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Search of human proteins with 62739179
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62739179 rhotekin isoform a [Homo sapiens]
(563 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62739179 rhotekin isoform a [Homo sapiens] 1149 0.0
gi|19526471 rhotekin isoform b [Homo sapiens] 1080 0.0
gi|62739181 rhotekin isoform c [Homo sapiens] 1052 0.0
gi|26190614 rhotekin 2 [Homo sapiens] 391 e-108
gi|47132519 Ras association and pleckstrin homology domains 1 is... 40 0.004
gi|24432056 hypothetical protein LOC144717 [Homo sapiens] 40 0.006
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.028
gi|11386183 WAS protein family, member 2 [Homo sapiens] 38 0.028
gi|189181750 human immunodeficiency virus type I enhancer bindin... 37 0.048
gi|116089331 human immunodeficiency virus type I enhancer bindin... 37 0.048
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.11
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.11
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 36 0.11
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 36 0.11
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 35 0.18
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 35 0.18
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.24
gi|153792074 proline rich 12 [Homo sapiens] 35 0.24
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 34 0.31
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 34 0.31
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 34 0.31
gi|20986488 YY1-associated protein isoform 2 [Homo sapiens] 34 0.31
gi|20986490 YY1-associated protein isoform 3 [Homo sapiens] 34 0.31
gi|18959210 WIRE protein [Homo sapiens] 34 0.31
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 34 0.41
gi|32483397 dopamine receptor D4 [Homo sapiens] 33 0.53
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 33 0.70
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 33 0.70
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 33 0.70
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 33 0.70
>gi|62739179 rhotekin isoform a [Homo sapiens]
Length = 563
Score = 1149 bits (2973), Expect = 0.0
Identities = 563/563 (100%), Positives = 563/563 (100%)
Query: 1 MFSRNHRSRVTVARGSALEMEFKRGRFRLSLFSDLPEDTELQRKLDHEIRMREGACKLLA 60
MFSRNHRSRVTVARGSALEMEFKRGRFRLSLFSDLPEDTELQRKLDHEIRMREGACKLLA
Sbjct: 1 MFSRNHRSRVTVARGSALEMEFKRGRFRLSLFSDLPEDTELQRKLDHEIRMREGACKLLA 60
Query: 61 ACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGPPAERSPCRGR 120
ACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGPPAERSPCRGR
Sbjct: 61 ACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGPPAERSPCRGR 120
Query: 121 VCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRTLTDISFQSNV 180
VCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRTLTDISFQSNV
Sbjct: 121 VCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRTLTDISFQSNV 180
Query: 181 LFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVRASLDSAGGSG 240
LFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVRASLDSAGGSG
Sbjct: 181 LFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVRASLDSAGGSG 240
Query: 241 SSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWLPLYGSVCCRL 300
SSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWLPLYGSVCCRL
Sbjct: 241 SSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWLPLYGSVCCRL 300
Query: 301 AAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADTGEEPLLTIAV 360
AAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADTGEEPLLTIAV
Sbjct: 301 AAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADTGEEPLLTIAV 360
Query: 361 NKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEALWQLFFDMSQ 420
NKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEALWQLFFDMSQ
Sbjct: 361 NKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEALWQLFFDMSQ 420
Query: 421 WKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPP 480
WKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPP
Sbjct: 421 WKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPP 480
Query: 481 PWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPP 540
PWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPP
Sbjct: 481 PWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPP 540
Query: 541 QRSPRTRGLCSKGQPRTWLQSPV 563
QRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 541 QRSPRTRGLCSKGQPRTWLQSPV 563
>gi|19526471 rhotekin isoform b [Homo sapiens]
Length = 550
Score = 1080 bits (2793), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 37 EDTELQRKLDHEIRMREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQ 96
EDTELQRKLDHEIRMREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQ
Sbjct: 24 EDTELQRKLDHEIRMREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQ 83
Query: 97 VLGKTSRRPSDSGPPAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLG 156
VLGKTSRRPSDSGPPAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLG
Sbjct: 84 VLGKTSRRPSDSGPPAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLG 143
Query: 157 EHIQDTEMILVDRTLTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATK 216
EHIQDTEMILVDRTLTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATK
Sbjct: 144 EHIQDTEMILVDRTLTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATK 203
Query: 217 LSSSLGRSSGRRVRASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTH 276
LSSSLGRSSGRRVRASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTH
Sbjct: 204 LSSSLGRSSGRRVRASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTH 263
Query: 277 DLTLASHEENPAWLPLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKG 336
DLTLASHEENPAWLPLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKG
Sbjct: 264 DLTLASHEENPAWLPLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKG 323
Query: 337 TNLFCYRQPEDADTGEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTL 396
TNLFCYRQPEDADTGEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTL
Sbjct: 324 TNLFCYRQPEDADTGEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTL 383
Query: 397 QTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIE 456
QTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIE
Sbjct: 384 QTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIE 443
Query: 457 PLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRP 516
PLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRP
Sbjct: 444 PLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRP 503
Query: 517 RTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 563
RTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 504 RTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 550
>gi|62739181 rhotekin isoform c [Homo sapiens]
Length = 513
Score = 1052 bits (2721), Expect = 0.0
Identities = 513/513 (100%), Positives = 513/513 (100%)
Query: 51 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 110
MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP
Sbjct: 1 MREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQVLGKTSRRPSDSGP 60
Query: 111 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 170
PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT
Sbjct: 61 PAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMILVDRT 120
Query: 171 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 230
LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR
Sbjct: 121 LTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATKLSSSLGRSSGRRVR 180
Query: 231 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 290
ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL
Sbjct: 181 ASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTHDLTLASHEENPAWL 240
Query: 291 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 350
PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT
Sbjct: 241 PLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGEMQNWAQVHGVLKGTNLFCYRQPEDADT 300
Query: 351 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 410
GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA
Sbjct: 301 GEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHTLQTESREALQSWMEA 360
Query: 411 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 470
LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ
Sbjct: 361 LWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQ 420
Query: 471 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 530
REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP
Sbjct: 421 REGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSP 480
Query: 531 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 563
RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV
Sbjct: 481 RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 513
>gi|26190614 rhotekin 2 [Homo sapiens]
Length = 609
Score = 391 bits (1004), Expect = e-108
Identities = 197/462 (42%), Positives = 302/462 (65%), Gaps = 19/462 (4%)
Query: 37 EDTELQRKLDHEIRMREGACKLLAACSQREQALEATKSLLVCNSRILSYMGELQRRKEAQ 96
+D +Q K+D EIRMREG KLL+ +Q++Q L A K+L+VCN+R+++Y ELQ+ +E Q
Sbjct: 20 QDCNIQEKIDLEIRMREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTSELQKLEE-Q 78
Query: 97 VLGKTSRRPSDSGPPAERSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLG 156
+ +T R ER+ C+G++ ISD+RIPLMWKD+++F NK R+A+F L ++G
Sbjct: 79 IANQTGRCDVKF-ESKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMG 137
Query: 157 EHIQDTEMILVDRTLTDISFQSNVLFAEAGPDFELRLELYGACVEEEGALTGGPKRLATK 216
++ DT+++ VD+T+TDI F++ +F EAGPDF++++E+Y C EE ++T PK+LA K
Sbjct: 138 ANVFDTDVVNVDKTITDICFENVTIFNEAGPDFQIKVEVYSCCT-EESSITNTPKKLAKK 196
Query: 217 LSSSLGRSSGRRVRASLDSAGGSGSSPILLPTPVVGGPRYHLLAHTTLTLAAVQDGFRTH 276
L +S+ +++G+++ + L LL + V G +Y+LLAHTTLTL + +D F+TH
Sbjct: 197 LKTSISKATGKKISSVLQE---EDDEMCLLLSSAVFGVKYNLLAHTTLTLESAEDSFKTH 253
Query: 277 DLTLASHEENPAWLPLYGSVCCRLAAQPLCMTQPTASGTLRVQQAGE-MQNWAQVHGVLK 335
+L++ +EE+ WLPLYG++CCRL AQP CM + +G L QQ E + +W +++ VL+
Sbjct: 254 NLSINGNEESSFWLPLYGNMCCRLVAQPACMAEDAFAGFLNQQQMVEGLISWRRLYCVLR 313
Query: 336 GTNLFCYRQPEDADTGEEPLLTIAVNKETRVRAGELDQALGRPFTLSISNQYGDDEVTHT 395
G L+C+ PE+ + EP L + +NKETR+RA + D A R S+ N +T
Sbjct: 314 GGKLYCFYSPEEIEAKVEPALVVPINKETRIRAMDKD-AKKRIHNFSVINPVPGQAITQI 372
Query: 396 LQTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQG-SLYHEMA 454
++RE LQ WMEA WQ FFD+SQWK CC+E+MKIE +PRKPP L K+ S+YH+M+
Sbjct: 373 FAVDNREDLQKWMEAFWQHFFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYHDMS 432
Query: 455 IEPLDDIAAVTDILTQR----EGARL------ETPPPWLAMF 486
I+ + ++TDI+ ++ G L PPPW +F
Sbjct: 433 IDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPPPWATLF 474
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 40.4 bits (93), Expect = 0.004
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 433 TPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQPAL 492
TP PP L KQ S + PL + +V ++ A PPP QP
Sbjct: 830 TPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVV-----KQIASQFPPPPTPPAMESQPLK 884
Query: 493 PNPC-----SPASVAPAPDW---THPLPWGR----PRTFSLDAVPPDHSPRARSVAPLPP 540
P P SP +V P W + P+P P SL PP SP P PP
Sbjct: 885 PVPANVAPQSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPP 944
Query: 541 QRSPRTRGLCSKGQPRTWLQSP 562
SP S G+ + SP
Sbjct: 945 TASPTPDKSGSPGKKTSKTSSP 966
Score = 31.2 bits (69), Expect = 2.6
Identities = 32/118 (27%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 427 EIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMF 486
++ I AP PP L + +PL I A T T PP
Sbjct: 751 QVQHITQVAPPTPPPPPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPP------ 804
Query: 487 TDQPALP----NPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPP 540
T P +P P PAS P T P+P VPP P+ +S PP
Sbjct: 805 TPTPPVPPAKKQPAFPASYIPPSPPTPPVP-----------VPPPTLPKQQSFCAKPP 851
>gi|24432056 hypothetical protein LOC144717 [Homo sapiens]
Length = 249
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 45/161 (27%)
Query: 393 THTLQTESREALQSWMEALWQLFFDMSQWKQCCDEIMKIETPAPRKPPQALAKQGSLYHE 452
T+ L ES++A++ W++AL + FD Y
Sbjct: 90 TYVLAAESQDAMEGWVKALSRASFD--------------------------------YLR 117
Query: 453 MAIEPLD-DIAAVTD----ILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPDW 507
+ + L+ +AAV L Q + L PP + P+LP+ +P P P
