Guide to the Human Genome
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Name: NGFRAP1 Sequence: fasta or formatted (111aa) NCBI GI: 46094060
Description:

nerve growth factor receptor (TNFRSF16) associated protein 1 isoform b

Referenced in:

Ovary, Uterus and Placenta
TNF and Related Signals

Other entries for this name:
alt prot [101aa] nerve growth factor receptor (TNFRSF16) associated protein 1 isof...
alt mRNA [111aa] nerve growth factor receptor (TNFRSF16) associated protein 1 isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          5           1
 C cysteine            1.8          2           1
 D aspartate           6.3          7           2
 E glutamate          12.6         14           2
 F phenylalanine       2.7          3           1
 G glycine            10.8         12           3
 H histidine           5.4          6           2
 I isoleucine          5.4          6           1
 K lysine              0.9          1           1
 L leucine             8.1          9           1
 M methionine          8.1          9           1
 N asparagine          8.1          9           1
 P proline             5.4          6           1
 Q glutamine           6.3          7           1
 R arginine           11.7         13           2
 S serine              0.9          1           1
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nerve growth factor receptor (TNFRSF16) associated p... 
NGFRAP1               1.000   nerve growth factor receptor (TNFRSF16) associated pr...
NGFRAP1               0.902   nerve growth factor receptor (TNFRSF16) associated p...
BEX5                  0.430   brain expressed, X-linked 5 
BEX5                  0.430   brain expressed, X-linked 5 
BEX4                  0.388   BEX family member 4 
BEX4                  0.388   BEX family member 4 
BEX1                  0.248   brain expressed, X-linked 1 
BEX2                  0.210   brain expressed X-linked 2 
TCEAL7                0.075   transcription elongation factor A (SII)-like 7 [Homo...
TCEAL8                0.051   transcription elongation factor A (SII)-like 8 [Homo...
TCEAL8                0.051   transcription elongation factor A (SII)-like 8 [Homo...
LOC100293599          0.019   PREDICTED: hypothetical protein 
LOC100288122          0.019   PREDICTED: hypothetical protein 
LOC100288122          0.019   PREDICTED: hypothetical protein XP_002344173 
AATK                  0.014   apoptosis-associated tyrosine kinase 
LRCH2                 0.014   leucine-rich repeats and calponin homology (CH) dom...
TCEAL1                0.014   transcription elongation factor A (SII)-like 1 [Homo...
TCEAL1                0.014   transcription elongation factor A (SII)-like 1 [Homo...
TCEAL1                0.014   transcription elongation factor A (SII)-like 1 [Homo...
EHMT2                 0.009   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.009   euchromatic histone-lysine N-methyltransferase 2 is...
ZNF74                 0.009   zinc finger protein 74 
PGM5                  0.009   phosphoglucomutase 5 
CLIC6                 0.009   chloride intracellular channel 6 
LOC65998              0.009   hypothetical protein LOC65998 
LAMA1                 0.009   laminin, alpha 1 precursor 
LOC100294181          0.009   PREDICTED: similar to HLA complex group 27 
RPGR                  0.009   retinitis pigmentosa GTPase regulator isoform C [Hom...
PI4K2B                0.009   phosphatidylinositol 4-kinase type 2 beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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