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Search of human proteins with 68509940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68509940 Golli-mbp isoform 1 [Homo sapiens] 624 e-179
gi|68509938 Golli-mbp isoform 2 [Homo sapiens] 390 e-109
gi|68509928 myelin basic protein isoform 3 [Homo sapiens] 359 1e-99
gi|68509930 myelin basic protein isoform 1 [Homo sapiens] 345 3e-95
gi|68509932 myelin basic protein isoform 4 [Homo sapiens] 328 4e-90
gi|4505123 myelin basic protein isoform 2 [Homo sapiens] 314 7e-86
gi|60097902 filaggrin [Homo sapiens] 50 2e-06
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 41 0.001
gi|150378498 fragile site-associated protein [Homo sapiens] 37 0.022
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 35 0.082
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 35 0.11
gi|156416026 zinc finger protein 219 [Homo sapiens] 34 0.14
gi|156415998 zinc finger protein 219 [Homo sapiens] 34 0.14
gi|156415996 zinc finger protein 219 [Homo sapiens] 34 0.14
gi|14210514 piggyBac transposable element derived 1 [Homo sapiens] 33 0.24
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.24
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.24
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 33 0.24
gi|4505999 protein phosphatase 1G [Homo sapiens] 33 0.31
gi|29826282 protein phosphatase 1G [Homo sapiens] 33 0.31
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 33 0.41
gi|88759339 aster-associated protein [Homo sapiens] 33 0.41
gi|57864582 hornerin [Homo sapiens] 32 0.53
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 32 0.53
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.70
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 32 0.70
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 32 0.91
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 32 0.91
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 32 0.91
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 32 0.91
>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
Length = 304
Score = 624 bits (1609), Expect = e-179
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
Sbjct: 1 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
Query: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
Sbjct: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
Sbjct: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
Query: 181 GDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG 240
GDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG
Sbjct: 181 GDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG 240
Query: 241 RGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSP 300
RGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSP
Sbjct: 241 RGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSP 300
Query: 301 MARR 304
MARR
Sbjct: 301 MARR 304
>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
Length = 197
Score = 390 bits (1003), Expect = e-109
Identities = 193/194 (99%), Positives = 193/194 (99%)
Query: 1 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
Sbjct: 1 MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
Query: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
Sbjct: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
Sbjct: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
Query: 181 GDRGAPKRGSGKDS 194
GDRGAPKRGSGK S
Sbjct: 181 GDRGAPKRGSGKVS 194
>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
Length = 171
Score = 359 bits (922), Expect = 1e-99
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 193
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
Query: 194 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 253
SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE
Sbjct: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
Query: 254 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 304
GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171
>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
Length = 197
Score = 345 bits (885), Expect = 3e-95
Identities = 171/197 (86%), Positives = 171/197 (86%), Gaps = 26/197 (13%)
Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 192
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 193 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 227
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 228 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 287
VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
Query: 288 FKLGGRDSRSGSPMARR 304
FKLGGRDSRSGSPMARR
Sbjct: 181 FKLGGRDSRSGSPMARR 197
>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
Length = 160
Score = 328 bits (841), Expect = 4e-90
Identities = 160/171 (93%), Positives = 160/171 (93%), Gaps = 11/171 (6%)
Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 193
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
Query: 194 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 253
SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK GAE
Sbjct: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK-----------GAE 109
Query: 254 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 304
GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 110 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160
>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
Length = 186
Score = 314 bits (804), Expect = 7e-86
Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)
Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG-- 191
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 192 ------------------------KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 227
KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 228 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 287
VTPRTPPPSQGK GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169
Query: 288 FKLGGRDSRSGSPMARR 304
FKLGGRDSRSGSPMARR
Sbjct: 170 FKLGGRDSRSGSPMARR 186
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 50.1 bits (118), Expect = 2e-06
Identities = 78/339 (23%), Positives = 122/339 (35%), Gaps = 62/339 (18%)
Query: 4 HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSS 59
H+G R A S +S+ +G+SE R + S+D++ G + D+ + +G++S
Sbjct: 908 HSGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHSEDSERWSGSAS 967
Query: 60 QDTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQT 119
++ + +A ++ HP R D G + R S + +T
Sbjct: 968 RN-----HRGSAQEQSRHGSRHP----------RSHHEDRAGHGHSADSSRQSGTPHAET 1012
Query: 120 IQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRH------RDTGILD 173
AA+S ++ P +RHGS++ +A D +RH +PR RD+G
Sbjct: 1013 SSGGQAASSHE----QARSSPGERHGSRHQQSA---DSSRHSGIPRRQASSAVRDSGHWG 1065
Query: 174 SIGRFFGGDRGAPKRG-----SGKDSHHPARTAHYGSLPQKSHGR------------TQD 216
S G G + SG P + +H S S GR T +
Sbjct: 1066 SSGSQASDSEGHSEESDTQSVSGHGQDGPHQQSHQESARDWSGGRSGRSGSFIYQVSTHE 1125
Query: 217 ENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQ-----RPGFGYGGRASDY--- 268
++ H T R + R SR S EGQ PG GGR +
Sbjct: 1126 QSESAHGRTRTSTGRRQGSHHEQAR--DSSRHSASQEGQDTIRAHPGSRRGGRQGSHHEQ 1183
Query: 269 ---KSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 304
+S H G G SRS S R+
Sbjct: 1184 SVDRSGHSGSHHSHTTSQGRSDASHGQSGSRSASRQTRK 1222
Score = 43.5 bits (101), Expect = 2e-04
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 4 HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSS 59
