Guide to the Human Genome
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Name: FANCA Sequence: fasta or formatted (297aa) NCBI GI: 66879666
Description:

Fanconi anemia, complementation group A isoform b

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [1455aa] Fanconi anemia, complementation group A isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         27           2
 C cysteine            3.0          9           2
 D aspartate           4.0         12           1
 E glutamate           6.7         20           2
 F phenylalanine       3.0          9           1
 G glycine             4.7         14           2
 H histidine           3.4         10           1
 I isoleucine          2.7          8           1
 K lysine              4.4         13           2
 L leucine            13.8         41           3
 M methionine          3.0          9           1
 N asparagine          2.0          6           1
 P proline             3.4         10           1
 Q glutamine           6.4         19           1
 R arginine            6.1         18           3
 S serine             11.4         34           3
 T threonine           2.0          6           1
 V valine              8.1         24           1
 W tryptophan          1.7          5           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fanconi anemia, complementation group A isoform b [H... 
FANCA                 1.000   Fanconi anemia, complementation group A isoform a [H...
KRT73                 0.011   keratin 73 
KRT72                 0.009   keratin 72 isoform 1 
KRT72                 0.009   keratin 72 isoform 2 
KRT72                 0.009   keratin 72 isoform 1 
APC2                  0.009   adenomatosis polyposis coli 2 
TMEM25                0.007   transmembrane protein 25 isoform 2 
TMEM25                0.007   transmembrane protein 25 isoform 2 
TMEM25                0.007   transmembrane protein 25 isoform 5 
LRP2                  0.007   low density lipoprotein-related protein 2 
CCDC88B               0.007   coiled-coil domain containing 88 
TRIM39                0.007   tripartite motif-containing 39 isoform 2 
GRIN3A                0.005   glutamate receptor, ionotropic, N-methyl-D-aspartat...
PLA2R1                0.005   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
PLA2R1                0.005   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
MASTL                 0.005   microtubule associated serine/threonine kinase-like...
COL28A1               0.005   collagen, type XXVIII precursor 
HECTD1                0.005   HECT domain containing 1 
NCKAP1L               0.005   NCK-associated protein 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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