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Search of human proteins with 66932968
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66932968 GTP cyclohydrolase 1 isoform 1 [Homo sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66932968 GTP cyclohydrolase 1 isoform 1 [Homo sapiens] 504 e-143
gi|4503949 GTP cyclohydrolase 1 isoform 1 [Homo sapiens] 504 e-143
gi|66932970 GTP cyclohydrolase 1 isoform 2 [Homo sapiens] 424 e-119
gi|66932972 GTP cyclohydrolase 1 isoform 3 [Homo sapiens] 423 e-119
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 42 5e-04
gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 41 0.001
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 39 0.006
gi|55741677 SET domain containing 1A [Homo sapiens] 38 0.009
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.016
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 36 0.036
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 36 0.036
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.047
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.047
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 35 0.047
gi|195947369 junction-mediating and regulatory protein [Homo sap... 35 0.061
gi|169171704 PREDICTED: similar to hCG1770601 [Homo sapiens] 35 0.080
gi|169171845 PREDICTED: similar to hCG1770601 [Homo sapiens] 35 0.080
gi|169171183 PREDICTED: similar to hCG1770601 [Homo sapiens] 35 0.080
gi|239508957 PREDICTED: similar to hCG1770601 [Homo sapiens] 35 0.080
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.080
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.14
gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 34 0.14
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 33 0.18
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 33 0.23
gi|71043876 undifferentiated embryonic cell transcription factor... 33 0.23
gi|133908641 myosin binding protein C, fast type [Homo sapiens] 33 0.23
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.23
gi|158534059 formin binding protein 4 [Homo sapiens] 33 0.23
>gi|66932968 GTP cyclohydrolase 1 isoform 1 [Homo sapiens]
Length = 250
Score = 504 bits (1297), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
Sbjct: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
Query: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
Sbjct: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
Query: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
Sbjct: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
Query: 181 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 240
VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
Sbjct: 181 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 240
Query: 241 REEFLTLIRS 250
REEFLTLIRS
Sbjct: 241 REEFLTLIRS 250
>gi|4503949 GTP cyclohydrolase 1 isoform 1 [Homo sapiens]
Length = 250
Score = 504 bits (1297), Expect = e-143
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
Sbjct: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
Query: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
Sbjct: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
Query: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
Sbjct: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
Query: 181 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 240
VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT
Sbjct: 181 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKT 240
Query: 241 REEFLTLIRS 250
REEFLTLIRS
Sbjct: 241 REEFLTLIRS 250
>gi|66932970 GTP cyclohydrolase 1 isoform 2 [Homo sapiens]
Length = 233
Score = 424 bits (1090), Expect = e-119
Identities = 211/223 (94%), Positives = 214/223 (95%)
Query: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
Sbjct: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