H+G R A +S +S+ +G+SE R + S+D++ G + D+ + +G++S
Sbjct: 2529 HSGSRHHEASSRADSSGHSQVGQGQSEGPRTSRNWGSSFSQDSDSQGHSEDSERWSGSAS 2588
Query: 60 QDTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQT 119
++ + ++ D HP R D G + R S + QT
Sbjct: 2589 RNHHGSAQEQLRDGSR-----HP----------RSHQEDRAGHGHSADSSRQSGTRHTQT 2633
Query: 120 IQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFF 179
AA+S ++ +RHGS + +A + H+ G + + DS R +
Sbjct: 2634 SSGGQAASSHE----QARSSAGERHGSHHQQSADSSRHS--GIGHGQASSAVRDSGHRGY 2687
Query: 180 GGDRGAPKRGSGKDSHHPARTAH-YGSLPQKSH 211
G + + G +DS + +AH Q+SH
Sbjct: 2688 SGSQASDNEGHSEDSDTQSVSAHGQAGSHQQSH 2720
Score = 42.7 bits (99), Expect = 4e-04
Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 56/306 (18%)
Query: 4 HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
H+G R +S +S+ +GES + + S+D + G ++ ++ S+
Sbjct: 1556 HSGSRHHEPSTRAGSSRHSQVGQGESAGSKTSRRQGSSVSQDRDSEGHSEDSERRSESAS 1615
Query: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
++ + + +H D S H + R S + +T
Sbjct: 1616 RNHYGSAREQSRHGSRNPRSHQEDRASHGH--------------SAESSRQSGTRHAETS 1661
Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGIL-DSIGRFF 179
AA+S+ ++ P +RHGS++ +A + + G R +D+ ++ DS R
Sbjct: 1662 SGGQAASSQE----QARSSPGERHGSRHQQSADSSTDSGTG---RRQDSSVVGDSGNRGS 1714
Query: 180 GGDRGAPKRGSGKDSHHPARTAHYGSLP-QKSH-----GRTQDEN---------PVVHFF 224
G + + G ++S + +AH + P Q+SH G++ + + H
Sbjct: 1715 SGSQASDSEGHSEESDTQSVSAHGQAGPHQQSHQESTRGQSGERSGRSGSFLYQVSTHEQ 1774
Query: 225 KNIVTPRTPPPSQGKGR-----GLSLSRFSWGAEGQ-----RPGFGYGGRASDY------ 268
RT P + G+ R SR S EGQ PG GGR +
Sbjct: 1775 SESAHGRTGPSTGGRQRSRHEQARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHYEQSVD 1834
Query: 269 KSAHKG 274
S H G
Sbjct: 1835 SSGHSG 1840
Score = 42.7 bits (99), Expect = 4e-04
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 4 HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSS 59
H+G R A S +S+ +G+SE R + S+D++ G + D+ + +G++S
Sbjct: 2853 HSGSRHHEASTHADISRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSAS 2912
Query: 60 QDTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQT 119
++ + ++ D HP R D G + R S + QT
Sbjct: 2913 RNHHGSAQEQLRDGSR-----HP----------RSHQEDRAGHGHSADSSRQSGTRHTQT 2957
Query: 120 IQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFF 179
AA+S ++ +RHGS + +A + H+ G + + DS R +
Sbjct: 2958 SSGGQAASSHE----QARSSAGERHGSHHQQSADSSRHS--GIGHGQASSAVRDSGHRGY 3011
Query: 180 GGDRGAPKRGSGKDSHHPARTAH-YGSLPQKSH 211
G + + G +DS + +AH Q+SH
Sbjct: 3012 SGSQASDNEGHSEDSDTQSVSAHGQAGSHQQSH 3044
Score = 42.4 bits (98), Expect = 5e-04
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 16 STNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSSQDTAVTDSKRTADPK 74
S +S+ +G+SE R + S+D++ G + D+ + +G++S++ + + +
Sbjct: 3192 SRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRN-----HRGSVQEQ 3246
Query: 75 NAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVM 134
+ HP R D G + + R S + +T AA+S
Sbjct: 3247 SRHGSRHP----------RSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHE---- 3292
Query: 135 ASQKRPSQRHGSKYLATASTMDHARHGFLPR-HRDTGILDSIGRFFGGDRGAPKRGSGKD 193
++ P +RHGS++ +A D +RH +PR + + DS G + + G ++
Sbjct: 3293 QARSSPGERHGSRHQQSA---DSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEE 3349
Query: 194 SHHPARTAHYGSLP-QKSH 211
S + + H + P Q+SH
Sbjct: 3350 SDTQSVSGHGQAGPHQQSH 3368
Score = 42.0 bits (97), Expect = 7e-04
Identities = 72/316 (22%), Positives = 127/316 (40%), Gaps = 52/316 (16%)
Query: 2 GNHAGKRELNAEKASTNSETNRGESEKKR-NLGELSRTTSEDNEVFGEADANQNNGTS-S 59
G+ + R+ +K S + + G + + + SR + E + +++ G+S S
Sbjct: 1212 GSRSASRQTRKDKQSGDGSRHSGSRHHEAASWADSSRHSQVGQEQSSGSRTSRHQGSSVS 1271
