRSLS--CRKEQGKFY--- 79
L G SC EEQ+ + L+G C C +C H CAA + C + Q Y
Sbjct: 785 LTNGNCRTSCREEQFLN-LVGYCADCHHLCQH-----CAADLHNTGSICLRCQNAHYLLL 838
Query: 80 -DHLLRDCIS-----------CASIC----GQHPKQCAYFCENKL 108
DH + DC S C S C G+ P C+ C+ L
Sbjct: 839 GDHCVPDCPSGYYAERGACKKCHSSCRTCQGRGPFSCS-SCDTNL 882
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapiens]
Length = 1085
Score = 32.3 bits (72), Expect = 0.51
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 198 RSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCF-----------PECRAPTQESAV 246
R RQS AK + D ++ V SP P + P+ R T S+
Sbjct: 974 RELERQSTAKHAPDVVLDTLEQVKNSPTPATSTESLSPLHNVALRSSEPQIRRSTSSSSD 1033
Query: 247 TPGTPDPTCAGRWGCHTRTTVLQPCPHI-PDSGLGIVCVPAQEG 289
T T P A R G + L+P P + P + I P +G
Sbjct: 1034 TMSTFKPMVAPRMGVQLKPPALRPKPAVLPKTNPTIGPAPPPQG 1077
>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
sapiens]
Length = 1905
Score = 32.3 bits (72), Expect = 0.51
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 20/150 (13%)
Query: 22 PQGLWTGVAMRSCPEEQYWDPLLGTCMSCKTI--CNHQSQRTCA-----AFCRSLSCRKE 74
P+G T ++ P + W L C S + C Q +R+ A L CRK
Sbjct: 1626 PEGTTTEISYEITPRIRVWRQTLERCRSAAQVCLCLGQLERSIAWEKSVNKVTCLVCRKG 1685
Query: 75 QGKFYDHLLRDCISCASICGQHPKQCA-----YFC--------ENKLRSPVNLPPELRRQ 121
+ L C I PK A +FC E + P +++
Sbjct: 1686 DNDEFLLLCDGCDRGCHIYCHRPKMEAVPEGDWFCTVCLAQQVEGEFTQKPGFPKRGQKR 1745
Query: 122 RSGEVENNSDNSGRYQGLEHRGSEASPALP 151
+SG N S+ GR + + RG E+ A P
Sbjct: 1746 KSGYSLNFSEGDGRRRRVLLRGRESPAAGP 1775
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 32.0 bits (71), Expect = 0.66
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 187 KKRGDPCSCQPRSRPRQSPA-----KSSQDHAMEAGSPVSTSPEPVETCSFCFPEC 237
+ RG+P +PR+ PR PA ++ AGSP + EP S P+C
Sbjct: 302 RSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAARPQC 357
>gi|5174711 T-box 1 isoform B [Homo sapiens]
Length = 372
Score = 32.0 bits (71), Expect = 0.66
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 189 RGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTP 248
R DPC+ P P + A AG+ S + EP + C +AP +++A
Sbjct: 49 RYDPCAAAAPGAPGPPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAKVA 108
Query: 249 G 249
G
Sbjct: 109 G 109
>gi|18104952 T-box 1 isoform C [Homo sapiens]
Length = 495
Score = 32.0 bits (71), Expect = 0.66
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 189 RGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTP 248
R DPC+ P P + A AG+ S + EP + C +AP +++A
Sbjct: 49 RYDPCAAAAPGAPGPPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAKVA 108
Query: 249 G 249
G
Sbjct: 109 G 109
>gi|18104950 T-box 1 isoform A [Homo sapiens]
Length = 398
Score = 32.0 bits (71), Expect = 0.66
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 189 RGDPCSCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTP 248
R DPC+ P P + A AG+ S + EP + C +AP +++A
Sbjct: 49 RYDPCAAAAPGAPGPPPPPHAYPFAPAAGAATSAAAEPEGPGASCAAAAKAPVKKNAKVA 108
Query: 249 G 249
G
Sbjct: 109 G 109
>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 32.0 bits (71), Expect = 0.66
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 21/89 (23%)
Query: 118 LRRQRSGEVEN--NSDNSGRYQGLEHRGSEASPALPGLKLSADQVALVYSTLGLCLCAVL 175
L R +VE+ +SD+ + G GS SP LP + LGL + ++L
Sbjct: 61 LGEPRPPDVEDMSSSDSDSDWDG----GSRLSPFLP------------HDHLGLAVFSML 104
Query: 176 CCFL---VAVACFLKKRGDPCSCQPRSRP 201
CCF +A C +K C P P
Sbjct: 105 CCFWPVGIAAFCLAQKTRPSCPYSPHCEP 133
