Search of human proteins with 66346670

Search of human proteins with 66346670

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo
sapiens]
         (354 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo sa...   712   0.0  
gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo sa...   617   e-177
gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]        572   e-163
gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]         572   e-163
gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo sa...   315   3e-86
gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo sa...   314   9e-86
gi|156627565 Rh-associated glycoprotein [Homo sapiens]                196   3e-50
gi|7706683 Rh family, C glycoprotein [Homo sapiens]                   184   1e-46
gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]        171   1e-42
gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Hom...    31   1.5  
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom...    31   1.5  
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo...    31   1.5  
gi|225703102 major facilitator superfamily domain containing 10 ...    29   5.6  
gi|76563908 hypothetical protein LOC169436 [Homo sapiens]              29   5.6  
gi|225703104 major facilitator superfamily domain containing 10 ...    29   5.6  
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]         29   7.3  
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]          29   7.3  
gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo...    29   7.3  
gi|153791662 coiled-coil domain containing 71 [Homo sapiens]           29   7.3  
gi|193083183 synaptopodin 2 isoform a [Homo sapiens]                   28   9.5  

>gi|66346670 Rhesus blood group, CcEe antigens isoform 2 [Homo
           sapiens]
          Length = 354

 Score =  712 bits (1837), Expect = 0.0
 Identities = 354/354 (100%), Positives = 354/354 (100%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180

Query: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240
           LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN
Sbjct: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240

Query: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300
           TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV
Sbjct: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300

Query: 301 AGLISIGGAKCLPDWLPGPPQHWGTQLGHRDSSHVWSPDRFAPKSQNMESTSCG 354
           AGLISIGGAKCLPDWLPGPPQHWGTQLGHRDSSHVWSPDRFAPKSQNMESTSCG
Sbjct: 301 AGLISIGGAKCLPDWLPGPPQHWGTQLGHRDSSHVWSPDRFAPKSQNMESTSCG 354


>gi|66346664 Rhesus blood group, CcEe antigens isoform 1 [Homo
           sapiens]
          Length = 417

 Score =  617 bits (1592), Expect = e-177
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180

Query: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240
           LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN
Sbjct: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240

Query: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300
           TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV
Sbjct: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300

Query: 301 AGLISIGGAKCLP 313
           AGLISIGGAKCLP
Sbjct: 301 AGLISIGGAKCLP 313


>gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]
          Length = 321

 Score =  572 bits (1473), Expect = e-163
 Identities = 290/313 (92%), Positives = 300/313 (95%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1   MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180
           +SVLIS  AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFNTDYHMN+ H YVFAAYFG
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNTDYHMNMMHIYVFAAYFG 180

Query: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240
           L+VAWCLPKPLP+GTED DQ ATIPSLSAMLGALFLWMFWPS NSALLRSPI+RKNA+FN
Sbjct: 181 LSVAWCLPKPLPEGTEDKDQTATIPSLSAMLGALFLWMFWPSFNSALLRSPIERKNAVFN 240

Query: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300
           TYYA+AVSVVTAISGSSLAHPQ KIS TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV
Sbjct: 241 TYYAVAVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300

Query: 301 AGLISIGGAKCLP 313
           AGLIS+GGAK LP
Sbjct: 301 AGLISVGGAKYLP 313


>gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]
          Length = 417

 Score =  572 bits (1473), Expect = e-163
 Identities = 290/313 (92%), Positives = 300/313 (95%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPL ALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAA+
Sbjct: 1   MSSKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAI 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTS+FRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFP GKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSSFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPSGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFG 180
           +SVLIS  AVLGKVNLAQLVVMVLVEVTALG LRMVISNIFNTDYHMN+ H YVFAAYFG
Sbjct: 121 LSVLISVDAVLGKVNLAQLVVMVLVEVTALGNLRMVISNIFNTDYHMNMMHIYVFAAYFG 180

Query: 181 LTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFN 240
           L+VAWCLPKPLP+GTED DQ ATIPSLSAMLGALFLWMFWPS NSALLRSPI+RKNA+FN
Sbjct: 181 LSVAWCLPKPLPEGTEDKDQTATIPSLSAMLGALFLWMFWPSFNSALLRSPIERKNAVFN 240

Query: 241 TYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300
           TYYA+AVSVVTAISGSSLAHPQ KIS TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV
Sbjct: 241 TYYAVAVSVVTAISGSSLAHPQGKISKTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300

Query: 301 AGLISIGGAKCLP 313
           AGLIS+GGAK LP
Sbjct: 301 AGLISVGGAKYLP 313


>gi|66346668 Rhesus blood group, CcEe antigens isoform 4 [Homo
           sapiens]
          Length = 267

 Score =  315 bits (808), Expect = 3e-86
 Identities = 164/166 (98%), Positives = 164/166 (98%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYH 166
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT  H
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTYVH 166