Query: 60 QDTAVTDSKRTADPKNAWQDAHPADPGSRPH--LIRLFSRDAPGREDNTFKDRPSESDEL 117
QD+ DS+R +D + SR H R SRD +DR S
Sbjct: 1272 QDS---DSERHSDDSERLSGS-----ASRNHHGSSREQSRDGSRHPGFHQEDRASHGHSA 1323
Query: 118 QTIQEDSAATSESLD---VMASQKR----PSQRHGSKYLATASTMDHARHGFLPRHRDTG 170
+ ++ +ES ++S ++ P +RHGS++ +A + H+ G R +
Sbjct: 1324 DSSRQSGTHHTESSSHGQAVSSHEQARSSPGERHGSRHQQSADSSRHS--GIGHRQASSA 1381
Query: 171 ILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLP-QKSH-----GRTQDENPVVHFF 224
+ DS R G + G +DS + +AH + P Q+SH G++ + + F
Sbjct: 1382 VRDSGHRGSSGSQVTNSEGHSEDSDTQSVSAHGQAGPHQQSHKESARGQSGESSGRSRSF 1441
Query: 225 KNIVTP---------RTPPPSQGK-----GRGLSLSRFSWGAEGQ-----RPGFGYGGRA 265
V+ +T P + G+ + + SR S +GQ PG GGR
Sbjct: 1442 LYQVSSHEQSESTHGQTAPSTGGRQGSRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQ 1501
Query: 266 SDY------KSAHKGF 275
Y +S H G+
Sbjct: 1502 GSYHEQSVDRSGHSGY 1517
Score = 30.0 bits (66), Expect = 2.6
Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 21/234 (8%)
Query: 6 GKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGT--SSQDTA 63
GK + + ++ GES + +T E +E A G S D A
Sbjct: 2063 GKAGPHQQSHKESARGQSGESSGRSGSFLYQVSTHEQSESTHGQSAPSTGGRQGSHYDQA 2122
Query: 64 VTDSKRTADPKNAWQDAHPADPGSR------PHLIRLFSRDAPGREDNTFKDRPSESDEL 117
S+ +A + QD PG H + R ++ SD
Sbjct: 2123 QDSSRHSASQEG--QDTIRGHPGPSRGGRQGSHQEQSVDRSGHSGSHHSHTTSQGRSDAS 2180
Query: 118 QTIQEDSAATSESLDVMASQKRPSQRH-GSKYLATASTMDHARHGFLPRHRDTGILDSIG 176
+ +A+ ++ D Q RH GS + +S D +RH + + + +G S
Sbjct: 2181 RGQSGSRSASRKTYD--KEQSGDGSRHSGSHHHEASSWADSSRHSLVGQGQSSGPRTSRP 2238
Query: 177 RFFGGDRGAPKRGSGKDSHHPARTA---HYGSLPQKS-----HGRTQDENPVVH 222
R + + G +DS + +A H+GS ++S H R+ E+ H
Sbjct: 2239 RGSSVSQDSDSEGHSEDSERRSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGH 2292
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRT 70
+++ S+ SE++ +S+ K + + + + S DN ++ + N+ SS + +DS +
Sbjct: 621 DSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSS 680
Query: 71 ADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSES 130
+D N+ + +D + S D+ D+ D S+S + DS+ +S+S
Sbjct: 681 SDSSNSSDSSDSSDSSNSSE-----SSDSSDSSDSDSSD-SSDSSNSNSSDSDSSNSSDS 734
Query: 131 LD 132
D
Sbjct: 735 SD 736
Score = 33.9 bits (76), Expect = 0.18
Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 8/158 (5%)
Query: 2 GNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
GN+ ++ S+++ +S N + S ++ D+ +D+N ++ + S D
Sbjct: 530 GNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDS-----SDSNSSSDSDSSD 584
Query: 62 TAVTDS--KRTADPKNAWQDAHPADPG-SRPHLIRLFSRDAPGREDNTFKDRPSESDELQ 118
+ +DS ++D N+ + +D S S+ + ++ D S+SD
Sbjct: 585 SDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSD 644
Query: 119 TIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMD 156
+ DS+ S+S D S S ++S+ D
Sbjct: 645 SNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSD 682
Score = 32.0 bits (71), Expect = 0.70
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTT-SEDNEVFGEADANQNNGTSSQDTAVTDSKR 69
N+ + ++ +N +S N + S ++ S DN ++ + ++ SS + +DS
Sbjct: 899 NSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSN 958
Query: 70 TADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSE 129
++D N+ + +D S S D+ D++ S+S DS+ +S+
Sbjct: 959 SSDSSNS---SDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSN----SSDSSDSSD 1011
Query: 130 SLDVMASQKRPSQRHGSKYLATASTMD 156
S D S + S ++ + D
Sbjct: 1012 SSDSSNSSDSSNSSDSSNSSDSSDSSD 1038
Score = 31.2 bits (69), Expect = 1.2
Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 5/147 (3%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTT-SEDNEVFGEADANQNNGTSSQDTAVTDSKR 69
N+ +S +S ++ +S N + S ++ S D+ + N N+ SS +DS
Sbjct: 890 NSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNS---SDSSD 946