>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 32.0 bits (71), Expect = 0.66
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 21/89 (23%)
Query: 118 LRRQRSGEVEN--NSDNSGRYQGLEHRGSEASPALPGLKLSADQVALVYSTLGLCLCAVL 175
L R +VE+ +SD+ + G GS SP LP + LGL + ++L
Sbjct: 61 LGEPRPPDVEDMSSSDSDSDWDG----GSRLSPFLP------------HDHLGLAVFSML 104
Query: 176 CCFL---VAVACFLKKRGDPCSCQPRSRP 201
CCF +A C +K C P P
Sbjct: 105 CCFWPVGIAAFCLAQKTRPSCPYSPHCEP 133
>gi|239741063 PREDICTED: hypothetical protein XP_002342081 [Homo
sapiens]
Length = 170
Score = 31.6 bits (70), Expect = 0.87
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 192 PCSCQPRSRPRQSPAKSSQDHAMEAG-----SPVSTSPEPVETCSFCFPECRAPTQESAV 246
P P RPR+ A + Q+ + +PV+ SP P F R P +
Sbjct: 39 PLRPHPAPRPREMAAAAPQNGSRSVAEKHLLNPVTPSPCPAPLAPTSFSPPRRPGLPTPP 98
Query: 247 TPGTPDPTCAGRWGCHTRTTVLQPCPHIPDSGLGIVCVPAQEGGPGA 293
PG + G R PH P SG G+ A G GA
Sbjct: 99 RPGATGSGARQQRGAFVRAHATFTQPHGPLSG-GLFLKGATAGRNGA 144
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 31.2 bits (69), Expect = 1.1
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 29/142 (20%)
Query: 172 CAVLCCFLVAV---ACFLKKRGDPCSCQPR-SRPRQSPAKSSQDHAMEAGSP-----VST 222
C CF V +C + P C+P P S + Q EA S V T
Sbjct: 128 CCQPVCFEATVCEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPT 187
Query: 223 SPEPV---ETC--------SFCFPECRAPT-------QESAVTPGTPDPTCAGRWGCHTR 264
S +PV +C S C C P+ + S P P PTC+ C +
Sbjct: 188 SCQPVLCKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCCQPVCPTPTCSVTSSC--Q 245
Query: 265 TTVLQPCPHIPDSGLGIVCVPA 286
P P P +C PA
Sbjct: 246 AVCCDPSPCEPSCSESSICQPA 267
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 31.2 bits (69), Expect = 1.1
Identities = 37/142 (26%), Positives = 48/142 (33%), Gaps = 29/142 (20%)
Query: 172 CAVLCCFLVAV---ACFLKKRGDPCSCQPR-SRPRQSPAKSSQDHAMEAGSP-----VST 222
C CF V +C + P C+P P S + Q EA S V T
Sbjct: 128 CCQPVCFEATVCEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPT 187
Query: 223 SPEPV---ETC--------SFCFPECRAPT-------QESAVTPGTPDPTCAGRWGCHTR 264
S +PV +C S C C P+ + S P P PTC+ C +
Sbjct: 188 SCQPVLCKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCCQPVCPTPTCSVTSSC--Q 245
Query: 265 TTVLQPCPHIPDSGLGIVCVPA 286
P P P +C PA
Sbjct: 246 AVCCDPSPCEPSCSESSICQPA 267
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 41 DPLLGTCMSCKTICNHQSQRTCAAFCRSLSCRKEQGKFYDHLLRDCI-SCASICGQHPKQ 99
+P +G C C QRTC C C+K+ G+ + C+ C QH
Sbjct: 1477 EPCIGECPPC--------QRTCQNRCVHSQCKKKCGELCSPCVEPCVWRC-----QH--- 1520
Query: 100 CAYFCENKLRSPVNLPP 116
Y C P N PP
Sbjct: 1521 --YQCTKLCSEPCNRPP 1535
>gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 1.5
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 35/128 (27%)
Query: 18 EERFPQGLWTGVAMR-SCPEEQYWD------PLLGTCMSCKTICNHQSQRTCA--AFCRS 68
EE+ P +WT R +C + + D P TC + + + QS TC +C
Sbjct: 381 EEKSPGDIWTANCHRGTCTDAKTIDCKPEECPSPPTCKTGEKLVKFQSNDTCCEIGYCEP 440
Query: 69 LSCR-----KEQGKFYDHLLRDCISC-------ASICGQHPKQ--------------CAY 102
+C E G +D C+S A++ PKQ C Y
Sbjct: 441 RTCLFNNTDYEIGASFDDPSNPCVSYSCKDTGFAAVVQDCPKQTWCAEANRIYDSKKCCY 500
Query: 103 FCENKLRS 110
C+N RS
Sbjct: 501 TCKNNCRS 508
>gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 1.5
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 35/128 (27%)
Query: 18 EERFPQGLWTGVAMR-SCPEEQYWD------PLLGTCMSCKTICNHQSQRTCA--AFCRS 68
EE+ P +WT R +C + + D P TC + + + QS TC +C
Sbjct: 381 EEKSPGDIWTANCHRGTCTDAKTIDCKPEECPSPPTCKTGEKLVKFQSNDTCCEIGYCEP 440
