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Search of human proteins with 66346713
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346713 mature T-cell proliferation 1 neighbor [Homo
sapiens]
(68 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens] 145 9e-36
gi|4557391 complement component 8, beta polypeptide preproprotei... 34 0.022
gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens] 32 0.14
gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens] 32 0.14
gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens] 31 0.18
gi|124487405 FSHD region gene 2 family, member B [Homo sapiens] 31 0.18
gi|7662036 sparc/osteonectin, cwcv and kazal-like domains proteo... 28 2.0
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 27 2.7
gi|21389623 prominin 2 [Homo sapiens] 27 2.7
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin... 27 3.5
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin... 27 3.5
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin... 27 3.5
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 26 5.9
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 26 5.9
gi|238859649 keratin associated protein 10-8 [Homo sapiens] 26 7.7
gi|4758502 hyaluronan binding protein 2 preproprotein [Homo sapi... 26 7.7
gi|4759164 sparc/osteonectin, cwcv and kazal-like domains proteo... 26 7.7
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 26 7.7
gi|239754122 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 26 7.7
gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo ... 26 7.7
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 26 7.7
gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo ... 26 7.7
>gi|66346713 mature T-cell proliferation 1 neighbor [Homo sapiens]
Length = 68
Score = 145 bits (365), Expect = 9e-36
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MPQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKEEEEN 60
MPQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKEEEEN
Sbjct: 1 MPQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKEEEEN 60
Query: 61 LTRKSASK 68
LTRKSASK
Sbjct: 61 LTRKSASK 68
>gi|4557391 complement component 8, beta polypeptide preproprotein
[Homo sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGF 53
DPCQK+ LQ + + C +E+ C P G V C GF
Sbjct: 77 DPCQKKRYRYAYLLQPSQFHGEPCNFSDKEVEDCVTNRPCGSQVRCEGF 125
>gi|169217518 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 4 KDPCQKQA--CEIQKC-LQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKE 56
KD CQ +A C ++C L N S E+++ C + +GRS C+G K+
Sbjct: 104 KDSCQDRAGNCPEEECSLTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQ 159
>gi|169218236 PREDICTED: FSHD region gene 2-like [Homo sapiens]
Length = 282
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 4 KDPCQKQA--CEIQKC-LQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKE 56
KD CQ +A C ++C L N S E+++ C + +GRS C+G K+
Sbjct: 104 KDSCQDRAGNCPEEECSLTLNKKSRSSTAVHNSEIQETCDAHHRGRSRACTGCSKQ 159
>gi|32261320 PSMC3 interacting protein isoform 1 [Homo sapiens]
Length = 205
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 13 EIQKCLQANSYMESKCQAVIQELRKCCAQYP---KGRSVVCSGFEKEEEENLTRK 64
++Q Q+ YME++ Q IQEL+K CA Y K + EE+E + R+
Sbjct: 99 KVQSLQQSCRYMEAEMQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRE 153
>gi|124487405 FSHD region gene 2 family, member B [Homo sapiens]
Length = 278
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1 MPQKDPCQKQA--CEIQKC-LQANSYMESKCQAVIQELRKCCAQYPKGRSVVCSGFEK 55
M KD CQ A C ++C L N S E+++ C + +GRS C+G K
Sbjct: 100 MSSKDSCQDTAGNCPEKECSLSLNKKSRSSTPVHNSEIQETCDAHHRGRSRACTGRSK 157
>gi|7662036 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan (testican) 2 isoform 2 [Homo sapiens]
Length = 424
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 4 KDPCQKQACEIQKCLQANSYMESKC 28
KDPCQK C K A Y + C
Sbjct: 87 KDPCQKVKCSRHKVCIAQGYQRAMC 111
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYP--KGRSVVCSGFEKEEE 58
C KQ C I CL + KC + KC A P G + C+ ++ +E