Query: 70 TADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSE 129
++D N+ ++ +D + S D+ +++ S+S + + DS+ +S+
Sbjct: 947 SSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSD-SSDSSDSSNSSD 1005
Query: 130 SLDVMASQKRPSQRHGSKYLATASTMD 156
S D S + S ++++ D
Sbjct: 1006 SSDSSDSSDSSNSSDSSNSSDSSNSSD 1032
Score = 28.5 bits (62), Expect = 7.7
Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRT 70
++++++ N + N + G+ S + E + NG+ S+ DS T
Sbjct: 467 SSDESNGNDDANSESDNNSSSRGDASYNSDESKD--------NGNGSDSKGAEDDDSDST 518
Query: 71 ADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSES 130
+D N+ + + + G+ + + D+ D + SD + DS+ ++ S
Sbjct: 519 SDTNNSDSNGN-GNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSS 577
Query: 131 LDVMASQKRPSQRHGSKYLATASTMD 156
D +S S S ++++ D
Sbjct: 578 SDSDSSDSDSSDSSDSDSSDSSNSSD 603
>gi|150378498 fragile site-associated protein [Homo sapiens]
Length = 5005
Score = 37.0 bits (84), Expect = 0.022
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 4 HAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDT- 62
+ G R NA+ TN+E N+ ES K +LG R TS+ + G D + D+
Sbjct: 2630 NGGNRVNNAKNKRTNNENNKKESRNKNSLGRSERRTSKVSRK-GSKDVVDHMTIHMDDSD 2688
Query: 63 AVTDSKRTADPKNAWQDAH 81
++T S+++ WQ+ +
Sbjct: 2689 SITVSEQSEPSAECWQNMY 2707
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 35.0 bits (79), Expect = 0.082
Identities = 50/205 (24%), Positives = 71/205 (34%), Gaps = 34/205 (16%)
Query: 29 KRNLGELSRTTSEDNEVFGEADANQN---NGTSSQDTAVTDSKRTADPKNAWQDAHPADP 85
+R LG S+ +AD QN NG + + S R P ++ + PA P
Sbjct: 440 RRGLGPHSKAFIVAMPTTSKADVEQNTEDNGKPEKPEPSSPSPRA--PASSQHPSVPASP 497
Query: 86 -------------------GSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAA 126
G P +L ++ A E+ + +E +EDS
Sbjct: 498 QGRNAKDLLLDLKNKILANGGAPRKPQLRAKKA---EELDLQSTEITGEEELGSREDSPM 554
Query: 127 TSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGD--RG 184
+ RP RHG +A T AR LPR +D G G
Sbjct: 555 SPSDTQDQKRTLRPPSRHGHSVVAPGRTAVRARMPALPRREG---VDKPGFSLATQPRPG 611
Query: 185 APKRGSGKDSHHPAR--TAHYGSLP 207
AP S +HH + T+H SLP
Sbjct: 612 APPSASASPAHHASTQGTSHRPSLP 636
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 7 KRELNAEKA-----STNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
KR L++ ++ S NSE + E KR++ + R+T E +E E + + + +
Sbjct: 1241 KRRLSSSESEESYLSKNSEDDELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRL 1300
Query: 62 TAV-TDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
+ TD + + D NA DA+ S+P ++ P +++T K ESDE
Sbjct: 1301 HRIETDEEESCD--NAHGDANQPARDSQPRVL-------PSEQESTKKPYRIESDE 1347
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.3 bits (77), Expect = 0.14
Identities = 61/243 (25%), Positives = 82/243 (33%), Gaps = 47/243 (19%)
Query: 67 SKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAA 126
S R + + + A P PG R S P R + P E +E+ +E++ A
Sbjct: 383 SLRAGEGRPNGEGAEPG-PGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 127 TSESLDVMAS-QKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGA 185
SL +AS RP + G H+ + R T + G GG R
Sbjct: 442 RGRSLGSLASLHPRPGEGPG-----------HSASAAGAQARSTATQEENGLLVGGTRPE 490
Query: 186 PKRG-SGKD----------SHH--PARTAHYGSLPQK----SHGRTQDENPVVHFFKNI- 227
RG +GKD +HH H G P K + TQ + H ++
Sbjct: 491 GGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHR 550
Query: 228 ---------VTPRTPPPSQ-----GKGRGLSLSRFSW--GAEGQRPGFGYGGRASDYKSA 271
P PPPSQ G S +W GA RP G S K A
Sbjct: 551 EQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPA 610
Query: 272 HKG 274
G
Sbjct: 611 SPG 613
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.3 bits (77), Expect = 0.14
Identities = 61/243 (25%), Positives = 82/243 (33%), Gaps = 47/243 (19%)
