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Search of human proteins with 68989258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68989258 neurogenin 3 [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68989258 neurogenin 3 [Homo sapiens] 437 e-123
gi|38455396 neurogenin 1 [Homo sapiens] 143 1e-34
gi|31077092 neurogenin 2 [Homo sapiens] 127 5e-30
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 87 8e-18
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 86 2e-17
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 82 4e-16
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 80 1e-15
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 76 2e-14
gi|4885075 atonal homolog 1 [Homo sapiens] 74 7e-14
gi|21553337 atonal homolog 7 [Homo sapiens] 70 1e-12
gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens] 67 1e-11
gi|148922889 scleraxis homolog B [Homo sapiens] 64 1e-10
gi|186972126 scleraxis homolog A [Homo sapiens] 64 1e-10
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 64 1e-10
gi|57529222 basic helix-loop-helix domain containing, class B, 4... 61 6e-10
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 60 1e-09
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 60 2e-09
gi|116805332 musculin [Homo sapiens] 60 2e-09
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 60 2e-09
gi|17981708 twist homolog 2 [Homo sapiens] 58 7e-09
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 58 7e-09
gi|23097242 nephew of atonal 3 [Homo sapiens] 58 7e-09
gi|4507741 twist [Homo sapiens] 57 2e-08
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 57 2e-08
gi|38202237 transcription factor 21 [Homo sapiens] 56 2e-08
gi|38202239 transcription factor 21 [Homo sapiens] 56 2e-08
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 55 3e-08
gi|226498192 atonal homolog 8 [Homo sapiens] 55 6e-08
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 55 6e-08
gi|14149724 mesoderm posterior 1 [Homo sapiens] 55 6e-08
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 437 bits (1124), Expect = e-123
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MTPQPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRK 60
MTPQPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRK
Sbjct: 1 MTPQPSGAPTVQVTRETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRK 60
Query: 61 LRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLT 120
LRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLT
Sbjct: 61 LRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLT 120
Query: 121 KIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAG 180
KIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAG
Sbjct: 121 KIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAG 180
Query: 181 SLSPAASLEERPGLLGATFSACLSPGSLAFSDFL 214
SLSPAASLEERPGLLGATFSACLSPGSLAFSDFL
Sbjct: 181 SLSPAASLEERPGLLGATFSACLSPGSLAFSDFL 214
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 143 bits (361), Expect = 1e-34
Identities = 90/173 (52%), Positives = 103/173 (59%), Gaps = 14/173 (8%)
Query: 34 SAPPSPTRTRG--NCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDR 91
S PP+P R RG N + A E + R RR GR+R +SE L RRSRR KANDR
Sbjct: 42 SGPPAPAR-RGAPNISRASEVPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKANDR 100
Query: 92 ERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSL----- 146
ERNRMHNLN+ALDALR VLP+FPDD KLTKIETLRFA+NYIWAL +TLR+AD L
Sbjct: 101 ERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGLPGGGA 160
Query: 147 -YALEPP--APHCGELGSPGGSPGDWGS---LYSPVSQAGSLSPAASLEERPG 193
L PP P SP WGS SP+S S + + RPG
Sbjct: 161 RERLLPPQCVPCLPGPPSPASDAESWGSGAAAASPLSDPSSPAASEDFTYRPG 213
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 127 bits (320), Expect = 5e-30
Identities = 92/200 (46%), Positives = 109/200 (54%), Gaps = 46/200 (23%)
Query: 43 RGNCAEAEEGGCRGAP----------RKLRARRGGRSRPKSELALSKQRRSRRKKANDRE 92
RG A EG CR A R RAR R +E + + +++RR KAN+RE
Sbjct: 64 RGGVAAGAEG-CRPARLLGLVHDCKRRPSRARAVSRGAKTAE-TVQRIKKTRRLKANNRE 121
Query: 93 RNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSLYALEPP 152