Query: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
Sbjct: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
Query: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
Sbjct: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
Query: 181 VQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNS 223
VQERLTKQIAVAITEALRPAGVGVVVEAT +G+ + S
Sbjct: 181 VQERLTKQIAVAITEALRPAGVGVVVEATKSNKYNKGLSPLLS 223
>gi|66932972 GTP cyclohydrolase 1 isoform 3 [Homo sapiens]
Length = 213
Score = 423 bits (1088), Expect = e-119
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS
Sbjct: 1 MEKGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
Query: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA
Sbjct: 61 EEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDA 120
Query: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ
Sbjct: 121 IFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQ 180
Query: 181 VQERLTKQIAVAITEALRPAGVGVVVEAT 209
VQERLTKQIAVAITEALRPAGVGVVVEAT
Sbjct: 181 VQERLTKQIAVAITEALRPAGVGVVVEAT 209
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 42.0 bits (97), Expect = 5e-04
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 5 PVRAPAE--KPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQP-ADGWKGERPRSE 61
P AP+ P + C N R PP P + + + R +SA P + GW+G R R+
Sbjct: 1368 PCLAPSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNS 1427
Query: 62 EDNELNLPNLAAAYSSILSSLGENPQRQGLLKTP---WRAAS 100
+ A SS SS + R L P WR +S
Sbjct: 1428 RSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKRWRRSS 1469
>gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens]
Length = 991
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGP---SRPAEKPPR----PEAKSAQPADGWKG 55
+GP AP EK G G PP+ RP+ PPR PE + D WKG
Sbjct: 795 QGPPMAP-EKYTGEEDGAGGHSPAPPQTEECLRERPSTCPPRDQGTPEVQPTPAKDTWKG 853
Query: 56 ERPRSEEDNELNLP 69
+RPRS+++N + P
Sbjct: 854 KRPRSQQENPESQP 867
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 38.5 bits (88), Expect = 0.006
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 5 PVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
P R P +P+ S P P P P+RP PP P + +P W+G R RS
Sbjct: 100 PRRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPR-AWRGSRRRS 154
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 37.7 bits (86), Expect = 0.009
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 13/139 (9%)
Query: 5 PVRAPAEKPRGARCSNGFPERDPPR------PGPSRPAEKPPRPEAKSA------QPADG 52
P RA E+P GA + ER PP P PSRP ++ RP A A +P G
Sbjct: 384 PRRATREEPPGAPFAENTAERFPPSYTSYLPPEPSRPTDQDYRPPASEAPPPEPPEPGGG 443
Query: 53 WKGERPRSEEDNELNLPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQET 112
G P E + P A+ S S E S ++ K +
Sbjct: 444 GGGGGPSPEREEVRTSPRPASPARS-GSPAPETTNESVPFAQHSSLDSRIEMLLKEQRSK 502
Query: 113 ISDVLNDAIFDEDHDEMVI 131
S + +D +E++ MV+
Sbjct: 503 FSFLASDTEEEEENSSMVL 521
Score = 27.7 bits (60), Expect = 9.8
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEK---PPRPEAKSAQPADGWKGERPR 59
+G +R P+ K + S + RP PS PAE+ P E ++ +P G G +P
Sbjct: 885 RGALRLPSFKVKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEP--GRPGTKP- 941
Query: 60 SEEDNELNLPNLAAAYSSILSSLGENPQRQ 89
+ D E S L S GE ++
Sbjct: 942 PKRDEERGKTQGKHRKSFALDSEGEEASQE 971
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.016
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKP-PRPEAKSAQPADGWKGERPR 59
R P + PR + + G P PP P+ PA+ P PRPE++ + W+ +RPR
Sbjct: 103 RRPGKPPRRPKGAAGHPSA-PPAAAPAAPAQPPAPRPESQLSDRPQSWE-QRPR 154
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 35.8 bits (81), Expect = 0.036
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKP-PRPEAKSAQPADGWKGERPR 59
R P + PR + + G P PP P+ PA+ P PRPE++ + W+ ++PR
Sbjct: 103 RRPGKPPRRPKGAAGHPSA-PPAAAPAAPAQPPAPRPESQLSDRPQSWE-QKPR 154
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 35.8 bits (81), Expect = 0.036
