Guide to the Human Genome
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Name: NGFRAP1 Sequence: fasta or formatted (101aa) NCBI GI: 46094062
Description:

nerve growth factor receptor (TNFRSF16) associated protein 1 isoform a

Referenced in:

Ovary, Uterus and Placenta
TNF and Related Signals

Other entries for this name:
alt prot [111aa] nerve growth factor receptor (TNFRSF16) associated protein 1 isof...
alt prot [111aa] nerve growth factor receptor (TNFRSF16) associated protein 1 isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          4           1
 C cysteine            2.0          2           1
 D aspartate           6.9          7           2
 E glutamate          10.9         11           2
 F phenylalanine       3.0          3           1
 G glycine            11.9         12           3
 H histidine           5.0          5           2
 I isoleucine          5.0          5           1
 K lysine              1.0          1           1
 L leucine             8.9          9           1
 M methionine          7.9          8           1
 N asparagine          6.9          7           1
 P proline             5.9          6           1
 Q glutamine           5.9          6           1
 R arginine           12.9         13           2
 S serine              1.0          1           1
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nerve growth factor receptor (TNFRSF16) associated p... 
NGFRAP1               1.000   nerve growth factor receptor (TNFRSF16) associated p...
NGFRAP1               1.000   nerve growth factor receptor (TNFRSF16) associated pr...
BEX5                  0.440   brain expressed, X-linked 5 
BEX5                  0.440   brain expressed, X-linked 5 
BEX4                  0.394   BEX family member 4 
BEX4                  0.394   BEX family member 4 
BEX1                  0.202   brain expressed, X-linked 1 
BEX2                  0.192   brain expressed X-linked 2 
TCEAL7                0.083   transcription elongation factor A (SII)-like 7 [Homo...
LOC100293599          0.021   PREDICTED: hypothetical protein 
LOC100288122          0.021   PREDICTED: hypothetical protein 
LOC100288122          0.021   PREDICTED: hypothetical protein XP_002344173 
AATK                  0.016   apoptosis-associated tyrosine kinase 
TCEAL1                0.016   transcription elongation factor A (SII)-like 1 [Homo...
TCEAL1                0.016   transcription elongation factor A (SII)-like 1 [Homo...
TCEAL1                0.016   transcription elongation factor A (SII)-like 1 [Homo...
ZNF74                 0.010   zinc finger protein 74 
PGM5                  0.010   phosphoglucomutase 5 
LOC65998              0.010   hypothetical protein LOC65998 
PI4K2B                0.010   phosphatidylinositol 4-kinase type 2 beta 
LAMA1                 0.010   laminin, alpha 1 precursor 
FNIP1                 0.010   folliculin interacting protein 1 isoform 2 
FNIP1                 0.010   folliculin interacting protein 1 isoform 1 
LRCH2                 0.010   leucine-rich repeats and calponin homology (CH) dom...
CCDC151               0.010   coiled-coil domain containing 151 
KCNAB3                0.005   potassium voltage-gated channel, shaker-related subf...
LOC441009             0.005   PREDICTED: hypothetical protein 
LOC441009             0.005   PREDICTED: hypothetical protein 
LOC441009             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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