RNRMHNLN+ALDALR VLPTFP+DAKLTKIETLRFAHNYIWALT+TLR+AD
Sbjct: 122 RNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLAD--------- 172
Query: 153 APHCGELG--------------SPGG------SPGDWGSLYSPVSQAGSLSPAASLEERP 192
HCG G SPGG S GD S S S S +P++S+
Sbjct: 173 --HCGGGGGGLPGALFSEAVLLSPGGASAALSSSGDSPSPASTWSCTNSPAPSSSVSSNS 230
Query: 193 GLLGATFSACLSPGSLAFSD 212
+ +S LSP S A SD
Sbjct: 231 ---TSPYSCTLSPASPAGSD 247
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 87.4 bits (215), Expect = 8e-18
Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 35 APPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERN 94
AP T + EE G PR RRG R + ++L L + + RR++AN RERN
Sbjct: 51 APGEETEKEEEEEDREEEDENGLPR----RRGLRKKKTTKLRLERVK-FRRQEANARERN 105
Query: 95 RMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRI 141
RMH LN ALD LR V+P + KL+KIETLR A NYIWAL++ LRI
Sbjct: 106 RMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRI 152
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 86.3 bits (212), Expect = 2e-17
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 48 EAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALR 107
E EE G A + +RG + R ++ L + + RR+KAN RERNRMH+LN+ALD LR
Sbjct: 87 EEEEEGLDEAEGERPKKRGPKKRKMTKARLERSKL-RRQKANARERNRMHDLNAALDNLR 145
Query: 108 GVLPTFPDDAKLTKIETLRFAHNYIWALTQTLR 140
V+P + KL+KIETLR A NYIWAL++ LR
Sbjct: 146 KVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 178
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 81.6 bits (200), Expect = 4e-16
Identities = 42/79 (53%), Positives = 54/79 (68%)
Query: 62 RARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK 121
+ +R G + K A ++ + RR KAN RERNRMH LN+ALD LR V+P + KL+K
Sbjct: 80 KPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSK 139
Query: 122 IETLRFAHNYIWALTQTLR 140
IETLR A NYIWAL++ LR
Sbjct: 140 IETLRLAKNYIWALSEILR 158
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 80.1 bits (196), Expect = 1e-15
Identities = 41/78 (52%), Positives = 52/78 (66%)
Query: 62 RARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTK 121
+ +R G + K A ++ R+RR KAN RER RMH LN ALD LR V+P + KL+K
Sbjct: 66 KPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSK 125
Query: 122 IETLRFAHNYIWALTQTL 139
IETLR A NYIWAL++ L
Sbjct: 126 IETLRLARNYIWALSEVL 143
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 76.3 bits (186), Expect = 2e-14
Identities = 57/133 (42%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 24 ASEDEVTCPTSAP-PSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRR 82
A+ E T S P P P +G + R AP + R RR G S P S QRR
Sbjct: 19 ATPGEGTPDGSLPNPGPEPAKGLRSRPARAAAR-APGEGRRRRPGPSGPGGRRDSSIQRR 77
Query: 83 SRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQT-LRI 141
++N+RER RMH LN+A ALR V+P D KL+KIETL A NYI +LT T L +
Sbjct: 78 L---ESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTM 134
Query: 142 ADHSLYALEPPAP 154
+ L LE P P
Sbjct: 135 SSSRLPGLEGPGP 147
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 74.3 bits (181), Expect = 7e-14
Identities = 63/196 (32%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 34 SAPPSPTRTRGNCAEAEEGGCRGA----PRKLRAR----RGG---------RSRPKSELA 76
+AP RG GG + P K+R + +GG R R S
Sbjct: 93 AAPRDEVDGRGELVRRSSGGASSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQ 152
Query: 77 LSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALT 136
++ ++ RR AN RER RMH LN A D LR V+P+F +D KL+K ETL+ A YI AL+
Sbjct: 153 VNGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALS 212
Query: 137 QTLRIADHSLYALEPPAP------HCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEE 190
+ L+ PPA H S G G+ + + + GS P
Sbjct: 213 ELLQTPSGGEQPPPPPASCKSDHHHLRTAASYEGGAGNATAAGAQQASGGSQRPTP---- 268
Query: 191 RPGLLGATFSACLSPG 206
PG FSA S G
Sbjct: 269 -PGSCRTRFSAPASAG 283
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 70.5 bits (171), Expect = 1e-12
Identities = 55/153 (35%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 30 TCPTSAPPSPTRTRGNCAEAEE--GGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKK 87
+C S PP+ R CA E G C GA R A R RR
Sbjct: 3 SCKPSGPPAGARVAPPCAGGTECAGTCAGAGRLESAAR------------------RRLA 44