 Score =  106 bits (265), Expect = 3e-23
 Identities = 64/105 (60%), Positives = 67/105 (63%), Gaps = 18/105 (17%)

Query: 268 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPDWLPGPPQHWGTQL 327
           TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLP             +
Sbjct: 163 TYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGLISIGGAKCLPVCCNRVLGIHHISV 222

Query: 328 GHRDSS-----------------HVWSPD-RFAPKSQNMESTSCG 354
            H   S                  VW+ +  FAPKSQNMESTSCG
Sbjct: 223 MHSIFSLLGLLGEITYIVLLVLHTVWNGNGMFAPKSQNMESTSCG 267


>gi|66346666 Rhesus blood group, CcEe antigens isoform 3 [Homo
           sapiens]
          Length = 266

 Score =  314 bits (804), Expect = 9e-86
 Identities = 166/183 (90%), Positives = 170/183 (92%), Gaps = 2/183 (1%)

Query: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60
           MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL
Sbjct: 1   MSSKYPRSVRRCLPLCALTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAAL 60

Query: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120
           GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA
Sbjct: 61  GLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSA 120

Query: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNT--DYHMNLRHFYVFAAY 178
           MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFN   +  + + H  V  + 
Sbjct: 121 MSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNVCCNRVLGIHHISVMHSI 180

Query: 179 FGL 181
           F L
Sbjct: 181 FSL 183


>gi|156627565 Rh-associated glycoprotein [Homo sapiens]
          Length = 409

 Score =  196 bits (497), Expect = 3e-50
 Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 12/315 (3%)

Query: 9   VRRCLPLCALTLEAALILLFYFFTHY--DASLEDQKGLVASYQVG---------QDLTVM 57
           +R   PL A+ LE A+I+LF  F  Y  D ++ +Q  +     +G         QD+ VM
Sbjct: 1   MRFTFPLMAIVLEIAMIVLFGLFVEYETDQTVLEQLNITKPTDMGIFFELYPLFQDVHVM 60

Query: 58  AALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLAT 117
             +G GFL +  +++ +SSV  NL + ALG+QW  ++ G L Q    K  I + ++  A 
Sbjct: 61  IFVGFGFLMTFLKKYGFSSVGINLLVAALGLQWGTIVQGIL-QSQGQKFNIGIKNMINAD 119

Query: 118 MSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAA 177
            SA +VLIS GAVLGK +  Q+++M ++E+        ++S IF           + F A
Sbjct: 120 FSAATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSEIFKASDIGASMTIHAFGA 179

Query: 178 YFGLTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNA 237
           YFGL VA  L +   +   +N++ A    L AM+G LFLWMFWPS NSA+     ++  A
Sbjct: 180 YFGLAVAGILYRSGLRKGHENEESAYYSDLFAMIGTLFLWMFWPSFNSAIAEPGDKQCRA 239

Query: 238 MFNTYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVL 297
           + NTY++LA  V+TA + SSL   + K++M ++ +A LAGGVAVGT   +   P+ +M++
Sbjct: 240 IVNTYFSLAACVLTAFAFSSLVEHRGKLNMVHIQNATLAGGVAVGTCADMAIHPFGSMII 299

Query: 298 GLVAGLISIGGAKCL 312
           G +AG++S+ G K L
Sbjct: 300 GSIAGMVSVLGYKFL 314


>gi|7706683 Rh family, C glycoprotein [Homo sapiens]
          Length = 479

 Score =  184 bits (466), Expect = 1e-46
 Identities = 108/323 (33%), Positives = 171/323 (52%), Gaps = 14/323 (4%)

Query: 8   SVRRCLPLCALTLEAALILLFYFFTHYD-------------ASLEDQKG-LVASYQVGQD 53
           ++R  LPL  L L+  +++LF  F  YD              +L D +      Y   QD
Sbjct: 6   NLRWRLPLTCLLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQD 65

Query: 54  LTVMAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSI 113
           + VM  +G GFL +  +R+ +S+V FN  + A G+QWA+L+ G+        +V+ + ++
Sbjct: 66  VHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENL 125

Query: 114 RLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFY 173
             A     SV ++ GAVLGKV+  QL++M   +VT       ++ N+            +
Sbjct: 126 INADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGSMTIH 185

Query: 174 VFAAYFGLTVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQ 233
            F AYFGLTV   L +   + +++         L AM+G LFLWM+WPS NSA+      
Sbjct: 186 TFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYHGDS 245

Query: 234 RKNAMFNTYYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWL 293
           +  A  NTY +LA  V+T+++ SS  H + K+ M ++ +A LAGGVAVGT+  ++  P+ 
Sbjct: 246 QHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYG 305