Query: 67 SKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAA 126
S R + + + A P PG R S P R + P E +E+ +E++ A
Sbjct: 383 SLRAGEGRPNGEGAEPG-PGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 127 TSESLDVMAS-QKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGA 185
SL +AS RP + G H+ + R T + G GG R
Sbjct: 442 RGRSLGSLASLHPRPGEGPG-----------HSASAAGAQARSTATQEENGLLVGGTRPE 490
Query: 186 PKRG-SGKD----------SHH--PARTAHYGSLPQK----SHGRTQDENPVVHFFKNI- 227
RG +GKD +HH H G P K + TQ + H ++
Sbjct: 491 GGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHR 550
Query: 228 ---------VTPRTPPPSQ-----GKGRGLSLSRFSW--GAEGQRPGFGYGGRASDYKSA 271
P PPPSQ G S +W GA RP G S K A
Sbjct: 551 EQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPA 610
Query: 272 HKG 274
G
Sbjct: 611 SPG 613
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.3 bits (77), Expect = 0.14
Identities = 61/243 (25%), Positives = 82/243 (33%), Gaps = 47/243 (19%)
Query: 67 SKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAA 126
S R + + + A P PG R S P R + P E +E+ +E++ A
Sbjct: 383 SLRAGEGRPNGEGAEPG-PGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWA 441
Query: 127 TSESLDVMAS-QKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGA 185
SL +AS RP + G H+ + R T + G GG R
Sbjct: 442 RGRSLGSLASLHPRPGEGPG-----------HSASAAGAQARSTATQEENGLLVGGTRPE 490
Query: 186 PKRG-SGKD----------SHH--PARTAHYGSLPQK----SHGRTQDENPVVHFFKNI- 227
RG +GKD +HH H G P K + TQ + H ++
Sbjct: 491 GGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHR 550
Query: 228 ---------VTPRTPPPSQ-----GKGRGLSLSRFSW--GAEGQRPGFGYGGRASDYKSA 271
P PPPSQ G S +W GA RP G S K A
Sbjct: 551 EQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPA 610
Query: 272 HKG 274
G
Sbjct: 611 SPG 613
>gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]
Length = 809
Score = 33.5 bits (75), Expect = 0.24
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 29 KRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTD--SKRTADPKNAWQDAHPADPG 86
K L + + TSE+ E GEA N + Q T ++RT N +D HP D
Sbjct: 264 KDRLFKAKQETSEEMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLW 323
Query: 87 SRPHLIRLFSRDAPGREDNTFKDRPSESDELQ 118
+R H+ L KD+ S+ LQ
Sbjct: 324 ARMHISSLEYAAGDITRKGRKKDKARVSELLQ 355
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.5 bits (75), Expect = 0.24
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 183 RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 232
RGA P GK+ HP AR L G T P +TPR
Sbjct: 38 RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95
Query: 233 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 284
P + G GR G + R G EG R G+ G R S KG +G D +G
Sbjct: 96 ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155
Query: 285 SKIFKLGGRDSRSGSPMAR 303
+ GG + +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.5 bits (75), Expect = 0.24
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 183 RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 232
RGA P GK+ HP AR L G T P +TPR
Sbjct: 38 RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95
Query: 233 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 284
P + G GR G + R G EG R G+ G R S KG +G D +G
Sbjct: 96 ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155
Query: 285 SKIFKLGGRDSRSGSPMAR 303
+ GG + +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.5 bits (75), Expect = 0.24
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 183 RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 232
RGA P GK+ HP AR L G T P +TPR
Sbjct: 38 RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95
Query: 233 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 284
P + G GR G + R G EG R G+ G R S KG +G D +G