Sbjct: 541 CNKQDCPIDGCLSNPCFAGVKCTSYPDGSWKCGACPPGYSGNGIQCTDVDECKE 594
>gi|21389623 prominin 2 [Homo sapiens]
Length = 834
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 30 AVIQELRKCCAQYPKGRSVVCSGF 53
+V+QEL+K AQ P+G + GF
Sbjct: 368 SVVQELKKAVAQQPEGVRTLAEGF 391
>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform f [Homo sapiens]
Length = 85
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 2 PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
P +PC ++ +CL N+Y +C + C
Sbjct: 11 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 47
>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform b [Homo sapiens]
Length = 110
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 2 PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
P +PC ++ +CL N+Y +C + C
Sbjct: 36 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 72
>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
7 isoform d [Homo sapiens]
Length = 97
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 2 PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38
P +PC ++ +CL N+Y +C + C
Sbjct: 23 PDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNC 59
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 5 DPCQKQACEIQKCLQANS--------YMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKE 56
+P +++ EI +C + +ES+ Q +++E + + + + V+ S E+E
Sbjct: 159 EPLEQKLQEITRCKSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEE 218
Query: 57 EEENLTR 63
E++ L R
Sbjct: 219 EQDILQR 225
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 5 DPCQKQACEIQKCLQANS--------YMESKCQAVIQELRKCCAQYPKGRSVVCSGFEKE 56
+P +++ EI +C + +ES+ Q +++E + + + + V+ S E+E
Sbjct: 159 EPLEQKLQEITRCKSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEE 218
Query: 57 EEENLTR 63
E++ L R
Sbjct: 219 EQDILQR 225
>gi|238859649 keratin associated protein 10-8 [Homo sapiens]
Length = 259
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSVVCS 51
PCQ QAC + C ++N C ++ C Q +S C+
Sbjct: 113 PCQ-QACCVPVCCKSNCCKPVCCVSICSGASSPCCQQSSCQSACCT 157
>gi|4758502 hyaluronan binding protein 2 preproprotein [Homo
sapiens]
Length = 560
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 3 QKDPCQKQACEI-QKCLQANSYMESKCQAVI-----QELRKCCAQYPKGR 46
Q DPCQ CE CL S C A Q+++ C P GR
Sbjct: 73 QADPCQPNPCEHGGDCLVHGSTFTCSCLAPFSGNKCQKVQNTCKDNPCGR 122
>gi|4759164 sparc/osteonectin, cwcv and kazal-like domains
proteoglycan 1 precursor [Homo sapiens]
Length = 439
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 2 PQKDPCQKQACEIQKCLQANSYMESKC 28
P KDPC K C K Y + C
Sbjct: 81 PSKDPCLKVKCSPHKVCVTQDYQTALC 107
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 12 CEIQKCLQANSYMESKCQAVIQELRK 37
CE+ +C+Q + ME++ ++Q+L K
Sbjct: 156 CELCQCIQRSEDMENEIDQLLQKLEK 181
>gi|239754122 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 38 CCAQYPKGRSVVCSGFEKEEEENLTRKSASK 68
C P G+ + G E EEN+T+ A K
Sbjct: 81 CVVSEPMGQDGITQGKSTESEENMTQDQALK 111
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 12 CEIQKCLQANSYMESKCQAVIQELRK 37
CE+ +C+Q + ME++ ++Q+L K
Sbjct: 156 CELCQCIQRSEDMENEIDQLLQKLEK 181
>gi|239748628 PREDICTED: hypothetical protein XP_002346741 [Homo
sapiens]
Length = 115
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 38 CCAQYPKGRSVVCSGFEKEEEENLTRKSASK 68
C P G+ + G E EEN+T+ A K
Sbjct: 81 CVVSEPMGQDGITQGKSTESEENMTQDQALK 111
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 12 CEIQKCLQANSYMESKCQAVIQELRK 37
CE+ +C+Q + ME++ ++Q+L K
Sbjct: 156 CELCQCIQRSEDMENEIDQLLQKLEK 181
>gi|239742655 PREDICTED: hypothetical protein XP_002342590 [Homo
sapiens]
Length = 115
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 38 CCAQYPKGRSVVCSGFEKEEEENLTRKSASK 68
C P G+ + G E EEN+T+ A K
Sbjct: 81 CVVSEPMGQDGITQGKSTESEENMTQDQALK 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.125 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,837,149
Number of Sequences: 37866
Number of extensions: 101024
Number of successful extensions: 409
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 25
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.