Query: 88 ANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSLY 147
AN RER RM LN+A D LR V+P + D KL+K ETL+ A +YI ALT+ L A+
Sbjct: 45 ANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFGS 104
Query: 148 ALEPPAPHCGELGS------PGGSPGDWGSLYS 174
+ HC G PG LYS
Sbjct: 105 ERDWVGLHCEHFGRDHYLPFPGAKLPGESELYS 137
>gi|28411948 oligodendrocyte transcription factor 3 [Homo sapiens]
Length = 272
Score = 66.6 bits (161), Expect = 1e-11
Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 66 GGRSRPKSELALSKQRRSR-RKKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKI 122
G S+ K + LS+Q + R K N RER RMH+LN A+D LR V+P P KL+KI
Sbjct: 65 GESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKI 124
Query: 123 ETLRFAHNYIWALTQTLRIADH---SLYALEPPAPHCGELGSPGGSPGDWGSLYSPV 176
TL A NYI LT +L +Y A HCG +G G P + PV
Sbjct: 125 ATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPV 181
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 25 SEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR 84
SEDE S+ R + A G +GA R+ RR G P ++R
Sbjct: 23 SEDEDRGSDSSGSDEKPCRVHAARC---GLQGARRRAGGRRAGGGGPGGRPGREPRQRHT 79
Query: 85 RKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADH 144
AN RER+R +++N+A ALR ++PT P D KL+KIETLR A +YI L L +
Sbjct: 80 ---ANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE- 135
Query: 145 SLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSP 184
CG+ G P G + ++AGS P
Sbjct: 136 ----------ACGD-----GQPCHSGPAFFHAARAGSPPP 160
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 63.5 bits (153), Expect = 1e-10
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 25 SEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR 84
SEDE S+ R + A G +GA R+ RR G P ++R
Sbjct: 23 SEDEDRGSDSSGSDEKPCRVHAARC---GLQGARRRAGGRRAGGGGPGGRPGREPRQRHT 79
Query: 85 RKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADH 144
AN RER+R +++N+A ALR ++PT P D KL+KIETLR A +YI L L +
Sbjct: 80 ---ANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLLAGE- 135
Query: 145 SLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSP 184
CG+ G P G + ++AGS P
Sbjct: 136 ----------ACGD-----GQPCHSGPAFFHAARAGSPPP 160
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 63.5 bits (153), Expect = 1e-10
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 46 CAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDA 105
C E E RG P RR G + + +QR++ AN RER+R ++N+A A
Sbjct: 40 CCEGPEAARRG-PGPGGGRRAGGGGGAGPVVVVRQRQA----ANARERDRTQSVNTAFTA 94
Query: 106 LRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIAD 143
LR ++PT P D KL+KIETLR A +YI L L + D
Sbjct: 95 LRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGD 132
>gi|57529222 basic helix-loop-helix domain containing, class B, 4
[Homo sapiens]
Length = 225
Score = 61.2 bits (147), Expect = 6e-10
Identities = 46/113 (40%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 35 APPSPTRTRGNCAEAEEGGCRGAPRKLRARRG------GRSRPKSELALSKQRRSRRKKA 88
AP +P + + E + G A + R RRG GR RP+ ++RS R
Sbjct: 54 APRAPAQAAESSGE-QSGDEDDAFEQRRRRRGPGSAADGRRRPR-------EQRSLRLSI 105
Query: 89 NDRERNRMHNLNSALDALRGVLP--TFPDDAKLTKIETLRFAHNYIWALTQTL 139
N RER RMH+LN ALD LR V+P P KL+KI TL A NYI Q L
Sbjct: 106 NARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 158
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 60.5 bits (145), Expect = 1e-09
Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 25/174 (14%)
Query: 31 CPTSAPPS---------PTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQR 81
C T APP P+ CA A R L +R + + +
Sbjct: 102 CETGAPPGGFPYSPGSPPSCLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAEL 161
Query: 82 RSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRI 141
+ R+ AN RER RM ++N A + LR +PT P + +L+K++TLR A YI L++ ++
Sbjct: 162 QQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQ- 220
Query: 142 ADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQA--------GSLSPAAS 187
AD L A CG G G GD SP SQA G+ SP+ S
Sbjct: 221 ADLPLRG--GGAGGCGGPGGGGRLGGD-----SPGSQAQKVIICHRGTRSPSPS 267
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 59.7 bits (143), Expect = 2e-09