Sbjct: 118 LVVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRR 177
Query: 508 THPLP--------WGRPRTFSLDAVPPDHSPRARSVAPLPP 540
LP W TF PP PR R+ AP P
Sbjct: 178 PSALPPKENGCAVWSTEATFRPGPEPPPPPPRRRASAPHGP 218
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.7 bits (86), Expect = 0.028
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 431 IETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQP 490
+ET + PP SL PL+++ ++ Q A L TP + P
Sbjct: 512 LETQSSLAPPSLQTPPASL----TTPPLENLPSLAPPPLQTASAPLTTP------HLETP 561
Query: 491 ALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSP 544
P PC P P+P T P P T S A PP +P A + PL SP
Sbjct: 562 PCPAPC-PLQAPPSPLTTPP-----PETPSSIATPPPQAPPALASPPLQGLPSP 609
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 37.7 bits (86), Expect = 0.028
Identities = 22/66 (33%), Positives = 26/66 (39%)
Query: 479 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 538
PPP + P P P SP S P PD+ P P P +PP + AP
Sbjct: 333 PPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPP 392
Query: 539 PPQRSP 544
PP P
Sbjct: 393 PPPPPP 398
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 37.0 bits (84), Expect = 0.048
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 470 QREGARLETPPPWLAMFTDQPALP----NPCSPASVAPAP--------DWTHPLPWGR-P 516
+R G PP W T PA P +PC+P P P W+ L R P
Sbjct: 2278 ERTGGGPGRPPDWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGRRAAQSWSPRLESPRAP 2337
Query: 517 RTFSLDAVPP-DHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSP 562
A PP D S +A + RTR L G+PRT SP
Sbjct: 2338 TNPEPSATPPLDRSSSVGCLAEASARFPARTRNL--SGEPRTRQDSP 2382
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 37.0 bits (84), Expect = 0.048
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 470 QREGARLETPPPWLAMFTDQPALP----NPCSPASVAPAP--------DWTHPLPWGR-P 516
+R G PP W T PA P +PC+P P P W+ L R P
Sbjct: 2279 ERTGGGPGRPPDWTPHGTGAPAEPTPTHSPCTPPDTLPRPPQGRRAAQSWSPRLESPRAP 2338
Query: 517 RTFSLDAVPP-DHSPRARSVAPLPPQRSPRTRGLCSKGQPRTWLQSP 562
A PP D S +A + RTR L G+PRT SP
Sbjct: 2339 TNPEPSATPPLDRSSSVGCLAEASARFPARTRNL--SGEPRTRQDSP 2383
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.11
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 489 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 546
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.11
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 489 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 546
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 35.8 bits (81), Expect = 0.11
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 489 QPALPNPCSP-ASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRT 546
QP +P P A APAP P P P S + H+P ++ PLPP SPR+
Sbjct: 221 QPPPQHPSQPSAQSAPAP--AQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRS 277
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.8 bits (81), Expect = 0.11
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Query: 457 PLDDIAAVTDILTQREGARLETPPPWLAMFTDQPALPNPCSPASVAPAPD-WTHPLPW-- 513
PL A D + E + PPP+LA + P P P S P + PLPW
Sbjct: 809 PLRQAADEDDKGMRSETPPVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPP 868
Query: 514 GRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR--TRGLCSKGQ 554
G + PP P A L + R RG+ S GQ
Sbjct: 869 GSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQ 911
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 35.0 bits (79), Expect = 0.18
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 426 DEIMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAM 485
DE K+ +P Q KQG E+ + ++ + TP L
Sbjct: 2427 DEKPKLAEAPSAQPNQTQEKQGQPKPELQQQ-------------EQPEQKTNTPQQKLPQ 2473
Query: 486 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVP--PDHSPRARSVAPLPPQRS 543
P+LP P AP P PLP P L +P P H+ + +A LPPQ
Sbjct: 2474 LVSLPSLPQP---PPQAPPPQC--PLPQSSPSPSQLSHLPLKPLHTSTPQQLANLPPQLI 2528
Query: 544 PRTRGLCSKGQP 555
P C P
Sbjct: 2529 PYQCDQCKLAFP 2540
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 479 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 538