Sbjct: 96 ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155
Query: 285 SKIFKLGGRDSRSGSPMAR 303
+ GG + +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173
>gi|4505999 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 33.1 bits (74), Expect = 0.31
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNN-------GTSSQDTA 63
N K +S++ G E+ + G ED+ E + +N G SS
Sbjct: 163 NCHKGPPHSKSGGGTGEEPGSQGLNGEAGPEDST--RETPSQENGPTAKAYTGFSSNSER 220
Query: 64 VTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQED 123
T++ + +P +A P+ + L R+ + F+D ESDE + +ED
Sbjct: 221 GTEAGQVGEPGIPTGEAGPSCSSASDKLPRV-------AKSKFFEDSEDESDEAEEEEED 273
Query: 124 SAATSESLDVMASQKRPSQ 142
S SE D +S++ ++
Sbjct: 274 SEECSEEEDGYSSEEAENE 292
>gi|29826282 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 33.1 bits (74), Expect = 0.31
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNN-------GTSSQDTA 63
N K +S++ G E+ + G ED+ E + +N G SS
Sbjct: 163 NCHKGPPHSKSGGGTGEEPGSQGLNGEAGPEDST--RETPSQENGPTAKAYTGFSSNSER 220
Query: 64 VTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQED 123
T++ + +P +A P+ + L R+ + F+D ESDE + +ED
Sbjct: 221 GTEAGQVGEPGIPTGEAGPSCSSASDKLPRV-------AKSKFFEDSEDESDEAEEEEED 273
Query: 124 SAATSESLDVMASQKRPSQ 142
S SE D +S++ ++
Sbjct: 274 SEECSEEEDGYSSEEAENE 292
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 32.7 bits (73), Expect = 0.41
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 15 ASTNSET-NRGESEKKRNLGELSRTTSE---DNEVFGEADANQNNGTSSQDTAVTDSKRT 70
A TN + N GE + +N +++ +TS +N G + ++ T+ ++ V+D
Sbjct: 177 ALTNQQPQNNGEVQNSKNQSDINHSTSGSHYENSQRGPVSSTSDSSTNCKNAVVSDLSE- 235
Query: 71 ADPKNAWQDAHPADPGSRPHL 91
K AW P+ PGS P L
Sbjct: 236 ---KEAW----PSAPGSDPEL 249
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 32.7 bits (73), Expect = 0.41
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 2 GNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
GN +GK E+ + N + + + K+ + TT+ + + A+ ++
Sbjct: 262 GNASGKDP--NEEITENHNSLKSDENKENSFSADHVTTAVEKSKESQVTADDLEEEKAKA 319
Query: 62 TAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQ 121
+ D RT DP + + L S A T +DR ++ + +
Sbjct: 320 ELIMDDDRTVDPLLSKSQS------------ILISTSATASSKKTIEDRNIKNKKSTNNR 367
Query: 122 EDSAA----TSESLDVMASQKR-PSQRHGSKYLATASTMD 156
SA+ TSE L +S++R PS S YL T +D
Sbjct: 368 ASSASARLMTSEFLKKSSSKRRTPSTTTSSHYLGTLKVLD 407
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 32.3 bits (72), Expect = 0.53
Identities = 46/250 (18%), Positives = 77/250 (30%), Gaps = 23/250 (9%)
Query: 36 SRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLF 95
S + + G+A ++ +G+SS+ ++ +A ++ + H + G P
Sbjct: 371 SSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSP------ 424
Query: 96 SRDAPGREDNTFKDRPSESDELQTIQEDSAA----TSESLDVMASQKRPSQRHGSKYLAT 151
G+ + PS S++ + S H S Y
Sbjct: 425 ---GHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHESSSEHSSGYTQH 481
Query: 152 AS----TMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTAHYGSLP 207
S + H +HG G G GS + H + G P
Sbjct: 482 GSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSP 541
Query: 208 QKSHGR-----TQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYG 262
S GR Q + H + + + P G G L GQ G+G
Sbjct: 542 SPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHSSGLGHQE-SRSGQSSGYGQH 600
Query: 263 GRASDYKSAH 272
G +S + S H
Sbjct: 601 GSSSGHSSTH 610
Score = 32.0 bits (71), Expect = 0.70
Identities = 55/288 (19%), Positives = 94/288 (32%), Gaps = 44/288 (15%)
Query: 2 GNHAGKRELNAEKASTNSETNRGESEKKRNLGE-LSRTTSEDNEVFGEADANQNNGTSSQ 60
G H ++ NS++++ + G S + G++ +N +G+ S
Sbjct: 167 GQHNSYSGQSSSYGEQNSDSHQSSGRGQCGSGSGQSPNYGQHGSGSGQSSSNDTHGSGSG 226