Query: 294 AMVLGLVAGLISIGGAKCLPDWL 316
           A+++G V G+IS  G   L  +L
Sbjct: 306 ALIIGFVCGIISTLGFVYLTPFL 328


>gi|224548945 Rhesus blood group, B glycoprotein [Homo sapiens]
          Length = 458

 Score =  171 bits (432), Expect = 1e-42
 Identities = 106/309 (34%), Positives = 158/309 (51%), Gaps = 11/309 (3%)

Query: 13  LPLCALTLEAALILLFYFFTHY----DASLEDQKG-------LVASYQVGQDLTVMAALG 61
           LPL  L L+ A  +LF  F  Y    DA+L  +             Y   QD+  M  +G
Sbjct: 15  LPLLCLFLQGATAVLFAVFVRYNHKTDAALWHRSNHSNADNEFYFRYPSFQDVHAMVFVG 74

Query: 62  LGFLTSNFRRHSWSSVAFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAM 121
            GFL    +R+ +SSV F   + A  +QW+ L+ GFL  F  G + + + S+  A   A 
Sbjct: 75  FGFLMVFLQRYGFSSVGFTFLLAAFALQWSTLVQGFLHSFHGGHIHVGVESMINADFCAG 134

Query: 122 SVLISAGAVLGKVNLAQLVVMVLVEVTALGTLRMVISNIFNTDYHMNLRHFYVFAAYFGL 181
           +VLIS GAVLGK    QL++M L+EV   G    V+ ++            + F AYFGL
Sbjct: 135 AVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLHLLGVRDAGGSMTIHTFGAYFGL 194

Query: 182 TVAWCLPKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFNT 241
            ++  L +P  + ++          L AM+G +FLW+FWPS N+AL      +     NT
Sbjct: 195 VLSRVLYRPQLEKSKHRQGSVYHSDLFAMIGTIFLWIFWPSFNAALTALGAGQHRTALNT 254

Query: 242 YYALAVSVVTAISGSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVA 301
           YY+LA S +   + S+L     ++ M ++ +A LAGGV VGTS  ++ +P+ A+  G +A
Sbjct: 255 YYSLAASTLGTFALSALVGEDGRLDMVHIQNAALAGGVVVGTSSEMMLTPFGALAAGFLA 314

Query: 302 GLISIGGAK 310
           G +S  G K
Sbjct: 315 GTVSTLGYK 323


>gi|197304729 cytochrome b-561 domain containing 1 isoform 3 [Homo
          sapiens]
          Length = 172

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13 LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
          L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 4  LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 55

Query: 67 SNFRRH------SWSSVAFNLFMLALGVQ 89
          S+  R       SW S    L +LA  VQ
Sbjct: 56 SSRTRSELPHLVSWHSWVGALTLLATAVQ 84


>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 251

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13  LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
           L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 83  LEFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 134

Query: 67  SNFRRH------SWSSVAFNLFMLALGVQ 89
           S+  R       SW S    L +LA  VQ
Sbjct: 135 SSRTRSELPHLVSWHSWVGALTLLATAVQ 163


>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 229

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 20/89 (22%)

Query: 13  LPLCALTLEAALIL-----LFYFFTHYDASLEDQKGLVASYQVGQDLTVM-AALGLGFLT 66
           L  C    EA L+      LF+F +        +K  +  +  GQ L ++ AALGLGF+ 
Sbjct: 61  LAFCLCMAEAILLFSPEHSLFFFCS--------RKARIRLHWAGQTLAILCAALGLGFII 112

Query: 67  SNFRRH------SWSSVAFNLFMLALGVQ 89
           S+  R       SW S    L +LA  VQ
Sbjct: 113 SSRTRSELPHLVSWHSWVGALTLLATAVQ 141


>gi|225703102 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 247 VSVVTAIS---GSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGL 303
           VS+ TAI    GS LA  Q    +    S     G  +G S  L  +PW A++    + L
Sbjct: 157 VSLSTAIVADLGSPLARSQGMAVIGVAFSLGFTLGPMLGASLPLEMAPWFALLFA-ASDL 215

Query: 304 ISIGGAKC-LPDWLPGPPQHWGTQLGHRDSSHVWSP 338
           + I    C LP+ LP   +     LG RD++ + SP
Sbjct: 216 LFIF---CFLPETLPLEKRAPSIALGFRDAADLLSP 248


>gi|76563908 hypothetical protein LOC169436 [Homo sapiens]
          Length = 680

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 86  LGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAG-------AVLGKV---N 135
           LG+ WA+LLDG +    P + V  L S  LAT  A   +  A        ++LG +    
Sbjct: 482 LGLLWALLLDGIIVNKAPLEKVPDLISQVLATYPADGEMAEASCGVFWLLSLLGCIKEQQ 541

