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Search of human proteins with 62739181
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62739181 rhotekin isoform c [Homo sapiens]
(513 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62739181 rhotekin isoform c [Homo sapiens] 1052 0.0
gi|62739179 rhotekin isoform a [Homo sapiens] 1052 0.0
gi|19526471 rhotekin isoform b [Homo sapiens] 1052 0.0
gi|26190614 rhotekin 2 [Homo sapiens] 376 e-104
gi|47132519 Ras association and pleckstrin homology domains 1 is... 40 0.004
gi|24432056 hypothetical protein LOC144717 [Homo sapiens] 40 0.005
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.025
gi|11386183 WAS protein family, member 2 [Homo sapiens] 38 0.025
gi|189181750 human immunodeficiency virus type I enhancer bindin... 37 0.043
gi|116089331 human immunodeficiency virus type I enhancer bindin... 37 0.043
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.096
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.096
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.096
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 36 0.096
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 35 0.16
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 35 0.16
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.21
gi|153792074 proline rich 12 [Homo sapiens] 35 0.21
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 34 0.28
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 34 0.28
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 34 0.28
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 34 0.28
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens] 34 0.28
gi|18959210 WIRE protein [Homo sapiens] 34 0.28
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 34 0.36
gi|32483397 dopamine receptor D4 [Homo sapiens] 33 0.48
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 33 0.62
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 33 0.62
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 33 0.62
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 33 0.62
>gi|62739181 rhotekin isoform c [Homo sapiens]
Length = 513
Score = 1052 bits (2721), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP
Sbjct: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
Query: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT
Sbjct: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
Query: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR
Sbjct: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
Query: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL
Sbjct: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
Query: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 300
PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT
Sbjct: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 300
Query: 301 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 360
GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA
Sbjct: 301 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 360
Query: 361 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 420
LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ
Sbjct: 361 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 420
Query: 421 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 480
REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP
Sbjct: 421 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 480
Query: 481 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 481 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
>gi|62739179 rhotekin isoform a [Homo sapiens]
Length = 563
Score = 1052 bits (2721), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP
Sbjct: 51 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 110
Query: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT
Sbjct: 111 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 170
Query: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR
Sbjct: 171 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 230
Query: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL
Sbjct: 231 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 290
Query: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 300
PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT
Sbjct: 291 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 350
Query: 301 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 360
GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA
Sbjct: 351 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 410
Query: 361 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 420
LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ
Sbjct: 411 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 470
Query: 421 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 480
REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP
Sbjct: 471 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 530
Query: 481 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 531 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 563
>gi|19526471 rhotekin isoform b [Homo sapiens]
Length = 550
Score = 1052 bits (2721), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP
Sbjct: 38 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 97
Query: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT
Sbjct: 98 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 157
Query: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR
Sbjct: 158 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 217
Query: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL
Sbjct: 218 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 277
Query: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 300
PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT
Sbjct: 278 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 337
Query: 301 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 360
GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA
Sbjct: 338 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 397
Query: 361 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 420
LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ
Sbjct: 398 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 457
Query: 421 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 480
REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP
Sbjct: 458 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 517
Query: 481 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 518 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 550
>gi|26190614 rhotekin 2 [Homo sapiens]
Length = 609
Score = 376 bits (966), Expect = e-104
Identities = 190/448 (42%), Positives = 292/448 (65%), Gaps = 19/448 (4%)
Query: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
MREG KLL+ +Q++Q L A K+L+VCN+R+++Y ELQ+ +E Q+ +T R
Sbjct: 34 MREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTSELQKLEE-QIANQTGRCDVKF-E 91
Query: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
ER+ C+G++ ISD+RIPLMWKD+++F NK R+A+F L ++G ++ DT+++ VD+T
Sbjct: 92 SKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANVFDTDVVNVDKT 151
Query: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
+TDI F++ +F EAGPDF++++E+Y C EE ++T PK+LA KL +S+ +++G+++
Sbjct: 152 ITDICFENVTIFNEAGPDFQIKVEVYSCCT-EESSITNTPKKLAKKLKTSISKATGKKIS 210
Query: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
+ L LL + V G +Y+LLAHTTLTL + +D F+TH+L++ +EE+ WL
Sbjct: 211 SVLQE---EDDEMCLLLSSAVFGVKYNLLAHTTLTLESAEDSFKTHNLSINGNEESSFWL 267
Query: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGE-MQNWAQVHGVLKGTNLFCYRQPEDAD 299
PLYG++CCRL AQP CM + +G L QQ E + +W +++ VL+G L+C+ PE+ +
Sbjct: 268 PLYGNMCCRLVAQPACMAEDAFAGFLNQQQMVEGLISWRRLYCVLRGGKLYCFYSPEEIE 327
Query: 300 TGEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWME 359
EP L + +NKETR+RA + D A R S+ N +T ++RE LQ WME
Sbjct: 328 AKVEPALVVPINKETRIRAMDKD-AKKRIHNFSVINPVPGQAITQIFAVDNREDLQKWME 386
Query: 360 ALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQG-SLYHEMAIEPLDDIAAVTDIL 418
A WQ FFD+SQWK CC+E+MKIE +PRKPP L K+ S+YH+M+I+ + ++TDI+
Sbjct: 387 AFWQHFFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMSIDSPMKLESLTDII 446
Query: 419 TQR----EGARL------ETPPPWLAMF 436
++ G L PPPW +F
Sbjct: 447 QKKIEETNGQFLIGQHEESLPPPWATLF 474
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 40.4 bits (93), Expect = 0.004
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 383 TPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQPAL 442
TP PP L KQ S + PL + +V ++ A PPP QP
Sbjct: 830 TPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVV-----KQIASQFPPPPTPPAMESQPLK 884
Query: 443 PNPC-----SPASVAPAPDW---THPLPWGR----PRTFSLDAVPPDHSPRARSVAPLPP 490
P P SP +V P W + P+P P SL PP SP P PP
Sbjct: 885 PVPANVAPQSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPP 944
Query: 491 QRSPRTRGLCSKGQPRTWLQSP 512
SP S G+ + SP
Sbjct: 945 TASPTPDKSGSPGKKTSKTSSP 966
Score = 29.3 bits (64), Expect = 9.0
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 488
P P AM +PA P P AP P PL + + + PP P APL
Sbjct: 719 PTPGSAMAQLKPAPCAPSLPQFSAPPP----PLKIHQVQHIT-QVAPPTPPPPPPIPAPL 773
Query: 489 PPQRSPR 495
PPQ P+
Sbjct: 774 PPQAPPK 780
Score = 29.3 bits (64), Expect = 9.0
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 25/120 (20%)
Query: 377 EIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTD------ILTQREGARLETPP 430
++ I AP PP L + +PL I A T ++TQ A TP
Sbjct: 751 QVQHITQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQ---AAPPTPT 807
Query: 431 PWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPP 490
P + QPA P AS P T P+P VPP P+ +S PP
Sbjct: 808 PPVPPAKKQPAFP-----ASYIPPSPPTPPVP-----------VPPPTLPKQQSFCAKPP 851
>gi|24432056 hypothetical protein LOC144717 [Homo sapiens]
Length = 249
Score = 40.0 bits (92), Expect = 0.005
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 45/161 (27%)
Query: 343 THTLQTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHE 402
T+ L ES++A++ W++AL + FD Y
Sbjct: 90 TYVLAAESQDAMEGWVKALSRASFD--------------------------------YLR 117
Query: 403 MAIEPLD-DIAAVTD----ILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDW 457
+ + L+ +AAV L Q + L PP + P+LP+ +P P P
Sbjct: 118 LVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRR 177
Query: 458 THPLP--------WGRPRTFSLDAVPPDHSPRARSVAPLPP 490
LP W TF PP PR R+ AP P
Sbjct: 178 PSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGP 218
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.7 bits (86), Expect = 0.025
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 381 IETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQP 440
+ET + PP SL PL+++ ++ Q A L TP + P
Sbjct: 512 LETQSSLAPPSLQTPPASL----TTPPLENLPSLAPPPLQTASAPLTTP------HLETP 561
Query: 441 ALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSP 494
P PC P P+P T P P T S A PP +P A + PL SP
Sbjct: 562 PCPAPC-PLQAPPSPLTTPP-----PETPSSIATPPPQAPPALASPPLQGLPSP 609
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 37.7 bits (86), Expect = 0.025
Identities = 22/66 (33%), Positives = 26/66 (39%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 488
PPP + P P P SP S P PD+ P P P +PP + AP