Identities = 51/144 (35%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 66 GGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLP--TFPDDAKLTKIE 123
G S S SK++++ R N RER RMH+LN ALD LR V+P P KL+KI
Sbjct: 225 GSSSSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIA 284
Query: 124 TLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLS 183
TL A NYI Q L + L G+ S P S + + A +L
Sbjct: 285 TLLLAKNYILMQAQALEEMRRLVAYLNQ-----GQAISAASLP----SSAAAAAAAAALH 335
Query: 184 PAASLEERPGLLGATFSACLSPGS 207
PA E+ G FSA L P +
Sbjct: 336 PALGAYEQAA--GYPFSAGLPPAA 357
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 59.7 bits (143), Expect = 2e-09
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 15 RETERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKL-----------RA 63
R ERS+ S++ ++ P CA G G RK A
Sbjct: 32 RGVERSYASPSDNS----SAEEEDPDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSA 87
Query: 64 RRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIE 123
GG+ ++ + ++ ++S+R AN RER RM L+ A L+ LP P D KL+K++
Sbjct: 88 GGGGKKPLPAKGSAAECKQSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLD 147
Query: 124 TLRFAHNYIWALTQTLR 140
TLR A +YI L Q L+
Sbjct: 148 TLRLASSYIAHLRQLLQ 164
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 59.7 bits (143), Expect = 2e-09
Identities = 65/195 (33%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 27 DEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRK 86
D T P SAPP+P G A +P LR R R RP + A + +
Sbjct: 2 DGGTLPRSAPPAPPVPVGCAARRRPA----SPELLRCSR--RRRPAT--AETGGGAAAVA 53
Query: 87 KANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIADHSL 146
+ N+RERNR+ +N ALR +P KL+K+ETLR A YI AL + L D
Sbjct: 54 RRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVR 113
Query: 147 YALEPP-APHCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEERPGLLGATFSA---- 201
AL P +P G PG SP S+A S SP PG + +S+
Sbjct: 114 NALAGGLRPQAVRPSAPRGPPGTTPVAASP-SRASS-SPGRGGSSEPGSPRSAYSSDDSG 171
Query: 202 ---CLSPGSLAFSDF 213
LSP DF
Sbjct: 172 CEGALSPAERELLDF 186
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 57.8 bits (138), Expect = 7e-09
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 33 TSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARR----------GGRSRPKSELALS-KQR 81
+S+P SP + G E E + RK R + G R + S A S ++
Sbjct: 5 SSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEEL 64
Query: 82 RSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLR 140
+S+R AN RER R +LN A ALR ++PT P D KL+KI+TL+ A YI L Q L+
Sbjct: 65 QSQRILANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQ 122
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 57.8 bits (138), Expect = 7e-09
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 33 TSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR-------R 85
+++P S + + G+C G RG P+ R+ +E A + RR+R R
Sbjct: 30 STSPASSSDSSGSCPC---DGARGLPQPQPPSCSSRA---AEAAATTPRRARTGPAGGQR 83
Query: 86 KKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKIETLRFAHNYIWALTQTLRIAD 143
+ A++RE+ RM L AL LR LP P LTKIETLR A YI L+ L +++
Sbjct: 84 QSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSE 143
Query: 144 HSLYALEPPAPHCGELGSPGGSP 166
SL G+ GSP G P
Sbjct: 144 ESLQCRRRQR---GDAGSPWGCP 163
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 57.8 bits (138), Expect = 7e-09
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 68 RSRPKSELALSKQRR----SRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIE 123
R R S L K++R ++R+ AN RER RM NLN A D LR +PTF + +L++IE
Sbjct: 82 RGRGVSLLGRPKRKRVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIE 141
Query: 124 TLRFAHNYIWALTQTL 139
TLR A YI +T+ L
Sbjct: 142 TLRLAIVYISFMTELL 157
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 56.6 bits (135), Expect = 2e-08
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 36 PPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNR 95
P SP + + A GG GA + GG S E + +++R AN RER R
Sbjct: 66 PGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYE-----ELQTQRVMANVRERQR 120
Query: 96 MHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLR 140
+LN A ALR ++PT P D KL+KI+TL+ A YI L Q L+