Query: 136 LAQLVVMVLVEVTALGTLRMVISNIF 161
             Q+V ++L  +       ++++N +
Sbjct: 542 FEQVVALLLQSIRLCQDRALLVNNAY 567


>gi|225703104 major facilitator superfamily domain containing 10
           [Homo sapiens]
          Length = 455

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 247 VSVVTAIS---GSSLAHPQRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLVAGL 303
           VS+ TAI    GS LA  Q    +    S     G  +G S  L  +PW A++    + L
Sbjct: 157 VSLSTAIVADLGSPLARSQGMAVIGVAFSLGFTLGPMLGASLPLEMAPWFALLFA-ASDL 215

Query: 304 ISIGGAKC-LPDWLPGPPQHWGTQLGHRDSSHVWSP 338
           + I    C LP+ LP   +     LG RD++ + SP
Sbjct: 216 LFIF---CFLPETLPLEKRAPSIALGFRDAADLLSP 248


>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
          Length = 973

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 92  ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
           ILL G LSQ PPG+V   L  I       L T + +S +++AG   G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717


>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
          Length = 1070

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 92  ILLDGFLSQFPPGKVVITLFSIR------LATMSAMSVLISAGAVLG 132
           ILL G LSQ PPG+V   L  I       L T + +S +++AG   G
Sbjct: 671 ILLTGDLSQEPPGRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRG 717


>gi|50593008 transmembrane BAX inhibitor motif containing 1 [Homo
           sapiens]
          Length = 311

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 18  LTLEAALILLFYFFTHYDASLEDQKGLVASYQVGQDLTVMAALGLGFLTSNFRRHSWSSV 77
           L +  A+I +F F     A +      VA Y V   + V+  L L       RR  W+ +
Sbjct: 110 LLITVAIIAIFTFVEPVSAFVRRN---VAVYYVSYAVFVVTYLILACCQGPRRRFPWNII 166

Query: 78  AFNLFMLALGVQWAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLA 137
              LF  A+G      + G +S     K VI    I +   + +S+ ++      KV+  
Sbjct: 167 LLTLFTFAMG-----FMTGTISSMYQTKAVI----IAMIITAVVSISVTIFCFQTKVDFT 217

Query: 138 QLVVMVLVEVTALGTLRMVISNI--FNTDYHMNLRHFYVFAAYFGLTVAW 185
               +  V    L    +V S +  F   Y +++ +  + A  F L +A+
Sbjct: 218 SCTGLFCVLGIVLLVTGIVTSIVLYFQYVYWLHMLYAALGAICFTLFLAY 267


>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
          Length = 467

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 202 ATIPSLSAMLGALFLWMFWPSVNSALLRSPIQRKNAMFNTYYALAVSVVTAISGSSLAHP 261
           AT P  SA   A+ L    P+  + LL  P+  + A  +T  ALA    T +  SSL   
Sbjct: 95  ATSPPASAPRTAMRL----PAGRATLLPMPLSGRLAKASTP-ALAKHATTNLLLSSLKQS 149

Query: 262 QRKISMTYVHSAVLAGGVAVGTSCHLIPSPWLAMVLGLV 300
                     SA  A G AVG   HL P  + AM L +V
Sbjct: 150 ----------SASHARGAAVGFPTHLYPGVYPAMRLSVV 178


>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
          Length = 1261

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 65/210 (30%)

Query: 188  PKPLPKGTEDNDQRATIPSLSAMLGALFLWMFWPSVNSALLRSPIQ-------RKNAMFN 240
            P+P+   +  N Q +++ S+ A         F+   +S +  SP+        ++ +  +
Sbjct: 1008 PRPVNAASPTNVQASSVYSVPAYTSPP---SFFAEASSPVSASPVPVGIPTSPKQESASS 1064

Query: 241  TYY--------ALAVSVVTAISGSSLAHPQRKI-----------SMTYVHSAVLAGGVAV 281
            +Y+        A    V    SG SL+ P R +             TY +S+    G+  
Sbjct: 1065 SYFVAPRPKFSAKKSGVTIQESGRSLSLPGRSVPPPISTSPWVYQPTYSYSSKPTDGLE- 1123

Query: 282  GTSCHLIPSPWLAMV---LGLV--------------AGLISIGGAKCLPDWLPGPPQHWG 324
                +  P+PW A     LGLV              A ++S    K LP    GPP+ W 
Sbjct: 1124 --KANKRPTPWEAAAKSPLGLVDDAFQPRNIQESIVANVVSAARRKVLP----GPPEDWN 1177

Query: 325  TQLGHRDSSHVWSPDRFAPKSQNMESTSCG 354
             +L             + P++Q     SCG
Sbjct: 1178 ERLS------------YIPQTQKAYMGSCG 1195


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,798,525
Number of Sequences: 37866
Number of extensions: 541420
Number of successful extensions: 1590
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 22
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.