Sbjct: 333 PPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPP 392
Query: 489 PPQRSP 494
PP P
Sbjct: 393 PPPPPP 398
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 37.0 bits (84), Expect = 0.043
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 420 QREGARLETPPPWLAMFTDQPALP----NPCSPASVAPAP--------DWTHPLPWGR-P 466
+R G PP W T PA P +PC+P P P W+ L R P
Sbjct: 2278 ERTGGGPGRPPDWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGRRAAQSWSPRLESPRAP 2337
Query: 467 RTFSLDAVPP-DHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSP 512
A PP D S +A + RTR L G+PRT SP
Sbjct: 2338 TNPEPSATPPLDRSSSVGCLAEASARFPARTRNL--SGEPRTRQDSP 2382
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 37.0 bits (84), Expect = 0.043
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 420 QREGARLETPPPWLAMFTDQPALP----NPCSPASVAPAP--------DWTHPLPWGR-P 466
+R G PP W T PA P +PC+P P P W+ L R P
Sbjct: 2279 ERTGGGPGRPPDWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGRRAAQSWSPRLESPRAP 2338
Query: 467 RTFSLDAVPP-DHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSP 512
A PP D S +A + RTR L G+PRT SP
Sbjct: 2339 TNPEPSATPPLDRSSSVGCLAEASARFPARTRNL--SGEPRTRQDSP 2383
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.096
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 439 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 496
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.096
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 439 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 496
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.096
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 439 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 496
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.8 bits (81), Expect = 0.096
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 407 PLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPD-WTHPLPW-- 463
PL A D + E + PPP+LA + P P P S P + PLPW
Sbjct: 809 PLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPP 868
Query: 464 GRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR--TRGLCSKGQ 504
G + PP P A L + R RG+ S GQ
Sbjct: 869 GSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQ 911
Score = 29.3 bits (64), Expect = 9.0
Identities = 34/127 (26%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Query: 371 WKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGAR----- 425
W DE+ KI+TP P+K P P ++ A +T R+ AR
Sbjct: 866 WPPGSDEVAKIQTPPPKKEP----------------PKEETAQLTGPEAGRKPARGVGSG 909
Query: 426 -LETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARS 484
PPP T+ P P S P + P PR A P P
Sbjct: 910 GQGPPPPRRESRTETRWGPRPGSSRRGIPPEE-----PGAPPRR----AGPIKKPPPPTK 960
Query: 485 VAPLPPQ 491
V LPP+
Sbjct: 961 VEELPPK 967
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 35.0 bits (79), Expect = 0.16
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 376 DEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAM 435
DE K+ +P Q KQG E+ + ++ + TP L
Sbjct: 2427 DEKPKLAEAPSAQPNQTQEKQGQPKPELQQQ-------------EQPEQKTNTPQQKLPQ 2473
Query: 436 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVP--PDHSPRARSVAPLPPQRS 493
P+LP P AP P PLP P L +P P H+ + +A LPPQ
Sbjct: 2474 LVSLPSLPQP---PPQAPPPQC--PLPQSSPSPSQLSHLPLKPLHTSTPQQLANLPPQLI 2528
Query: 494 PRTRGLCSKGQP 505
P C P
Sbjct: 2529 PYQCDQCKLAFP 2540
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 35.0 bits (79), Expect = 0.16
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 488
PPP + P + +P +PA AP P P P+ + PP P A V P
Sbjct: 366 PPPSAGVHPQAPGV-HPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQ 424
Query: 489 PPQRSPRTRGL 499
PP P G+
Sbjct: 425 PPGVHPSNPGV 435
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 34.7 bits (78), Expect = 0.21
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 33/131 (25%)
Query: 381 IETPAP-RKPPQ--ALAKQGSLYHEMAIEPLDDIAAVTDILTQR---EGARLETPPPWLA 434
+E PA R+PP+ L+++G++ P ++ A + +R +E PP +
Sbjct: 1216 VEEPADSREPPEEPGLSQEGAMLLSPE-PPAKEVEARPPLSPERAPEHDLEVEPEPPMML 1274
Query: 435 MFTDQPALPNPCSPASVAPAP-----DWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLP 489
QP LP P P +P P D +HP +VPP+ PL
Sbjct: 1275 PLPLQPPLPPPRPPRPPSPPPEPETTDASHP------------SVPPE---------PLA 1313
Query: 490 PQRSPRTRGLC 500
P T GLC
Sbjct: 1314 EDHPPHTPGLC 1324
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 488
PPP QPALP+P P VAP P P P P ++ + PP P A +A
Sbjct: 1476 PPP-------QPALPSP--PPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAP 1526
Query: 489 PPQ 491
P +
Sbjct: 1527 PEE 1529
Score = 29.6 bits (65), Expect = 6.9
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 426 LETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPW----GRPRTFSLDAVPPDHSPR 481
L+ PP T P P P +PA+ P P LP G P L+ PP P
Sbjct: 1405 LDDPPLAGPKDTSTPDGP-PLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPP 1463
Query: 482 ARSVAPLPPQRSP 494
A + P PP P
Sbjct: 1464 APTPQPQPPPPPP 1476
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 34.3 bits (77), Expect = 0.28
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 488
PPP L D P LP P P + P PD+ P P + PP P A + AP+
Sbjct: 559 PPPPL----DDPELPPP-PPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPAPV 613
Query: 489 PPQRSP 494
P P
Sbjct: 614 PDSARP 619
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 34.3 bits (77), Expect = 0.28
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 411 IAAVTDILTQREG--ARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRT 468
IA +I+T +E + ETPPP + + P LP P P P P+P P+
Sbjct: 506 IALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLPP-LPPIP-ALPQQ 563