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKP-PRPEAKSAQPADGWKGERPR 59
R P + PR + + G P PP P+ PA+ P PRPE++ + W+ ++PR
Sbjct: 103 RRPGKPPRRPKGAAGHPSA-PPAAAPAAPAQPPAPRPESQLSDRPQSWE-QKPR 154
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.4 bits (80), Expect = 0.047
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 5 PVRAPA----EKPRGARCSNGFPERDP---PRPGPSRPAEKPPRPEAKSAQPADGWKGER 57
P R PA E PRG S G P P PGP+ + PP PE + + G R
Sbjct: 217 PARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAH-SPAPPAPELREGRAPGSTAGRR 275
Query: 58 PRSEE 62
PR E
Sbjct: 276 PRPRE 280
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.4 bits (80), Expect = 0.047
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 5 PVRAPA----EKPRGARCSNGFPERDP---PRPGPSRPAEKPPRPEAKSAQPADGWKGER 57
P R PA E PRG S G P P PGP+ + PP PE + + G R
Sbjct: 217 PARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAH-SPAPPAPELREGRAPGSTAGRR 275
Query: 58 PRSEE 62
PR E
Sbjct: 276 PRPRE 280
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.4 bits (80), Expect = 0.047
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 5 PVRAPA----EKPRGARCSNGFPERDP---PRPGPSRPAEKPPRPEAKSAQPADGWKGER 57
P R PA E PRG S G P P PGP+ + PP PE + + G R
Sbjct: 217 PARPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAH-SPAPPAPELREGRAPGSTAGRR 275
Query: 58 PRSEE 62
PR E
Sbjct: 276 PRPRE 280
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 35.0 bits (79), Expect = 0.061
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 23 PERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEEDNELNLPNLAAAYSSIL 79
P PP P P P PP P AK + P + + + PR +E NE +P A+A S+ L
Sbjct: 808 PPTPPPPPPPPPPPPPPPLPVAKDSGP-ETLEKDLPR-KEGNEKRIPKSASAPSAHL 862
>gi|169171704 PREDICTED: similar to hCG1770601 [Homo sapiens]
Length = 222
Score = 34.7 bits (78), Expect = 0.080
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 19 SNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
S F R+PPR GPS E+ PRP A + PA
Sbjct: 118 SGVFQYREPPRCGPSEVLERAPRPPAPATLPA 149
>gi|169171845 PREDICTED: similar to hCG1770601 [Homo sapiens]
Length = 222
Score = 34.7 bits (78), Expect = 0.080
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 19 SNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
S F R+PPR GPS E+ PRP A + PA
Sbjct: 118 SGVFQYREPPRCGPSEVLERAPRPPAPATLPA 149
>gi|169171183 PREDICTED: similar to hCG1770601 [Homo sapiens]
Length = 222
Score = 34.7 bits (78), Expect = 0.080
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 19 SNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
S F R+PPR GPS E+ PRP A + PA
Sbjct: 118 SGVFQYREPPRCGPSEVLERAPRPPAPATLPA 149
>gi|239508957 PREDICTED: similar to hCG1770601 [Homo sapiens]
Length = 222
Score = 34.7 bits (78), Expect = 0.080
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 19 SNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
S F R+PPR GPS E+ PRP A + PA
Sbjct: 118 SGVFQYREPPRCGPSEVLERAPRPPAPATLPA 149
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.7 bits (78), Expect = 0.080
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 5 PVRAPA--------EKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGE 56
P +APA +K R G P P+ P+ PA PP P+ A P+ W
Sbjct: 905 PKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPT 964
Query: 57 RP 58
P
Sbjct: 965 PP 966
Score = 32.7 bits (73), Expect = 0.30
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
KG PA P + S G P PP+ P+ PA PP P+ PA
Sbjct: 1307 KGAPTPPAATPPSPKGSPGTP---PPKGAPTPPAVTPPSPKGTPTLPA 1351
Score = 29.6 bits (65), Expect = 2.6
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
KG PA P + P PP+ P+ PA PP P+ A P+
Sbjct: 1146 KGAPTTPAATPPSPKGGLATP---PPKGAPTTPAATPPSPKGGLATPS 1190
Score = 29.3 bits (64), Expect = 3.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQP 49
KG PA P + P PP+ P+ PA PP P+ A P