Query: 61 DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
++ +++ +++ H + G + SR +
Sbjct: 227 QSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRS----------- 275
Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
S+ +S S S R S HG + + + H RHG H + G +
Sbjct: 276 ---SSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYS 332
Query: 181 GDRGAPKRGSGKD----------------SHHPARTAHYGSLPQKSHGRTQDENPVVHFF 224
RG + GSG+ S H + + H S Q HG T +
Sbjct: 333 YSRGHYESGSGQTSGFGQHESGSGQSSGYSKHGSGSGHSSS--QGQHGSTSGQAS----- 385
Query: 225 KNIVTPRTPPPSQGKGRGLSLSRFSWG------AEGQRPGFGYGGRAS 266
+ + S G+ S SR S G GQ PG G G S
Sbjct: 386 SSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSGS 433
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/146 (18%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 11 NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRT 70
++ + + S + GE + G+ + +SED+ ++++ + +G ++ TA +SK
Sbjct: 688 SSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSK-- 745
Query: 71 ADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSES 130
A K+ +D + S+ + D+ E ++ +D S+S+ + + + SES
Sbjct: 746 AKGKSDSEDGEKENEKSK-------TSDSSNDESSSIEDSSSDSES----ESEPESESES 794
Query: 131 LDVMASQKRPSQRHGSKYLATASTMD 156
V +++ +++ + S +D
Sbjct: 795 RRVTKEKEKKTKQDRTPLTKDVSLLD 820
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.0 bits (71), Expect = 0.70
Identities = 41/178 (23%), Positives = 59/178 (33%), Gaps = 17/178 (9%)
Query: 98 DAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDH 157
D+ R + R S+ + +E +ES R S RH S + S H
Sbjct: 215 DSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTES------PGRRSHRHSSGSSHSPSLSSH 268
Query: 158 ARHG-----FLPRHRDTGILDSIGRFFGGDRGAPKRGSG-----KDSHHPARTAHYGSLP 207
P+HRD G R G +P GSG ++ R+ +G P
Sbjct: 269 YSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRP 328
Query: 208 QKSHG-RTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGR 264
+H + +P PP++GK S S G R G G R
Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 32.0 bits (71), Expect = 0.70
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 40 SEDNEVFGEADANQNNGTSSQDTAVTDSKRTAD----PKNAWQDAHPADPGSRPHLI--- 92
S+D+E GEA + N+ ++ + +++RTA+ PK + DP P +
Sbjct: 714 SDDSESDGEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEE 773
Query: 93 -----RLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLD 132
RL + RE K R +SD+L+T A + +D
Sbjct: 774 KKIEYRLLKEEIANRE----KQRLIKSDQLKTSSSSPANSDVEID 814
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 230 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 279
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 342 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 380
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 230 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 279
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 443 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 481
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 230 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 279
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 339 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 377
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 230 PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 279
PR PPP +G+GRG G R G+GY Y+ + + G D
Sbjct: 440 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 478
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,331,430
Number of Sequences: 37866
Number of extensions: 693602
Number of successful extensions: 2009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1933
Number of HSP's gapped (non-prelim): 141
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.