Query: 69 LSCR-----KEQGKFYDHLLRDCISC-------ASICGQHPKQ--------------CAY 102
+C E G +D C+S A++ PKQ C Y
Sbjct: 441 RTCLFNNTDYEIGASFDDPSNPCVSYSCKDTGFAAVVQDCPKQTWCAEANRIYDSKKCCY 500
Query: 103 FCENKLRS 110
C+N RS
Sbjct: 501 TCKNNCRS 508
>gi|239744589 PREDICTED: mucin 19 [Homo sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 1.5
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 35/128 (27%)
Query: 18 EERFPQGLWTGVAMR-SCPEEQYWD------PLLGTCMSCKTICNHQSQRTCA--AFCRS 68
EE+ P +WT R +C + + D P TC + + + QS TC +C
Sbjct: 381 EEKSPGDIWTANCHRGTCTDAKTIDCKPEECPSPPTCKTGEKLVKFQSNDTCCEIGYCEP 440
Query: 69 LSCR-----KEQGKFYDHLLRDCISC-------ASICGQHPKQ--------------CAY 102
+C E G +D C+S A++ PKQ C Y
Sbjct: 441 RTCLFNNTDYEIGASFDDPSNPCVSYSCKDTGFAAVVQDCPKQTWCAEANRIYDSKKCCY 500
Query: 103 FCENKLRS 110
C+N RS
Sbjct: 501 TCKNNCRS 508
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 159 QVALVYSTLGLCLCAVLCCFLVAVACFLKKRGDPCSCQPRSRPRQSPAKSSQDHAMEAGS 218
+V L S L LC + V G P + P S P + P+KS G+
Sbjct: 774 KVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKP-NKSPHSSPTKLPSKSPTKVVPRPGA 832
Query: 219 PVST--SPEPVETCSFCFPECRAPT-QESAVTPGTPDPT 254
P+ T SP+P + + +C + T Q + + PG DP+
Sbjct: 833 PLVTKESPKPDKGKGPPWADCGSTTAQSTPLVPGPTDPS 871
>gi|42794273 F-box and leucine-rich repeat protein 22 [Homo sapiens]
Length = 241
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 25 LWTGVAMRSCPEEQYWDPLLGTCMSCKTICNHQSQ-RTC-------AAFCRSLSCRKEQG 76
LW+ + RS E Q + LLG + +IC H S+ + C +AF RS+ C + +
Sbjct: 42 LWSLLHFRSLTELQKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSI-CSRHES 100
Query: 77 KFYDHLLRDC 86
D LLR C
Sbjct: 101 LVNDFLLRVC 110
>gi|169212026 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 30.4 bits (67), Expect = 1.9
Identities = 36/142 (25%), Positives = 48/142 (33%), Gaps = 29/142 (20%)
Query: 172 CAVLCCFLVAV---ACFLKKRGDPCSCQPR-SRPRQSPAKSSQDHAMEAGSP-----VST 222
C CF + +C + P C+P P S + Q EA S V T
Sbjct: 128 CCQPVCFEATICEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPT 187
Query: 223 SPEPV---ETC--------SFCFPECRAPT-------QESAVTPGTPDPTCAGRWGCHTR 264
S +PV +C S C C P+ + S P P PTC+ C +
Sbjct: 188 SCQPVLCKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCCQPVCPTPTCSVTSSC--Q 245
Query: 265 TTVLQPCPHIPDSGLGIVCVPA 286
P P P +C PA
Sbjct: 246 AVCCDPSPCEPTCSESSICQPA 267
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 30.4 bits (67), Expect = 1.9
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 204 SPAKSSQDHAMEAGSPVSTSPEPVETCSF-----CFPECRAPT---QESAVTPGTP-DPT 254
+P H P+ P P CS C C P S P T DP
Sbjct: 190 TPGPCQSSHLPSTSMPLLKMPPPFSGCSHPCSGHCGGHCSGPLLPPPSSQPLPSTHRDPG 249
Query: 255 CAGRWGCHTRTTVLQPCPHIPDSGLG 280
C G H+ P P D GLG
Sbjct: 250 CKGHKFAHSGLACQLPQPCEADEGLG 275
>gi|157427665 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 30.4 bits (67), Expect = 1.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 201 PRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAP----TQESAVTPGTPDPT 254
P + P S+ +++ G+P S PE V T + + +P ++ A +PGTP T
Sbjct: 354 PCRDPRSGSKASSIDTGTPKSEQPESVSTSDEGYYDSFSPGLEEDKKEAESPGTPAAT 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,910,827
Number of Sequences: 37866
Number of extensions: 827729
Number of successful extensions: 3014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 2934
Number of HSP's gapped (non-prelim): 157
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.