Sbjct: 1123 KGAPTTPAATPPSPKGGLATP---PPKGAPTTPAATPPSPKGGLATP 1166
Score = 29.3 bits (64), Expect = 3.4
Identities = 16/57 (28%), Positives = 20/57 (35%)
Query: 21 GFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEEDNELNLPNLAAAYSS 77
G P PP+ P+ PA PP P+ P P + P L A S
Sbjct: 1299 GGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPS 1355
Score = 28.5 bits (62), Expect = 5.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPA 50
KG PA P + G P P+ P+ PA PP P+ A P+
Sbjct: 937 KGAPTPPAATPPSPK---GGPATPSPKWAPTPPAATPPSPKGGPATPS 981
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQP 49
KG PA P + G P PP+ P+ PA PP + A P
Sbjct: 1238 KGAPTTPAATPPSPK---GGPATPPPKGAPTPPAATPPSLKGGLATP 1281
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 9 PAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQ---PADGWKGERPRS 60
PA +PRGA P P PS P PP P +AQ PA W + PRS
Sbjct: 98 PALQPRGAPAVPAAPSPGPLPARPSSPPPSPPSPPVPTAQSSLPAP-WPPQGPRS 151
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.9 bits (76), Expect = 0.14
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 5 PVRAPAEKPRGARCSNGFPERDP-PRPGPSRPA--EKPPRPEAKSAQPADGWKGERPRSE 61
P APA P A + G P P P PA P P A +A PA G K E P+
Sbjct: 291 PTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV 350
Query: 62 EDNELNLPNLAAAY--SSILSSLGENPQRQGLLKTP 95
AA +S +S+ P QG L +P
Sbjct: 351 VQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSP 386
Score = 30.8 bits (68), Expect = 1.2
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 2 EKGPVRAPAEKPRG-ARCSNGFPERDPPRPGPSRP--AEKPPRPEAKSAQPADGWKG 55
E P AP P G AR G P+R P P P RP P P AK P +G G
Sbjct: 80 EGAPGAAPEPPPAGRARPGGGGPQRPGP-PSPRRPLVPAGPAPPAAKLRPPPEGSAG 135
>gi|14249488 zinc finger and SCAN domain containing 10 [Homo
sapiens]
Length = 725
Score = 33.9 bits (76), Expect = 0.14
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 11 EKPRGARCSNGFPERDPPRPGPS--RPAEKPPRPEAKSAQPADGWKGERPRSEE 62
EK ++ + P+++ P PS P+++PPRP+ ++AQPA+ + P S +
Sbjct: 96 EKGCASQVPSHSPKKELPAEEPSVLGPSDEPPRPQPRAAQPAEPGQWRLPPSSK 149
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 33.5 bits (75), Expect = 0.18
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 6 VRAPAEKPRGARCSNGFPERDPPRPGPSRPAEK--PP----RPEAKSAQPADGWKGERPR 59
V A P G R G P P + G +R + + PP R +A + PADG +G RP
Sbjct: 103 VEAGGTSPAGERRGRGIPA--PAKLGGARRSRRAQPPITQERGDAWATAPADGSRGSRPL 160
Query: 60 SE-EDNELNLPNLAAAY-------SSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQE 111
++ E+ P + S+ + G++ Q ++ +S + TK Y
Sbjct: 161 AKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDSAHNQAMVHWSGHNSSVILILTKLYDF 220
Query: 112 TISDVLNDAIF 122
+ V +++
Sbjct: 221 NLGSVTESSLW 231
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 5 PVRAPAEKPRGARCSNGFPE----RDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
P A + P+ A S G P R PPRP P+ A +PP P A A PA +G R
Sbjct: 289 PAAASPDLPQPAERSRGEPRPAEPRAPPRPPPA--ARRPPPPPAPGA-PARPLRGRRSHG 345
Query: 61 EEDNELNLPNLAAA 74
+P + A
Sbjct: 346 PAARPRAVPTTSLA 359
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 4 GPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERP 58
GP R+P PR RPG S PA K PRP S + D KGE P
Sbjct: 330 GPQRSPGTGPRWTAPLPRPAPLPAKRPGDS-PASKRPRPGGVSPEARDPPKGENP 383
>gi|71043876 undifferentiated embryonic cell transcription factor
1 [Homo sapiens]
Length = 341
Score = 33.1 bits (74), Expect = 0.23
Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 23 PERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEED-NELNLPNLAAAYSSILSS 81
P R PP P+ P+ P PE ++ A G RP S EL LP + S
Sbjct: 5 PRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQRTPWS 64
Query: 82 LGENPQRQGLLKTP--WRA 98
E G L P WRA
Sbjct: 65 ARETELLLGTLLQPAVWRA 83
>gi|133908641 myosin binding protein C, fast type [Homo sapiens]
Length = 1141
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 5 PVRAPAEK--PRGARCSNGFPERDPPRPGPSR-PAEKPPRPEAKSAQPADGWKGERPRS 60
