Guide to the Human Genome
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Name: TSPAN2 Sequence: fasta or formatted (221aa) NCBI GI: 21264580
Description:

tetraspan 2

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         15           2
 C cysteine            5.0         11           2
 D aspartate           2.3          5           1
 E glutamate           5.4         12           2
 F phenylalanine       8.1         18           2
 G glycine            12.7         28           2
 H histidine           1.4          3           1
 I isoleucine          8.6         19           2
 K lysine              4.5         10           1
 L leucine            10.4         23           3
 M methionine          3.2          7           2
 N asparagine          2.3          5           1
 P proline             1.4          3           1
 Q glutamine           2.7          6           1
 R arginine            4.1          9           1
 S serine              5.4         12           2
 T threonine           4.5         10           2
 V valine              7.2         16           1
 W tryptophan          0.9          2           1
 Y tyrosine            3.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspan 2 
CD9                   0.432   CD9 antigen 
CD81                  0.364   CD81 antigen 
TSPAN8                0.211   transmembrane 4 superfamily member 3 
CD151                 0.192   CD151 antigen 
CD151                 0.192   CD151 antigen 
CD151                 0.192   CD151 antigen 
CD151                 0.192   CD151 antigen 
TSPAN18               0.167   tetraspanin 18 isoform 2 
TSPAN4                0.167   tetraspanin 4 isoform a 
TSPAN4                0.167   tetraspanin 4 isoform a 
TSPAN4                0.167   tetraspanin 4 isoform a 
TSPAN4                0.167   tetraspanin 4 isoform a 
TSPAN4                0.167   tetraspanin 4 isoform a 
TSPAN4                0.167   tetraspanin 4 isoform a 
CD82                  0.162   CD82 antigen isoform 1 
CD53                  0.162   CD53 antigen 
CD53                  0.162   CD53 antigen 
TSPAN11               0.157   tetraspanin 11 
TSPAN1                0.157   tetraspan 1 
TSPAN18               0.150   tetraspanin 18 isoform 1 
TSPAN9                0.143   tetraspanin 9 
TSPAN5                0.134   transmembrane 4 superfamily member 9 
TSPAN17               0.127   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.124   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.122   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN14               0.117   tetraspanin 14 isoform 1 
TSPAN33               0.113   tetraspanin 33 
TSPAN7                0.110   tetraspanin 7 
CD63                  0.110   CD63 antigen isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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