Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BEX1 Sequence: fasta or formatted (125aa) NCBI GI: 68533249
Description:

brain expressed, X-linked 1

Referenced in:

Additional Brain Proteins
TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          7           1
 C cysteine            1.6          2           1
 D aspartate           4.0          5           1
 E glutamate          14.4         18           2
 F phenylalanine       1.6          2           1
 G glycine             4.0          5           1
 H histidine           4.8          6           2
 I isoleucine          1.6          2           1
 K lysine              4.8          6           1
 L leucine             8.8         11           1
 M methionine          6.4          8           2
 N asparagine          5.6          7           1
 P proline             6.4          8           2
 Q glutamine           5.6          7           1
 R arginine           12.0         15           3
 S serine              4.8          6           1
 T threonine           0.8          1           1
 V valine              4.8          6           1
 W tryptophan          0.8          1           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   brain expressed, X-linked 1 
BEX2                  0.902   brain expressed X-linked 2 
BEX4                  0.243   BEX family member 4 
BEX4                  0.243   BEX family member 4 
BEX5                  0.226   brain expressed, X-linked 5 
BEX5                  0.226   brain expressed, X-linked 5 
NGFRAP1               0.226   nerve growth factor receptor (TNFRSF16) associated p...
NGFRAP1               0.226   nerve growth factor receptor (TNFRSF16) associated pr...
NGFRAP1               0.166   nerve growth factor receptor (TNFRSF16) associated p...
TCEAL7                0.030   transcription elongation factor A (SII)-like 7 [Homo...
DDX23                 0.026   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
LOC283767             0.021   golgi autoantigen, golgin subfamily a-like 
ADRA2B                0.021   alpha-2B-adrenergic receptor 
SNRNP70               0.021   U1 small nuclear ribonucleoprotein 70 kDa 
LOC645202             0.017   PREDICTED: hypothetical protein LOC645202 
GOLGB1                0.017   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC727832             0.017   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.017   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.017   PREDICTED: Putative golgin subfamily A member 6-lik...
PCNT                  0.017   pericentrin 
LOC651807             0.013   PREDICTED: hypothetical protein 
TCHH                  0.013   trichohyalin 
MYH15                 0.013   myosin, heavy polypeptide 15 
RTF1                  0.013   Paf1/RNA polymerase II complex component 
MAP4K4                0.013   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.013   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.013   mitogen-activated protein kinase kinase kinase kinas...
TNIP3                 0.013   TNFAIP3 interacting protein 3 
TNIP3                 0.013   TNFAIP3 interacting protein 3 
SMC3                  0.013   structural maintenance of chromosomes 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press