PPP + P + +P +PA AP P P P+ + PP P A V P
Sbjct: 366 PPPSAGVHPQAPGV-HPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQ 424
Query: 539 PPQRSPRTRGL 549
PP P G+
Sbjct: 425 PPGVHPSNPGV 435
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 34.7 bits (78), Expect = 0.24
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 33/131 (25%)
Query: 431 IETPAP-RKPPQ--ALAKQGSLYHEMAIEPLDDIAAVTDILTQR---EGARLETPPPWLA 484
+E PA R+PP+ L+++G++ P ++ A + +R +E PP +
Sbjct: 1216 VEEPADSREPPEEPGLSQEGAMLLSPE-PPAKEVEARPPLSPERAPEHDLEVEPEPPMML 1274
Query: 485 MFTDQPALPNPCSPASVAPAP-----DWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLP 539
QP LP P P +P P D +HP +VPP+ PL
Sbjct: 1275 PLPLQPPLPPPRPPRPPSPPPEPETTDASHP------------SVPPE---------PLA 1313
Query: 540 PQRSPRTRGLC 550
P T GLC
Sbjct: 1314 EDHPPHTPGLC 1324
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.24
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 479 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 538
PPP QPALP+P P VAP P P P P ++ + PP P A +A
Sbjct: 1476 PPP-------QPALPSP--PPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAP 1526
Query: 539 PPQ 541
P +
Sbjct: 1527 PEE 1529
Score = 29.6 bits (65), Expect = 7.7
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 476 LETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPW----GRPRTFSLDAVPPDHSPR 531
L+ PP T P P P +PA+ P P LP G P L+ PP P
Sbjct: 1405 LDDPPLAGPKDTSTPDGP-PLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPP 1463
Query: 532 ARSVAPLPPQRSP 544
A + P PP P
Sbjct: 1464 APTPQPQPPPPPP 1476
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 34.3 bits (77), Expect = 0.31
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 479 PPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPL 538
PPP L D P LP P P + P PD+ P P + PP P A + AP+
Sbjct: 559 PPPPL----DDPELPPP-PPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPAPV 613
Query: 539 PPQRSP 544
P P
Sbjct: 614 PDSARP 619
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 34.3 bits (77), Expect = 0.31
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 461 IAAVTDILTQREG--ARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRT 518
IA +I+T +E + ETPPP + + P LP P P P P+P P+
Sbjct: 506 IALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLPP-LPPIP-ALPQQ 563
Query: 519 FSLDAVPPDHSP-RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 563
L P S A S + LPP +T + S+ + +Q V
Sbjct: 564 PPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQPPVQVSV 609
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 34.3 bits (77), Expect = 0.31
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 461 IAAVTDILTQREG--ARLETPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGRPRT 518
IA +I+T +E + ETPPP + + P LP P P P P+P P+
Sbjct: 506 IALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLPP-LPPIP-ALPQQ 563
Query: 519 FSLDAVPPDHSP-RARSVAPLPPQRSPRTRGLCSKGQPRTWLQSPV 563
L P S A S + LPP +T + S+ + +Q V
Sbjct: 564 PPLPPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQPPVQVSV 609
>gi|20986488 YY1-associated protein isoform 2 [Homo sapiens]
Length = 796
Score = 34.3 bits (77), Expect = 0.31
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 428 IMKIETPAPRKPPQALA-KQGSLYHEMAIEPLDDIA-AVTDILTQREGARLETPPPWLAM 485
++K++ A R P +A K+ S+ + I+P + + T + E PP + +
Sbjct: 435 VLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKMVL 494
Query: 486 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR 545
+P+P PA+V PL +F A P P AR+ PL ++
Sbjct: 495 -----RIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTL- 548
Query: 546 TRGLCSKGQPRTWLQSP 562
L S P+ + SP
Sbjct: 549 ---LSSAPVPKVMMPSP 562
>gi|20986490 YY1-associated protein isoform 3 [Homo sapiens]
Length = 750
Score = 34.3 bits (77), Expect = 0.31
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 428 IMKIETPAPRKPPQALA-KQGSLYHEMAIEPLDDIA-AVTDILTQREGARLETPPPWLAM 485
++K++ A R P +A K+ S+ + I+P + + T + E PP + +
Sbjct: 389 VLKLKPVADRFPKKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPAQSTHSEAPPSKMVL 448
Query: 486 FTDQPALPNPCSPASVAPAPDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPR 545
+P+P PA+V PL +F A P P AR+ PL ++
Sbjct: 449 -----RIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAMPPEARTSFPLSESQTL- 502
Query: 546 TRGLCSKGQPRTWLQSP 562
L S P+ + SP
Sbjct: 503 ---LSSAPVPKVMMPSP 516
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 34.3 bits (77), Expect = 0.31
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 432 ETPAPRKPPQAL--AKQGSLYHEMAIEPLDDIAAVTDILTQREGARLETPPPWLAMFTDQ 489
E P P P Q L ++G A P+ + +I T G L PPP +
Sbjct: 206 EKPLPPTPGQRLHPGREGP----PAPPPVKPPPSPVNIRTGPSGQSLAPPPP---PYRQP 258
Query: 490 PALPN-PCSPA--SVAPAPDWTHPLPWGRPRTFSLDAVPP--DHSPRARSVAPLPPQRSP 544
P +PN P SP S P + L P A PP SP S P PP R P
Sbjct: 259 PGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDP 318
Query: 545 RTRGLCSKGQP 555
+RG P
Sbjct: 319 PSRGAAPPPPP 329
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 33.9 bits (76), Expect = 0.41
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 464 VTDILTQREGARLETPPPWLAMFTDQPALPNPCSPAS------------VAPAPDWTHPL 511
VTD +R PP LA T PA P +PAS AP D P
Sbjct: 6 VTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARP- 64
Query: 512 PWGRPRTFSLDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQP 555
P R S+D V +P A + P + + GQP
Sbjct: 65 PARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQP 108
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 33.5 bits (75), Expect = 0.53
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 490 PALPN-PCSP--ASVAPA-------PDWTHPLPWGRPRTFSLDAVPPDHSPRARSVAPLP 539
P LP PC P A AP+ PD P P P + PPD A A LP
Sbjct: 267 PGLPRGPCGPDCAPAAPSLPQDPCGPDCAPPAPGLPPDPCGSNCAPPD----AVRAAALP 322
Query: 540 PQRSPRTR 547
PQ P+TR
Sbjct: 323 PQTPPQTR 330
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 33.1 bits (74), Expect = 0.70
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 479 PPPWLAMFTDQPALPNPCSPASVAPAPDW---THPLPWGRPRTF---SLDAVPPDHSPRA 532
PPP LA PA P A PAP P P + S A SPR
Sbjct: 432 PPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRK 491
Query: 533 RSVAPLPPQRSP 544
S P PPQ++P
Sbjct: 492 ASAVPAPPQKTP 503
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.70
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 478 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 520
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 521 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 556
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.70
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 478 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 520
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 521 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 556
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
Score = 30.0 bits (66), Expect = 5.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 488 DQPALPNPCSPASVAPAPDWTHPLPWGRP----RTFSLDAVPPDHSPRARSVAPLPPQRS 543
+ P+L P +P+ P P PWGRP R P PRA P P +
Sbjct: 2 EAPSLCPPTAPSEPLTCPMGVSPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAA 61
Query: 544 PR 545
R
Sbjct: 62 TR 63
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.70
Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 478 TPPPWLAMFTDQPALPNPCSPASVAPAPDWTHPLPWGR-----------------PRTFS 520
+P PW A P PC P + P P P PR +
Sbjct: 23 SPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPA 82
Query: 521 LDAVPPDHSPRARSVAPLPPQRSPRTRGLCSKGQPR 556
+ PP + R R++ PPQR G +PR
Sbjct: 83 RPSQPPSAARRERALLANPPQRPRGDAGALCVSRPR 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,919,753
Number of Sequences: 37866
Number of extensions: 1312486
Number of successful extensions: 5296
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 5109
Number of HSP's gapped (non-prelim): 292
length of query: 563
length of database: 18,247,518
effective HSP length: 107
effective length of query: 456
effective length of database: 14,195,856
effective search space: 6473310336
effective search space used: 6473310336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.