P PA K P+G G P+ PP+ P+ P E PP ++ +A+ G ++P S
Sbjct: 2 PEAKPAAKKAPKGKDAPKGAPKEAPPKEAPAEAPKEAPPEDQSPTAEEPTGVFLKKPDS 60
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 33.1 bits (74), Expect = 0.23
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEEDNE 65
R+P KP+G G + PP P P +P PP+ K P K + P + DN+
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPP-PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNK 169
Score = 31.2 bits (69), Expect = 0.89
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
+GP +P+G G P+ PP+ G ++P + PP P P G K PRS
Sbjct: 58 QGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNKP-QGPPPPGKPQGPPPQGDKSRSPRS 113
Score = 30.8 bits (68), Expect = 1.2
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPR---------PGPSRPAEKPPRPEAKSAQPADGW 53
+GP K R +R G P+ PP+ P P +P PP+ K P
Sbjct: 160 QGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 219
Query: 54 KGERPRSEEDNE 65
K + P + DN+
Sbjct: 220 KPQGPPPQGDNK 231
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPR 59
+GP K R +R G P+ PP+ G ++P PP P P G G +P+
Sbjct: 284 QGPPPQGGSKSRSSRSPPGKPQGPPPQ-GGNQPQGPPPPPGKPQGPPPQG--GNKPQ 337
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPR 59
+GP K + AR G P+ PP+ G ++P PP P P G G +P+
Sbjct: 222 QGPPPQGDNKSQSARSPPGKPQGPPPQ-GGNQPQGPPPPPGKPQGPPPQG--GNKPQ 275
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERP 58
R+P KP+G G + PP P P +P PP+ K P K + P
Sbjct: 236 RSPPGKPQGPPPQGGNQPQGPP-PPPGKPQGPPPQGGNKPQGPPPPGKPQGP 286
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
+GP +P+G G P+ PP+ G ++P PP + + P G K RS
Sbjct: 243 QGPPPQGGNQPQGPPPPPGKPQGPPPQGG-NKPQGPPPPGKPQGPPPQGGSKSRSSRS 299
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERP 58
R+P KP+G G + PP P P +P PP+ K P K + P
Sbjct: 298 RSPPGKPQGPPPQGGNQPQGPP-PPPGKPQGPPPQGGNKPQGPPPPGKPQGP 348
Score = 29.3 bits (64), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 3 KGPVRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRS 60
+GP +P+G G P+ PP+ G ++P PP + + P G K RS
Sbjct: 305 QGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNKPQGPPPPGKPQGPPPQGGSKSRSARS 361
Score = 28.9 bits (63), Expect = 4.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 5 PVRAPAE---KPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPR 59
P AP + KP+G G P+ PP+ G ++P PP P P G G +P+
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQ-GGNQPQGPPPPPGKPQGPPPQG--GNKPQ 90
Score = 28.5 bits (62), Expect = 5.8
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 9 PAEKPRGARCSNGFPERDPPRPGPSRPAEKPPR--PEAKSAQPADGWKGERPRSEEDNEL 66
P KP+G G + PP PG +P PP+ +++SA+ G P+ E +N
Sbjct: 321 PPGKPQGPPPQGGNKPQGPPPPG--KPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQ 378
Query: 67 NLPNLAAAYSSILSSLGENPQR 88
P A G NPQ+
Sbjct: 379 GPPPPA----------GGNPQQ 390
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 7 RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQ----PADGWKGERP 58
R+P KP+G G + PP P P ++P P A Q P G + RP
Sbjct: 360 RSPPGKPQGPPQQEGNNPQGPPPPAGGNP-QQPQAPPAGQPQGPPRPPQGGRPSRP 414
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 33.1 bits (74), Expect = 0.23
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 6 VRAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERPRSEEDNE 65
V AP+ +P AR P P P P PP P A P + K R + ++
Sbjct: 883 VTAPSLQPVQAR--GAVPTATIIEPPPPPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSK 940
Query: 66 LNLPNLAAAYSSILSSLGE 84
+P+L + SI L E
Sbjct: 941 TKMPSLVKKWQSIQRELDE 959
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,622,733
Number of Sequences: 37866
Number of extensions: 582643
Number of successful extensions: 6168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 5266
Number of HSP's gapped (non-prelim): 1010
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.