Sbjct: 121 TQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQ 164
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 56.6 bits (135), Expect = 2e-08
Identities = 59/202 (29%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 3 PQPSGAPTVQVTRETERS------FPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRG 56
P S + + T T S P+A+ ++ P PP P G
Sbjct: 41 PPSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPAE-PPGPGPGSG------------ 87
Query: 57 APRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTF--- 113
A GG +RP ++ +Q++ R+K N RER RM +LN A+DALR V+ +
Sbjct: 88 ------AHPGGSARPDAK---EEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAA 138
Query: 114 ----PDDAKLTKIETLRFAHNYIWALTQTLRIADHSL-YALEPPAPHCGELGSP--GGSP 166
KL+KI TL A NYI L +L+ +L P AP G P +P
Sbjct: 139 HCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAP 198
Query: 167 GDWGSLYSPVSQAGSLSPAASL 188
G V +L PA L
Sbjct: 199 GSVLLAPGAVGPPDALRPAKYL 220
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 56.2 bits (134), Expect = 2e-08
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 45 NCAEAEEGGCR-GAPRKLRARRGGRSRP---KSELALSKQ--RRSRRKKANDRERNRMHN 98
N + E C G+P+K R G R + KS L+ Q ++ +R AN RER RM
Sbjct: 35 NESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRV 94
Query: 99 LNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTL 139
L+ A L+ LP P D KL+K++TLR A +YI L Q L
Sbjct: 95 LSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 56.2 bits (134), Expect = 2e-08
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 45 NCAEAEEGGCR-GAPRKLRARRGGRSRP---KSELALSKQ--RRSRRKKANDRERNRMHN 98
N + E C G+P+K R G R + KS L+ Q ++ +R AN RER RM
Sbjct: 35 NESTEESSNCENGSPQKGRGGLGKRRKAPTKKSPLSGVSQEGKQVQRNAANARERARMRV 94
Query: 99 LNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTL 139
L+ A L+ LP P D KL+K++TLR A +YI L Q L
Sbjct: 95 LSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 55.5 bits (132), Expect = 3e-08
Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 80 QRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTL 139
Q+ +RR N RER R N+N A LR +LPT P D KL+K E LR A YI L + L
Sbjct: 147 QKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 206
Query: 140 RIADHSLYA-LEPPAP 154
R +L A PP P
Sbjct: 207 RDQAAALAAGPTPPGP 222
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 54.7 bits (130), Expect = 6e-08
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 4 QPSGAPTVQVTRETERSFPRASEDEVTCPTSA--PPSPTR----TRGNCAEAEEGGCRGA 57
+P P + + R P A P S P PTR + + + + +
Sbjct: 147 EPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPTRPGESSYSSISHVIYNNHQDS 206
Query: 58 PRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDA 117
R R G + SE+ +Q +RR AN RER R+H +++A +ALR +P +
Sbjct: 207 SASPRKRPGEATAASSEIKALQQ--TRRLLANARERTRVHTISAAFEALRKQVPCYSYGQ 264
Query: 118 KLTKIETLRFAHNYIWALTQTLRI---ADHSLYALEPPAPHC 156
KL+K+ LR A NYI +L + + ADHS + C
Sbjct: 265 KLSKLAILRIACNYILSLARLADLDYSADHSNLSFSECVQRC 306
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 54.7 bits (130), Expect = 6e-08
Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 85 RKKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKIETLRFAHNYIWALTQTL 139
R K N RER RMH+LN A+D LR V+P P KL+KI TL A NYI LT +L
Sbjct: 110 RLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 166
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 54.7 bits (130), Expect = 6e-08
Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 56 GAPRKLRARRGGRSRPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLP--TF 113
G R RA GR +S S QR+S A++RE+ RM L AL LR LP
Sbjct: 59 GTLRDPRAPSVGRRGARSSRLGSGQRQS----ASEREKLRMRTLARALHELRRFLPPSVA 114
Query: 114 PDDAKLTKIETLRFAHNYIWALTQTLRIADHSLYALEPPAPHCGELGSPGGSP 166
P LTKIETLR A YI L+ L +++ S L+ G+ GSP G P
Sbjct: 115 PAGQSLTKIETLRLAIRYIGHLSAVLGLSEES---LQRRCRQRGDAGSPRGCP 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,265,340
Number of Sequences: 37866
Number of extensions: 544658
Number of successful extensions: 2997
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 2589
Number of HSP's gapped (non-prelim): 482
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.