Guide to the Human Genome
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Name: RABL4 Sequence: fasta or formatted (185aa) NCBI GI: 6857824
Description:

RAB, member of RAS oncogene family-like 4

Referenced in:

Additional Structural Proteins
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         20           2
 C cysteine            2.7          5           1
 D aspartate           5.4         10           1
 E glutamate           8.1         15           2
 F phenylalanine       5.9         11           1
 G glycine             5.9         11           1
 H histidine           1.6          3           1
 I isoleucine          2.2          4           1
 K lysine              7.0         13           1
 L leucine            10.8         20           1
 M methionine          2.2          4           1
 N asparagine          3.2          6           2
 P proline             3.8          7           1
 Q glutamine           3.2          6           1
 R arginine            3.8          7           2
 S serine              6.5         12           1
 T threonine           4.9          9           2
 V valine              8.6         16           2
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB, member of RAS oncogene family-like 4 
RAB35                 0.204   RAB35, member RAS oncogene family 
RAB30                 0.198   RAB30, member RAS oncogene family 
RAB1A                 0.195   RAB1A, member RAS oncogene family isoform 1 
RAB13                 0.193   RAB13, member RAS oncogene family 
RAB2A                 0.190   RAB2A, member RAS oncogene family 
RAB1B                 0.190   RAB1B, member RAS oncogene family 
LOC100131294          0.187   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.187   PREDICTED: similar to hCG24991 
LOC100131294          0.187   PREDICTED: similar to hCG24991 
RAB8B                 0.184   RAB8B, member RAS oncogene family 
RAB2B                 0.181   RAB2B protein isoform 1 
RAB5A                 0.181   RAB5A, member RAS oncogene family 
RAB10                 0.181   ras-related GTP-binding protein RAB10 
RAB8A                 0.178   mel transforming oncogene 
RAB43                 0.178   RAB43 protein 
RAB33A                0.178   Ras-related protein Rab-33A 
RAB37                 0.175   RAB37, member RAS oncogene family isoform 2 
RAB6A                 0.170   RAB6A, member RAS oncogene family isoform b 
RAB6B                 0.170   RAB6B, member RAS oncogene family 
RAB26                 0.170   RAB26, member RAS oncogene family 
RAB31                 0.167   RAB31, member RAS oncogene family 
RAB5C                 0.167   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.167   RAB5C, member RAS oncogene family isoform b 
RAB6A                 0.164   RAB6A, member RAS oncogene family isoform a 
RAB23                 0.164   Ras-related protein Rab-23 
RAB37                 0.164   RAB37, member RAS oncogene family isoform 3 
RAB23                 0.164   Ras-related protein Rab-23 
RAB39B                0.161   RAB39B, member RAS oncogene family 
RAB11A                0.161   Ras-related protein Rab-11A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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