Query: 469 FSLDAVPPDHSP-RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
L P S A S + LPP +T + S+ + +Q V
Sbjct: 564 PPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQPPVQVSV 609
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 34.3 bits (77), Expect = 0.28
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 411 IAAVTDILTQREG--ARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRT 468
IA +I+T +E + ETPPP + + P LP P P P P+P P+
Sbjct: 506 IALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLPP-LPPIP-ALPQQ 563
Query: 469 FSLDAVPPDHSP-RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
L P S A S + LPP +T + S+ + +Q V
Sbjct: 564 PPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQPPVQVSV 609
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 34.3 bits (77), Expect = 0.28
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 378 IMKIETPAPRKPPQALA-KQGSLYHEMAIEPLDDIA-AVTDILTQREGARLETPPPWLAM 435
++K++ A R P +A K+ S+ + I+P + + T + E PP + +
Sbjct: 435 VLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKMVL 494
Query: 436 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR 495
+P+P PA+V PL +F A P P AR+ PL ++
Sbjct: 495 -----RIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTL- 548
Query: 496 TRGLCSKGQPRTWLQSP 512
L S P+ + SP
Sbjct: 549 ---LSSAPVPKVMMPSP 562
>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
Length = 750
Score = 34.3 bits (77), Expect = 0.28
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 378 IMKIETPAPRKPPQALA-KQGSLYHEMAIEPLDDIA-AVTDILTQREGARLETPPPWLAM 435
++K++ A R P +A K+ S+ + I+P + + T + E PP + +
Sbjct: 389 VLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKMVL 448
Query: 436 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR 495
+P+P PA+V PL +F A P P AR+ PL ++
Sbjct: 449 -----RIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTL- 502
Query: 496 TRGLCSKGQPRTWLQSP 512
L S P+ + SP
Sbjct: 503 ---LSSAPVPKVMMPSP 516
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 34.3 bits (77), Expect = 0.28
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 382 ETPAPRKPPQAL--AKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQ 439
E P P P Q L ++G A P+ + +I T G L PPP +
Sbjct: 206 EKPLPPTPGQRLHPGREGP----PAPPPVKPPPSPVNIRTGPSGQSLAPPPP---PYRQP 258
Query: 440 PALPN-PCSPA--SVAPAPDWTHPLPWGRPRTFSLDAVPP--DHSPRARSVAPLPPQRSP 494
P +PN P SP S P + L P A PP SP S P PP R P
Sbjct: 259 PGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDP 318
Query: 495 RTRGLCSKGQP 505
+RG P
Sbjct: 319 PSRGAAPPPPP 329
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 33.9 bits (76), Expect = 0.36
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 414 VTDILTQREGARLETPPPWLAMFTDQPALPNPCSPAS------------VAPAPDWTHPL 461
VTD +R PP LA T PA P +PAS AP D P
Sbjct: 6 VTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARP- 64
Query: 462 PWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQP 505
P R S+D V +P A + P + + GQP
Sbjct: 65 PARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQP 108
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 33.5 bits (75), Expect = 0.48
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 440 PALPN-PCSP--ASVAPA-------PDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLP 489
P LP PC P A AP+ PD P P P + PPD A A LP
Sbjct: 267 PGLPRGPCGPDCAPAAPSLPQDPCGPDCAPPAPGLPPDPCGSNCAPPD----AVRAAALP 322
Query: 490 PQRSPRTR 497
PQ P+TR
Sbjct: 323 PQTPPQTR 330
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 33.1 bits (74), Expect = 0.62
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 429 PPPWLAMFTDQPALPNPCSPASVAPAPDW---THPLPWGRPRTF---SLDAVPPDHSPRA 482
PPP LA PA P A PAP P P + S A SPR
Sbjct: 432 PPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRK 491
Query: 483 RSVAPLPPQRSP 494
S P PPQ++P
Sbjct: 492 ASAVPAPPQKTP 503
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.62
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 428 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 470
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 471 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 506
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.62
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 428 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 470
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 471 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 506
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
Score = 30.0 bits (66), Expect = 5.3
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 438 DQPALPNPCSPASVAPAPDWTHPLPWGRP----RTFSLDAVPPDHSPRARSVAPLPPQRS 493
+ P+L P +P+ P P PWGRP R P PRA P P +
Sbjct: 2 EAPSLCPPTAPSEPLTCPMGVSPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAA 61
Query: 494 PR 495
R
Sbjct: 62 TR 63
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.62
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 428 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 470
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 471 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 506
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,353,185
Number of Sequences: 37866
Number of extensions: 1244302
Number of successful extensions: 5069
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 4858
Number of HSP's gapped (non-prelim): 333
length of query: 513
length of database: 18,247,518
effective HSP length: 107
effective length of query: 406
effective length of database: 14,195,856
effective search space: 5763517536
effective search space used: 5763517536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.