Guide to the Human Genome
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Name: FANCA Sequence: fasta or formatted (1455aa) NCBI GI: 66880553
Description:

Fanconi anemia, complementation group A isoform a

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [297aa] Fanconi anemia, complementation group A isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1        133           3
 C cysteine            2.6         38           2
 D aspartate           4.5         66           2
 E glutamate           6.6         96           2
 F phenylalanine       5.0         73           3
 G glycine             4.1         59           2
 H histidine           3.4         50           1
 I isoleucine          3.1         45           2
 K lysine              3.2         47           2
 L leucine            14.6        212           3
 M methionine          1.9         28           1
 N asparagine          1.5         22           1
 P proline             5.4         78           2
 Q glutamine           5.5         80           2
 R arginine            6.3         92           3
 S serine              9.9        144           3
 T threonine           3.8         55           2
 V valine              6.5         94           2
 W tryptophan          1.5         22           2
 Y tyrosine            1.4         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fanconi anemia, complementation group A isoform a [H... 
FANCA                 0.196   Fanconi anemia, complementation group A isoform b [H...
KIAA0415              0.003   hypothetical protein LOC9907 
LOC100287930          0.003   PREDICTED: hypothetical protein XP_002342772 
LOC100287930          0.003   PREDICTED: similar to Putative uncharacterized prot...
PTPRK                 0.002   protein tyrosine phosphatase, receptor type, K isof...
PTPRK                 0.002   protein tyrosine phosphatase, receptor type, K isofo...
CHRNA10               0.002   cholinergic receptor, nicotinic, alpha 10 
SPTBN1                0.002   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.002   spectrin, beta, non-erythrocytic 1 isoform 1 
NUP160                0.002   nucleoporin 160kDa 
KRT73                 0.002   keratin 73 
CNNM3                 0.002   cyclin M3 isoform 2 
CNNM3                 0.002   cyclin M3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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